miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: CTCTCCCTCAAAGGCTTCCA

selected species: Physcomitrella patens



25 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Physcomitrella patens GSM115097 CTCTCCCTCAAAGGCTTCCA GAAGCCTTTGTGGGAGAGGA up 2 0


Secondary structure

GTTAAGGGCAGTTGCTTTTTCCTCTCCCTCAAAGGCTTCCAACATGATGTGCGTAAGCCACAACGTTAGAAGCCTTTGTGGGAGAGGAAGAAACAATCGCCTTACA
----------------TTTTCCTCTCCCTCAAAGGCT 	2
-----------------TTTCCTCTCCCTCAAAGGCTT 	1
--------------------CCTCTCCCTCAAAGGCTTCCA 	30
--------------------CCTCTCCCTCAAAGGCTTCCAAC 	1
--------------------CCTCTCCCTCAAAGGCTTCC 	3
---------------------CTCTCCCTCAAAGGCTTCC 	22
---------------------CTCTCCCTCAAAGGCTTCCAACAT 	1
---------------------CTCTCCCTCAAAGGCTTCCAACA 	1
---------------------CTCTCCCTCAAAGGCTTCCAAC 	75
---------------------CTCTCCCTCAAAGGCTTCCAA 	1443
---------------------CTCTCCCTCAAAGGCTTCCA 	2484
----------------------TCTCCCTCAAAGGCTTCCAA 	86
----------------------TCTCCCTCAAAGGCTTCCA 	221
----------------------TCTCCCTCAAAGGCTTCCAAC 	26
------------------------TCCCTCAAAGGCTTCCAACAT 	2
------------------------TCCCTCAAAGGCTTCCAACA 	62
------------------------TCCCTCAAAGGCTTCCAAC 	2
-------------------------CCCTCAAAGGCTTCCAACAT 	1
-------------------------CCCTCAAAGGCTTCCAACA 	2
------------------------------------------------------------------TAGAAGCCTTTGTGGGAGAGG 	4
-------------------------------------------------------------------AGAAGCCTTTGTGGGAGAGGAA 	21
-------------------------------------------------------------------AGAAGCCTTTGTGGGAGAGGA 	891
-------------------------------------------------------------------AGAAGCCTTTGTGGGAGAGG 	52
-------------------------------------------------------------------AGAAGCCTTTGTGGGAGAG 	7
--------------------------------------------------------------------GAAGCCTTTGTGGGAGAGGA 	19
--------------------------------------------------------------------GAAGCCTTTGTGGGAGAGGAA 	4
---------------------------------------------------------------------AAGCCTTTGTGGGAGAGGAA 	1
---------------------------------------------------------------------AAGCCTTTGTGGGAGAGGA 	1


Overlaps with: MNEST039493 MNEST039494
Overlaps with miRBase pre-miRNAs: ppt-MIR477a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Physcomitrella patens GSM115097 CTCTCCCTCAAAGGCTTCCA GAAGCCTCTGTGGGAGAGGA up 3 0


Secondary structure

GGTGCTTGATCCTCTCCCTCAAAGGCTTCCAACAGCATGAGCTAGTTTTAGTGTCTCAAATATTGTCTGTTGAGGCTAGCTCCTGTTCAGATCTGTTAGAAGCCTCTGTGGGAGAGGAGCAATCAG
-----TTGATCCTCTCCCTCAAAGGC 	1
----------CCTCTCCCTCAAAGGCTTCCA 	30
----------CCTCTCCCTCAAAGGCTTCCAAC 	1
----------CCTCTCCCTCAAAGGCTTCC 	3
-----------CTCTCCCTCAAAGGCTTCC 	22
-----------CTCTCCCTCAAAGGCTTCCAACA 	1
-----------CTCTCCCTCAAAGGCTTCCAAC 	75
-----------CTCTCCCTCAAAGGCTTCCAA 	1443
-----------CTCTCCCTCAAAGGCTTCCA 	2484
------------TCTCCCTCAAAGGCTTCCAACAGC 	1
------------TCTCCCTCAAAGGCTTCCAA 	86
------------TCTCCCTCAAAGGCTTCCA 	221
------------TCTCCCTCAAAGGCTTCCAAC 	26
--------------TCCCTCAAAGGCTTCCAACAG 	5
--------------TCCCTCAAAGGCTTCCAACA 	62
--------------TCCCTCAAAGGCTTCCAAC 	2
---------------CCCTCAAAGGCTTCCAACA 	2
------------------------------------------------------------------------------------------------TAGAAGCCTCTGTGGGAGAGG 	1
-------------------------------------------------------------------------------------------------AGAAGCCTCTGTGGGAGAGGA 	4
-------------------------------------------------------------------------------------------------AGAAGCCTCTGTGGGAGAG 	2
--------------------------------------------------------------------------------------------------GAAGCCTCTGTGGGAGAGGA 	1


Overlaps with: MNEST039495 MNEST051400
Overlaps with miRBase pre-miRNAs: ppt-MIR477b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Physcomitrella patens GSM115097 CTCTCCCTCAAAGGCTTCCA GAAGCCTCTGGGGGTGACGA up 4 0


Secondary structure

ATTGCTTGTTCCTCTCCCTCAAAGGCTTCCAACAACAGGTACTTGGTCTTGTTTTCACCAGCAAAGCTAAGGCCCGTCCCAGATGTTAGAAGCCTCTGGGGGTGACGAAGCAGCAG
----------CCTCTCCCTCAAAGGCTTCCA 	30
----------CCTCTCCCTCAAAGGCTTCCAAC 	1
----------CCTCTCCCTCAAAGGCTTCC 	3
-----------CTCTCCCTCAAAGGCTTCC 	22
-----------CTCTCCCTCAAAGGCTTCCAACAAC 	2
-----------CTCTCCCTCAAAGGCTTCCAACAA 	4
-----------CTCTCCCTCAAAGGCTTCCAACA 	1
-----------CTCTCCCTCAAAGGCTTCCAAC 	75
-----------CTCTCCCTCAAAGGCTTCCAA 	1443
-----------CTCTCCCTCAAAGGCTTCCA 	2484
------------TCTCCCTCAAAGGCTTCCAA 	86
------------TCTCCCTCAAAGGCTTCCA 	221
------------TCTCCCTCAAAGGCTTCCAAC 	26
--------------TCCCTCAAAGGCTTCCAACAA 	325
--------------TCCCTCAAAGGCTTCCAACAACAG 	7
--------------TCCCTCAAAGGCTTCCAACAACA 	11
--------------TCCCTCAAAGGCTTCCAACAAC 	244
--------------TCCCTCAAAGGCTTCCAACA 	62
--------------TCCCTCAAAGGCTTCCAAC 	2
---------------CCCTCAAAGGCTTCCAACAAC 	8
---------------CCCTCAAAGGCTTCCAACAA 	1
---------------CCCTCAAAGGCTTCCAACA 	2
----------------CCTCAAAGGCTTCCAACAAC 	2
------------------------------------------------------------------------------------GTTAGAAGCCTCTGGGGGTG 	1
------------------------------------------------------------------------------------GTTAGAAGCCTCTGGGGGTGAC 	7
------------------------------------------------------------------------------------GTTAGAAGCCTCTGGGGGTGA 	39
-------------------------------------------------------------------------------------TTAGAAGCCTCTGGGGGTGA 	1
---------------------------------------------------------------------------------------AGAAGCCTCTGGGGGTGAC 	10


Overlaps with: MNEST039497 MNEST051402
Overlaps with miRBase pre-miRNAs: ppt-MIR477d
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Physcomitrella patens GSM115097 CTCTCCCTCAAAGGCTTCCA GAAGTCTTTGTTGAAGAGGA up 4 0


Secondary structure

GTGAAGGGTAGTTGATTTTTCCTCTCCCTCAAAGGCTTCCAACGTCCTTTTTGTGAGCAAGCACGCTGGAAGTCTTTGTTGAAGAGGAGGAAACAAATACCTTGAT
----------------TTTTCCTCTCCCTCAAAGGCT 	2
-----------------TTTCCTCTCCCTCAAAGGCTT 	1
--------------------CCTCTCCCTCAAAGGCTTCCA 	30
--------------------CCTCTCCCTCAAAGGCTTCCAAC 	1
--------------------CCTCTCCCTCAAAGGCTTCC 	3
---------------------CTCTCCCTCAAAGGCTTCCAACGT 	8
---------------------CTCTCCCTCAAAGGCTTCC 	22
---------------------CTCTCCCTCAAAGGCTTCCAACG 	6
---------------------CTCTCCCTCAAAGGCTTCCAAC 	75
---------------------CTCTCCCTCAAAGGCTTCCAA 	1443
---------------------CTCTCCCTCAAAGGCTTCCA 	2484
----------------------TCTCCCTCAAAGGCTTCCAACG 	4
----------------------TCTCCCTCAAAGGCTTCCAA 	86
----------------------TCTCCCTCAAAGGCTTCCA 	221
----------------------TCTCCCTCAAAGGCTTCCAAC 	26
-----------------------CTCCCTCAAAGGCTTCCAACG 	1
------------------------TCCCTCAAAGGCTTCCAACGT 	1
------------------------TCCCTCAAAGGCTTCCAAC 	2
----------------------------------------------------------------GCTGGAAGTCTTTGTTGAAGAGGA 	1
-----------------------------------------------------------------CTGGAAGTCTTTGTTGAAGAGGA 	8
-----------------------------------------------------------------CTGGAAGTCTTTGTTGAAGAG 	1
-----------------------------------------------------------------CTGGAAGTCTTTGTTGAAGAGG 	3
-------------------------------------------------------------------GGAAGTCTTTGTTGAAGAGGA 	78
-------------------------------------------------------------------GGAAGTCTTTGTTGAAGAGG 	3
--------------------------------------------------------------------GAAGTCTTTGTTGAAGAGGAG 	6
--------------------------------------------------------------------GAAGTCTTTGTTGAAGAGGA 	1


Overlaps with: MNEST039496 MNEST051401
Overlaps with miRBase pre-miRNAs: ppt-MIR477c
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Physcomitrella patens GSM115097 CTCTCCCTCAAAGGCTTCCA GAAGCCTTTGTGGGAGAGGG up 3 0


Secondary structure

CCGAAAGGCGGTTGCTTATCTCTCTCCCTCAAAGGCTTCCAACATCAGGTGTAGAAGCCTTGCTAGAAGCCTTTGTGGGAGAGGGGGAAACAAACGCCTTGCA
-------GCGGTTGCTTATCTCTCTCC 	4
----------------TATCTCTCTCCCTCAAAGGCT 	1
---------------------CTCTCCCTCAAAGGCTTCC 	22
---------------------CTCTCCCTCAAAGGCTTCCAACAT 	1
---------------------CTCTCCCTCAAAGGCTTCCAACA 	1
---------------------CTCTCCCTCAAAGGCTTCCAAC 	75
---------------------CTCTCCCTCAAAGGCTTCCAA 	1443
---------------------CTCTCCCTCAAAGGCTTCCA 	2484
----------------------TCTCCCTCAAAGGCTTCCAA 	86
----------------------TCTCCCTCAAAGGCTTCCA 	221
----------------------TCTCCCTCAAAGGCTTCCAAC 	26
------------------------TCCCTCAAAGGCTTCCAACATCA 	1
------------------------TCCCTCAAAGGCTTCCAACAT 	2
------------------------TCCCTCAAAGGCTTCCAACA 	62
------------------------TCCCTCAAAGGCTTCCAAC 	2
-------------------------CCCTCAAAGGCTTCCAACAT 	1
-------------------------CCCTCAAAGGCTTCCAACA 	2
---------------------------------------------------------------TAGAAGCCTTTGTGGGAGAGG 	4
----------------------------------------------------------------AGAAGCCTTTGTGGGAGAGGG 	1102
----------------------------------------------------------------AGAAGCCTTTGTGGGAGAGG 	52
----------------------------------------------------------------AGAAGCCTTTGTGGGAGAG 	7
-----------------------------------------------------------------GAAGCCTTTGTGGGAGAGGG 	16
------------------------------------------------------------------AAGCCTTTGTGGGAGAGGG 	1
------------------------------------------------------------------------------GAGAGGGGGAAACAAACGCCT 	2


Overlaps with: MNEST039498 MNEST051403
Overlaps with miRBase pre-miRNAs: ppt-MIR477e
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Physcomitrella patens GSM313212 CTCTCCCTCAAAGGCTTCCAA AGAAGCCTCTGTGGGAGAGGA up 3 0


Secondary structure

GGTGCTTGATCCTCTCCCTCAAAGGCTTCCAACAGCATGAGCTAGTTTTAGTGTCTCAAATATTGTCTGTTGAGGCTAGCTCCTGTTCAGATCTGTTAGAAGCCTCTGTGGGAGAGGAGCAATCAG
----------CCTCTCCCTCAAAGGCTTCCA 	2
-----------CTCTCCCTCAAAGGCTTCC 	6
-----------CTCTCCCTCAAAGGCTTCCA 	50
-----------CTCTCCCTCAAAGGCTTCCAAC 	9
-----------CTCTCCCTCAAAGGCTTCCAA 	215
------------TCTCCCTCAAAGGCTTCCAAC 	5
------------TCTCCCTCAAAGGCTTCCAA 	106
------------TCTCCCTCAAAGGCTTCCA 	22
--------------TCCCTCAAAGGCTTCCAAC 	5
--------------TCCCTCAAAGGCTTCCAACA 	26
---------------CCCTCAAAGGCTTCCAACA 	2


Overlaps with: MNEST039495 MNEST051400
Overlaps with miRBase pre-miRNAs: ppt-MIR477b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
7 Physcomitrella patens GSM115095 CTCTCCCTCAAAGGCTTCCAA AGAAGCCTTTGTGGGAGAGGA up 2 0


Secondary structure

GTTAAGGGCAGTTGCTTTTTCCTCTCCCTCAAAGGCTTCCAACATGATGTGCGTAAGCCACAACGTTAGAAGCCTTTGTGGGAGAGGAAGAAACAATCGCCTTACA
---------------------CTCTCCCTCAAAGGCTTCC 	1
---------------------CTCTCCCTCAAAGGCTTCCAAC 	1
---------------------CTCTCCCTCAAAGGCTTCCAA 	55
---------------------CTCTCCCTCAAAGGCTTCCA 	21
----------------------TCTCCCTCAAAGGCTTCCAAC 	1
----------------------TCTCCCTCAAAGGCTTCCAA 	17
----------------------TCTCCCTCAAAGGCTTCCA 	5
------------------------TCCCTCAAAGGCTTCCAACAT 	1
------------------------TCCCTCAAAGGCTTCCAACA 	4
-------------------------CCCTCAAAGGCTTCCAACA 	1
-------------------------------------------------------------------AGAAGCCTTTGTGGGAGAGGAA 	2
-------------------------------------------------------------------AGAAGCCTTTGTGGGAGAGGA 	18
-------------------------------------------------------------------AGAAGCCTTTGTGGGAGAGG 	3
-------------------------------------------------------------------------CTTTGTGGGAGAGGAAGAAAC 	1
--------------------------------------------------------------------------TTTGTGGGAGAGGAAGAAACA 	1


Overlaps with: MNEST039493 MNEST039494
Overlaps with miRBase pre-miRNAs: ppt-MIR477a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
8 Physcomitrella patens GSM115095 CTCTCCCTCAAAGGCTTCCAA AGAAGCCTCTGTGGGAGAGGA up 3 0


Secondary structure

GGTGCTTGATCCTCTCCCTCAAAGGCTTCCAACAGCATGAGCTAGTTTTAGTGTCTCAAATATTGTCTGTTGAGGCTAGCTCCTGTTCAGATCTGTTAGAAGCCTCTGTGGGAGAGGAGCAATCAG
-----------CTCTCCCTCAAAGGCTTCC 	1
-----------CTCTCCCTCAAAGGCTTCCAAC 	1
-----------CTCTCCCTCAAAGGCTTCCAA 	55
-----------CTCTCCCTCAAAGGCTTCCA 	21
------------TCTCCCTCAAAGGCTTCCAAC 	1
------------TCTCCCTCAAAGGCTTCCAA 	17
------------TCTCCCTCAAAGGCTTCCA 	5
--------------TCCCTCAAAGGCTTCCAACA 	4
---------------CCCTCAAAGGCTTCCAACA 	1


Overlaps with: MNEST039495 MNEST051400
Overlaps with miRBase pre-miRNAs: ppt-MIR477b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
9 Physcomitrella patens GSM115095 CTCTCCCTCAAAGGCTTCCAA GGAAGTCTTTGTTGAAGAGGA up 5 0


Secondary structure

GTGAAGGGTAGTTGATTTTTCCTCTCCCTCAAAGGCTTCCAACGTCCTTTTTGTGAGCAAGCACGCTGGAAGTCTTTGTTGAAGAGGAGGAAACAAATACCTTGAT
---------------------CTCTCCCTCAAAGGCTTCC 	1
---------------------CTCTCCCTCAAAGGCTTCCAACG 	2
---------------------CTCTCCCTCAAAGGCTTCCAAC 	1
---------------------CTCTCCCTCAAAGGCTTCCAA 	55
---------------------CTCTCCCTCAAAGGCTTCCA 	21
----------------------TCTCCCTCAAAGGCTTCCAACG 	2
----------------------TCTCCCTCAAAGGCTTCCAAC 	1
----------------------TCTCCCTCAAAGGCTTCCAA 	17
----------------------TCTCCCTCAAAGGCTTCCA 	5
-----------------------------------------------------------------CTGGAAGTCTTTGTTGAAGAGGA 	5
-----------------------------------------------------------------CTGGAAGTCTTTGTTGAAGAG 	2
-----------------------------------------------------------------CTGGAAGTCTTTGTTGAAGAGG 	2
------------------------------------------------------------------TGGAAGTCTTTGTTGAAGAGG 	1
-------------------------------------------------------------------GGAAGTCTTTGTTGAAGAGGA 	44
--------------------------------------------------------------------GAAGTCTTTGTTGAAGAGGA 	2
------------------------------------------------------------------------TCTTTGTTGAAGAGGAGGAAA 	2
-------------------------------------------------------------------------CTTTGTTGAAGAGGAGGAAACA 	1
-------------------------------------------------------------------------CTTTGTTGAAGAGGAGGAAAC 	1


Overlaps with: MNEST039496 MNEST051401
Overlaps with miRBase pre-miRNAs: ppt-MIR477c
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
10 Physcomitrella patens GSM313213 CTCTCCCTCAAAGGCTTCCAA AGAAGCCTCTGTGGGAGAGGA up 3 0


Secondary structure

GGTGCTTGATCCTCTCCCTCAAAGGCTTCCAACAGCATGAGCTAGTTTTAGTGTCTCAAATATTGTCTGTTGAGGCTAGCTCCTGTTCAGATCTGTTAGAAGCCTCTGTGGGAGAGGAGCAATCAG
----------CCTCTCCCTCAAAGGCTTCCA 	1
-----------CTCTCCCTCAAAGGCTTCC 	6
-----------CTCTCCCTCAAAGGCTTCCAACA 	1
-----------CTCTCCCTCAAAGGCTTCCA 	78
-----------CTCTCCCTCAAAGGCTTCCAAC 	7
-----------CTCTCCCTCAAAGGCTTCCAA 	251
------------TCTCCCTCAAAGGCTTCCAAC 	10
------------TCTCCCTCAAAGGCTTCCAA 	125
------------TCTCCCTCAAAGGCTTCCA 	28
-------------CTCCCTCAAAGGCTTCCAA 	1
-------------CTCCCTCAAAGGCTTCCAACA 	1
--------------TCCCTCAAAGGCTTCCAACA 	35
--------------TCCCTCAAAGGCTTCCAACAG 	2
-------------------------------------------------------------------------------------------------AGAAGCCTCTGTGGGAGAGGA 	1


Overlaps with: MNEST039495 MNEST051400
Overlaps with miRBase pre-miRNAs: ppt-MIR477b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
11 Physcomitrella patens GSM313215 CTCTCCCTCAAAGGCTTCCAA AGAAGCCTCTGTGGGAGAGGA up 3 0


Secondary structure

GGTGCTTGATCCTCTCCCTCAAAGGCTTCCAACAGCATGAGCTAGTTTTAGTGTCTCAAATATTGTCTGTTGAGGCTAGCTCCTGTTCAGATCTGTTAGAAGCCTCTGTGGGAGAGGAGCAATCAG
----------CCTCTCCCTCAAAGGCTTCCA 	2
----------CCTCTCCCTCAAAGGCTTCCAA 	1
-----------CTCTCCCTCAAAGGCTTCC 	3
-----------CTCTCCCTCAAAGGCTTCCA 	27
-----------CTCTCCCTCAAAGGCTTCCAA 	292
-----------CTCTCCCTCAAAGGCTTCCAAC 	10
------------TCTCCCTCAAAGGCTTCCA 	2
------------TCTCCCTCAAAGGCTTCCAAC 	9
------------TCTCCCTCAAAGGCTTCCAA 	26
-------------CTCCCTCAAAGGCTTCCAA 	1
------------------------------------------------------------------------------------------------TAGAAGCCTCTGTGGGAGAGG 	3
-------------------------------------------------------------------------------------------------AGAAGCCTCTGTGGGAGAGGA 	1
--------------------------------------------------------------------------------------------------GAAGCCTCTGTGGGAGAGGA 	1


Overlaps with: MNEST039495 MNEST051400
Overlaps with miRBase pre-miRNAs: ppt-MIR477b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
12 Physcomitrella patens GSM313215 CTCTCCCTCAAAGGCTTCCAA AGAAGCCTCTGGGGGTGACGA up 4 0


Secondary structure

ATTGCTTGTTCCTCTCCCTCAAAGGCTTCCAACAACAGGTACTTGGTCTTGTTTTCACCAGCAAAGCTAAGGCCCGTCCCAGATGTTAGAAGCCTCTGGGGGTGACGAAGCAGCAG
----------CCTCTCCCTCAAAGGCTTCCA 	2
----------CCTCTCCCTCAAAGGCTTCCAA 	1
-----------CTCTCCCTCAAAGGCTTCC 	3
-----------CTCTCCCTCAAAGGCTTCCA 	27
-----------CTCTCCCTCAAAGGCTTCCAA 	292
-----------CTCTCCCTCAAAGGCTTCCAAC 	10
------------TCTCCCTCAAAGGCTTCCA 	2
------------TCTCCCTCAAAGGCTTCCAAC 	9
------------TCTCCCTCAAAGGCTTCCAA 	26
-------------CTCCCTCAAAGGCTTCCAA 	1
--------------TCCCTCAAAGGCTTCCAACAAC 	29
--------------TCCCTCAAAGGCTTCCAACAA 	15
---------------CCCTCAAAGGCTTCCAACAAC 	2
----------------CCTCAAAGGCTTCCAACAAC 	1
------------------------------------------------------------------------------------GTTAGAAGCCTCTGGGGGTGA 	40
------------------------------------------------------------------------------------GTTAGAAGCCTCTGGGGGTGAC 	1
------------------------------------------------------------------------------------GTTAGAAGCCTCTGGGGGTG 	3
-------------------------------------------------------------------------------------TTAGAAGCCTCTGGGGGTGA 	1
---------------------------------------------------------------------------------------AGAAGCCTCTGGGGGTGACGA 	1
---------------------------------------------------------------------------------------AGAAGCCTCTGGGGGTGAC 	1


Overlaps with: MNEST039497 MNEST051402
Overlaps with miRBase pre-miRNAs: ppt-MIR477d
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
13 Physcomitrella patens GSM313215 CTCTCCCTCAAAGGCTTCCAA GGAAGTCTTTGTTGAAGAGGA up 5 0


Secondary structure

GTGAAGGGTAGTTGATTTTTCCTCTCCCTCAAAGGCTTCCAACGTCCTTTTTGTGAGCAAGCACGCTGGAAGTCTTTGTTGAAGAGGAGGAAACAAATACCTTGAT
----------------TTTTCCTCTCCCTCAAAGGCT 	1
--------------------CCTCTCCCTCAAAGGCTTCCA 	2
--------------------CCTCTCCCTCAAAGGCTTCCAA 	1
---------------------CTCTCCCTCAAAGGCTTCC 	3
---------------------CTCTCCCTCAAAGGCTTCCA 	27
---------------------CTCTCCCTCAAAGGCTTCCAACG 	4
---------------------CTCTCCCTCAAAGGCTTCCAA 	292
---------------------CTCTCCCTCAAAGGCTTCCAAC 	10
----------------------TCTCCCTCAAAGGCTTCCAACGT 	1
----------------------TCTCCCTCAAAGGCTTCCA 	2
----------------------TCTCCCTCAAAGGCTTCCAACG 	3
----------------------TCTCCCTCAAAGGCTTCCAAC 	9
----------------------TCTCCCTCAAAGGCTTCCAA 	26
-----------------------CTCCCTCAAAGGCTTCCAA 	1
------------------------TCCCTCAAAGGCTTCCAACGT 	1
------------------------------------------CGTCCTTTTTGTGAGCAAGC 	1
-----------------------------------------------------TGAGCAAGCACGCTGGAAGT 	1
-----------------------------------------------------------------CTGGAAGTCTTTGTTGAAGAGG 	1
-----------------------------------------------------------------CTGGAAGTCTTTGTTGAAGA 	2
-----------------------------------------------------------------CTGGAAGTCTTTGTTGAAGAGGA 	8
-----------------------------------------------------------------CTGGAAGTCTTTGTTGAAGAG 	1
------------------------------------------------------------------TGGAAGTCTTTGTTGAAGAGGA 	1
-------------------------------------------------------------------GGAAGTCTTTGTTGAAGAGGA 	89
-------------------------------------------------------------------GGAAGTCTTTGTTGAAGAGGAG 	1
-------------------------------------------------------------------GGAAGTCTTTGTTGAAGAGG 	1
--------------------------------------------------------------------GAAGTCTTTGTTGAAGAGGA 	45
--------------------------------------------------------------------GAAGTCTTTGTTGAAGAGGAG 	6
----------------------------------------------------------------------AGTCTTTGTTGAAGAGGAGGA 	1
------------------------------------------------------------------------TCTTTGTTGAAGAGGAGGA 	3
------------------------------------------------------------------------TCTTTGTTGAAGAGGAGGAA 	18
------------------------------------------------------------------------TCTTTGTTGAAGAGGAGGAAA 	23
-------------------------------------------------------------------------CTTTGTTGAAGAGGAGGAAAC 	2


Overlaps with: MNEST039496 MNEST051401
Overlaps with miRBase pre-miRNAs: ppt-MIR477c
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
14 Physcomitrella patens GSM115096 CTCTCCCTCAAAGGCTTCCAA AGAAGCCTCTGTGGGAGAGGA up 3 0


Secondary structure

GGTGCTTGATCCTCTCCCTCAAAGGCTTCCAACAGCATGAGCTAGTTTTAGTGTCTCAAATATTGTCTGTTGAGGCTAGCTCCTGTTCAGATCTGTTAGAAGCCTCTGTGGGAGAGGAGCAATCAG
----------CCTCTCCCTCAAAGGCTTCCA 	1
-----------CTCTCCCTCAAAGGCTTCC 	7
-----------CTCTCCCTCAAAGGCTTCCAA 	576
-----------CTCTCCCTCAAAGGCTTCCA 	453
-----------CTCTCCCTCAAAGGCTTCCAAC 	10
------------TCTCCCTCAAAGGCTTCCAA 	174
------------TCTCCCTCAAAGGCTTCCA 	211
------------TCTCCCTCAAAGGCTTCCAAC 	19
-------------CTCCCTCAAAGGCTTCCAA 	2
--------------TCCCTCAAAGGCTTCCAACAGC 	1
--------------TCCCTCAAAGGCTTCCAACAG 	2
--------------TCCCTCAAAGGCTTCCAACA 	22
---------------CCCTCAAAGGCTTCCAACA 	3
-------------------------------------------------------------------------------------------------AGAAGCCTCTGTGGGAGAGGA 	2


Overlaps with: MNEST039495 MNEST051400
Overlaps with miRBase pre-miRNAs: ppt-MIR477b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
15 Physcomitrella patens GSM115096 CTCTCCCTCAAAGGCTTCCAA AGAAGCCTCTGGGGGTGACGA up 4 0


Secondary structure

ATTGCTTGTTCCTCTCCCTCAAAGGCTTCCAACAACAGGTACTTGGTCTTGTTTTCACCAGCAAAGCTAAGGCCCGTCCCAGATGTTAGAAGCCTCTGGGGGTGACGAAGCAGCAG
----------CCTCTCCCTCAAAGGCTTCCA 	1
-----------CTCTCCCTCAAAGGCTTCC 	7
-----------CTCTCCCTCAAAGGCTTCCAACAAC 	1
-----------CTCTCCCTCAAAGGCTTCCAACAA 	2
-----------CTCTCCCTCAAAGGCTTCCAA 	576
-----------CTCTCCCTCAAAGGCTTCCA 	453
-----------CTCTCCCTCAAAGGCTTCCAAC 	10
------------TCTCCCTCAAAGGCTTCCAA 	174
------------TCTCCCTCAAAGGCTTCCA 	211
------------TCTCCCTCAAAGGCTTCCAAC 	19
-------------CTCCCTCAAAGGCTTCCAACAA 	1
-------------CTCCCTCAAAGGCTTCCAA 	2
--------------TCCCTCAAAGGCTTCCAACAA 	257
--------------TCCCTCAAAGGCTTCCAACAACAG 	5
--------------TCCCTCAAAGGCTTCCAACAACA 	19
--------------TCCCTCAAAGGCTTCCAACAAC 	226
--------------TCCCTCAAAGGCTTCCAACA 	22
---------------CCCTCAAAGGCTTCCAACAAC 	10
---------------CCCTCAAAGGCTTCCAACA 	3
---------------CCCTCAAAGGCTTCCAACAA 	2
---------------CCCTCAAAGGCTTCCAACAACA 	9
----------------CCTCAAAGGCTTCCAACAAC 	1
-----------------CTCAAAGGCTTCCAACAACA 	1
------------------------------------------------------------------------------------GTTAGAAGCCTCTGGGGGTGA 	2
------------------------------------------------------------------------------------GTTAGAAGCCTCTGGGGGTGAC 	1


Overlaps with: MNEST039497 MNEST051402
Overlaps with miRBase pre-miRNAs: ppt-MIR477d
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
16 Physcomitrella patens GSM115096 CTCTCCCTCAAAGGCTTCCAA GGAAGTCTTTGTTGAAGAGGA up 5 0


Secondary structure

GTGAAGGGTAGTTGATTTTTCCTCTCCCTCAAAGGCTTCCAACGTCCTTTTTGTGAGCAAGCACGCTGGAAGTCTTTGTTGAAGAGGAGGAAACAAATACCTTGAT
--------------------CCTCTCCCTCAAAGGCTTCCA 	1
---------------------CTCTCCCTCAAAGGCTTCC 	7
---------------------CTCTCCCTCAAAGGCTTCCAA 	576
---------------------CTCTCCCTCAAAGGCTTCCA 	453
---------------------CTCTCCCTCAAAGGCTTCCAAC 	10
----------------------TCTCCCTCAAAGGCTTCCAACGT 	2
----------------------TCTCCCTCAAAGGCTTCCAACG 	2
----------------------TCTCCCTCAAAGGCTTCCAA 	174
----------------------TCTCCCTCAAAGGCTTCCA 	211
----------------------TCTCCCTCAAAGGCTTCCAAC 	19
-----------------------CTCCCTCAAAGGCTTCCAA 	2
----------------------------------------------------------------GCTGGAAGTCTTTGTTGAAGAGGA 	2
-----------------------------------------------------------------CTGGAAGTCTTTGTTGAAGAGGA 	49
-----------------------------------------------------------------CTGGAAGTCTTTGTTGAAGAG 	6
-----------------------------------------------------------------CTGGAAGTCTTTGTTGAAGAGGAG 	1
-----------------------------------------------------------------CTGGAAGTCTTTGTTGAAGAGG 	7
------------------------------------------------------------------TGGAAGTCTTTGTTGAAGAGG 	4
------------------------------------------------------------------TGGAAGTCTTTGTTGAAGAG 	1
------------------------------------------------------------------TGGAAGTCTTTGTTGAAGA 	2
-------------------------------------------------------------------GGAAGTCTTTGTTGAAGAGGA 	303
-------------------------------------------------------------------GGAAGTCTTTGTTGAAGAGG 	1
--------------------------------------------------------------------GAAGTCTTTGTTGAAGAGGAG 	1
--------------------------------------------------------------------GAAGTCTTTGTTGAAGAGGA 	4
------------------------------------------------------------------------TCTTTGTTGAAGAGGAGGAA 	1
------------------------------------------------------------------------TCTTTGTTGAAGAGGAGGAAA 	14
-------------------------------------------------------------------------CTTTGTTGAAGAGGAGGAAAC 	1
-------------------------------------------------------------------------CTTTGTTGAAGAGGAGGAAA 	1


Overlaps with: MNEST039496 MNEST051401
Overlaps with miRBase pre-miRNAs: ppt-MIR477c
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
17 Physcomitrella patens GSM313216 CTCTCCCTCAAAGGCTTCCAA AGAAGCCTCTGTGGGAGAGGA up 3 0


Secondary structure

GGTGCTTGATCCTCTCCCTCAAAGGCTTCCAACAGCATGAGCTAGTTTTAGTGTCTCAAATATTGTCTGTTGAGGCTAGCTCCTGTTCAGATCTGTTAGAAGCCTCTGTGGGAGAGGAGCAATCAG
-----------CTCTCCCTCAAAGGCTTCC 	5
-----------CTCTCCCTCAAAGGCTTCCA 	70
-----------CTCTCCCTCAAAGGCTTCCAACA 	2
-----------CTCTCCCTCAAAGGCTTCCAAC 	97
-----------CTCTCCCTCAAAGGCTTCCAA 	438
------------TCTCCCTCAAAGGCTTCCAAC 	72
------------TCTCCCTCAAAGGCTTCCAA 	124
------------TCTCCCTCAAAGGCTTCCA 	8
------------TCTCCCTCAAAGGCTTCCAACA 	1
-------------CTCCCTCAAAGGCTTCCAA 	2
--------------TCCCTCAAAGGCTTCCAAC 	19
--------------TCCCTCAAAGGCTTCCAACA 	10
------------------------------------------------------------------------------------------------TAGAAGCCTCTGTGGGAGAGG 	3
-------------------------------------------------------------------------------------------------AGAAGCCTCTGTGGGAGAGGA 	2


Overlaps with: MNEST039495 MNEST051400
Overlaps with miRBase pre-miRNAs: ppt-MIR477b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
18 Physcomitrella patens GSM313216 CTCTCCCTCAAAGGCTTCCAA AGAAGCCTCTGGGGGTGACGA up 4 0


Secondary structure

ATTGCTTGTTCCTCTCCCTCAAAGGCTTCCAACAACAGGTACTTGGTCTTGTTTTCACCAGCAAAGCTAAGGCCCGTCCCAGATGTTAGAAGCCTCTGGGGGTGACGAAGCAGCAG
--------TTCCTCTCCCTCAAAGGCTTC 	1
-----------CTCTCCCTCAAAGGCTTCC 	5
-----------CTCTCCCTCAAAGGCTTCCA 	70
-----------CTCTCCCTCAAAGGCTTCCAACA 	2
-----------CTCTCCCTCAAAGGCTTCCAAC 	97
-----------CTCTCCCTCAAAGGCTTCCAA 	438
------------TCTCCCTCAAAGGCTTCCAAC 	72
------------TCTCCCTCAAAGGCTTCCAA 	124
------------TCTCCCTCAAAGGCTTCCA 	8
------------TCTCCCTCAAAGGCTTCCAACA 	1
-------------CTCCCTCAAAGGCTTCCAA 	2
--------------TCCCTCAAAGGCTTCCAACAACA 	4
--------------TCCCTCAAAGGCTTCCAAC 	19
--------------TCCCTCAAAGGCTTCCAACAACAG 	3
--------------TCCCTCAAAGGCTTCCAACA 	10
--------------TCCCTCAAAGGCTTCCAACAAC 	229
--------------TCCCTCAAAGGCTTCCAACAA 	36
---------------CCCTCAAAGGCTTCCAACAAC 	18
----------------CCTCAAAGGCTTCCAACAAC 	4
----------------------------------------------------------------------------------ATGTTAGAAGCCTCTGGGGGTGAC 	1
------------------------------------------------------------------------------------GTTAGAAGCCTCTGGGGGTG 	8
------------------------------------------------------------------------------------GTTAGAAGCCTCTGGGGGTGA 	204
------------------------------------------------------------------------------------GTTAGAAGCCTCTGGGGGTGAC 	36
-------------------------------------------------------------------------------------TTAGAAGCCTCTGGGGGTGA 	1
--------------------------------------------------------------------------------------TAGAAGCCTCTGGGGGTGA 	1
---------------------------------------------------------------------------------------AGAAGCCTCTGGGGGTGAC 	5


Overlaps with: MNEST039497 MNEST051402
Overlaps with miRBase pre-miRNAs: ppt-MIR477d
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
19 Physcomitrella patens GSM313216 CTCTCCCTCAAAGGCTTCCAA GGAAGTCTTTGTTGAAGAGGA up 5 0


Secondary structure

GTGAAGGGTAGTTGATTTTTCCTCTCCCTCAAAGGCTTCCAACGTCCTTTTTGTGAGCAAGCACGCTGGAAGTCTTTGTTGAAGAGGAGGAAACAAATACCTTGAT
---------------TTTTTCCTCTCCCTCAAAGGC 	1
----------------TTTTCCTCTCCCTCAAAGGCT 	1
------------------TTCCTCTCCCTCAAAGGCTTC 	1
---------------------CTCTCCCTCAAAGGCTTCC 	5
---------------------CTCTCCCTCAAAGGCTTCCA 	70
---------------------CTCTCCCTCAAAGGCTTCCAACG 	2
---------------------CTCTCCCTCAAAGGCTTCCAAC 	97
---------------------CTCTCCCTCAAAGGCTTCCAA 	438
----------------------TCTCCCTCAAAGGCTTCCAACG 	4
----------------------TCTCCCTCAAAGGCTTCCAAC 	72
----------------------TCTCCCTCAAAGGCTTCCAA 	124
----------------------TCTCCCTCAAAGGCTTCCA 	8
-----------------------CTCCCTCAAAGGCTTCCAA 	2
------------------------TCCCTCAAAGGCTTCCAAC 	19
--------------------------------------------------------------ACGCTGGAAGTCTTTGTTGAAGAGGA 	1
----------------------------------------------------------------GCTGGAAGTCTTTGTTGAAGAGGA 	1
-----------------------------------------------------------------CTGGAAGTCTTTGTTGAAGAGGAG 	2
-----------------------------------------------------------------CTGGAAGTCTTTGTTGAAGAGG 	5
-----------------------------------------------------------------CTGGAAGTCTTTGTTGAAGAGGA 	24
-----------------------------------------------------------------CTGGAAGTCTTTGTTGAAGA 	1
-----------------------------------------------------------------CTGGAAGTCTTTGTTGAAGAG 	1
------------------------------------------------------------------TGGAAGTCTTTGTTGAAGAG 	1
-------------------------------------------------------------------GGAAGTCTTTGTTGAAGAGGAG 	1
-------------------------------------------------------------------GGAAGTCTTTGTTGAAGAGGA 	17
-------------------------------------------------------------------GGAAGTCTTTGTTGAAGAGG 	1
--------------------------------------------------------------------GAAGTCTTTGTTGAAGAGGA 	3
--------------------------------------------------------------------GAAGTCTTTGTTGAAGAGGAG 	6
------------------------------------------------------------------------TCTTTGTTGAAGAGGAGGAA 	1
------------------------------------------------------------------------TCTTTGTTGAAGAGGAGGA 	4
------------------------------------------------------------------------TCTTTGTTGAAGAGGAGGAAA 	8
-------------------------------------------------------------------------CTTTGTTGAAGAGGAGGAAAC 	6
--------------------------------------------------------------------------TTTGTTGAAGAGGAGGAAA 	1
--------------------------------------------------------------------------TTTGTTGAAGAGGAGGAAACA 	3
--------------------------------------------------------------------------TTTGTTGAAGAGGAGGAAAC 	1


Overlaps with: MNEST039496 MNEST051401
Overlaps with miRBase pre-miRNAs: ppt-MIR477c
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
20 Physcomitrella patens GSM313214 CTCTCCCTCAAAGGCTTCCAA AGAAGCCTCTGTGGGAGAGGA up 3 0


Secondary structure

GGTGCTTGATCCTCTCCCTCAAAGGCTTCCAACAGCATGAGCTAGTTTTAGTGTCTCAAATATTGTCTGTTGAGGCTAGCTCCTGTTCAGATCTGTTAGAAGCCTCTGTGGGAGAGGAGCAATCAG
----------CCTCTCCCTCAAAGGCTTC 	1
----------CCTCTCCCTCAAAGGCTTCCA 	2
-----------CTCTCCCTCAAAGGCTTCC 	1
-----------CTCTCCCTCAAAGGCTTCCA 	100
-----------CTCTCCCTCAAAGGCTTCCAA 	507
-----------CTCTCCCTCAAAGGCTTCCAAC 	18
------------TCTCCCTCAAAGGCTTCCA 	18
------------TCTCCCTCAAAGGCTTCCAAC 	15
------------TCTCCCTCAAAGGCTTCCAA 	82
-------------CTCCCTCAAAGGCTTCCAA 	2
--------------TCCCTCAAAGGCTTCCAAC 	1
--------------TCCCTCAAAGGCTTCCAACA 	3
------------------------------------------------------------------------------------------------TAGAAGCCTCTGTGGGAGAGG 	2
-------------------------------------------------------------------------------------------------AGAAGCCTCTGTGGGAGAGGA 	7


Overlaps with: MNEST039495 MNEST051400
Overlaps with miRBase pre-miRNAs: ppt-MIR477b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
21 Physcomitrella patens GSM313214 CTCTCCCTCAAAGGCTTCCAA AGAAGCCTCTGGGGGTGACGA up 4 0


Secondary structure

ATTGCTTGTTCCTCTCCCTCAAAGGCTTCCAACAACAGGTACTTGGTCTTGTTTTCACCAGCAAAGCTAAGGCCCGTCCCAGATGTTAGAAGCCTCTGGGGGTGACGAAGCAGCAG
----------CCTCTCCCTCAAAGGCTTC 	1
----------CCTCTCCCTCAAAGGCTTCCA 	2
-----------CTCTCCCTCAAAGGCTTCC 	1
-----------CTCTCCCTCAAAGGCTTCCA 	100
-----------CTCTCCCTCAAAGGCTTCCAA 	507
-----------CTCTCCCTCAAAGGCTTCCAAC 	18
------------TCTCCCTCAAAGGCTTCCA 	18
------------TCTCCCTCAAAGGCTTCCAAC 	15
------------TCTCCCTCAAAGGCTTCCAA 	82
-------------CTCCCTCAAAGGCTTCCAA 	2
--------------TCCCTCAAAGGCTTCCAACAAC 	33
--------------TCCCTCAAAGGCTTCCAAC 	1
--------------TCCCTCAAAGGCTTCCAACAA 	27
--------------TCCCTCAAAGGCTTCCAACA 	3
---------------CCCTCAAAGGCTTCCAACAAC 	1
---------------CCCTCAAAGGCTTCCAACAA 	1
----------------CCTCAAAGGCTTCCAACAAC 	1
------------------------------------------------------------------------------------GTTAGAAGCCTCTGGGGGTGA 	39
------------------------------------------------------------------------------------GTTAGAAGCCTCTGGGGGTG 	2
------------------------------------------------------------------------------------GTTAGAAGCCTCTGGGGGTGAC 	2
--------------------------------------------------------------------------------------TAGAAGCCTCTGGGGGTGA 	1
---------------------------------------------------------------------------------------AGAAGCCTCTGGGGGTGAC 	1


Overlaps with: MNEST039497 MNEST051402
Overlaps with miRBase pre-miRNAs: ppt-MIR477d
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
22 Physcomitrella patens GSM313214 CTCTCCCTCAAAGGCTTCCAA GGAAGTCTTTGTTGAAGAGGA up 5 0


Secondary structure

GTGAAGGGTAGTTGATTTTTCCTCTCCCTCAAAGGCTTCCAACGTCCTTTTTGTGAGCAAGCACGCTGGAAGTCTTTGTTGAAGAGGAGGAAACAAATACCTTGAT
----------------TTTTCCTCTCCCTCAAAGGCT 	3
--------------------CCTCTCCCTCAAAGGCTTC 	1
--------------------CCTCTCCCTCAAAGGCTTCCA 	2
---------------------CTCTCCCTCAAAGGCTTCC 	1
---------------------CTCTCCCTCAAAGGCTTCCA 	100
---------------------CTCTCCCTCAAAGGCTTCCAACG 	2
---------------------CTCTCCCTCAAAGGCTTCCAA 	507
---------------------CTCTCCCTCAAAGGCTTCCAAC 	18
----------------------TCTCCCTCAAAGGCTTCCAACGT 	1
----------------------TCTCCCTCAAAGGCTTCCAACG 	3
----------------------TCTCCCTCAAAGGCTTCCA 	18
----------------------TCTCCCTCAAAGGCTTCCAAC 	15
----------------------TCTCCCTCAAAGGCTTCCAA 	82
-----------------------CTCCCTCAAAGGCTTCCAA 	2
------------------------TCCCTCAAAGGCTTCCAAC 	1
-----------------------------------------------------------------CTGGAAGTCTTTGTTGAAGAGG 	1
-----------------------------------------------------------------CTGGAAGTCTTTGTTGAAGA 	1
-----------------------------------------------------------------CTGGAAGTCTTTGTTGAAGAGGA 	10
-------------------------------------------------------------------GGAAGTCTTTGTTGAAGAGGA 	132
--------------------------------------------------------------------GAAGTCTTTGTTGAAGAGGA 	39
--------------------------------------------------------------------GAAGTCTTTGTTGAAGAGGAG 	11
------------------------------------------------------------------------TCTTTGTTGAAGAGGAGGA 	2
------------------------------------------------------------------------TCTTTGTTGAAGAGGAGGAAA 	27
------------------------------------------------------------------------TCTTTGTTGAAGAGGAGGAA 	23
-------------------------------------------------------------------------CTTTGTTGAAGAGGAGGAAACA 	1
-------------------------------------------------------------------------CTTTGTTGAAGAGGAGGAAA 	2
-------------------------------------------------------------------------CTTTGTTGAAGAGGAGGAAAC 	3
-------------------------------------------------------------------------CTTTGTTGAAGAGGAGGAA 	2


Overlaps with: MNEST039496 MNEST051401
Overlaps with miRBase pre-miRNAs: ppt-MIR477c
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
23 Physcomitrella patens GSM313217 CTCTCCCTCAAAGGCTTCCAA AGAAGCCTCTGTGGGAGAGGA up 3 0


Secondary structure

GGTGCTTGATCCTCTCCCTCAAAGGCTTCCAACAGCATGAGCTAGTTTTAGTGTCTCAAATATTGTCTGTTGAGGCTAGCTCCTGTTCAGATCTGTTAGAAGCCTCTGTGGGAGAGGAGCAATCAG
----------CCTCTCCCTCAAAGGCTTCCA 	1
----------CCTCTCCCTCAAAGGCTTCCAAC 	1
-----------CTCTCCCTCAAAGGCTTCCAA 	381
-----------CTCTCCCTCAAAGGCTTCCA 	63
-----------CTCTCCCTCAAAGGCTTCC 	4
-----------CTCTCCCTCAAAGGCTTCCAACA 	1
-----------CTCTCCCTCAAAGGCTTCCAAC 	70
------------TCTCCCTCAAAGGCTTCCAAC 	71
------------TCTCCCTCAAAGGCTTCCAA 	132
------------TCTCCCTCAAAGGCTTCCA 	11
-------------CTCCCTCAAAGGCTTCCAA 	2
--------------TCCCTCAAAGGCTTCCAAC 	6
--------------TCCCTCAAAGGCTTCCAACA 	7
---------------CCCTCAAAGGCTTCCAACA 	1
----------------------------------------------------------------------------------------------GTTAGAAGCCTCTGTGGGAGA 	1
-------------------------------------------------------------------------------------------------AGAAGCCTCTGTGGGAGAGGA 	3


Overlaps with: MNEST039495 MNEST051400
Overlaps with miRBase pre-miRNAs: ppt-MIR477b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
24 Physcomitrella patens GSM313217 CTCTCCCTCAAAGGCTTCCAA AGAAGCCTCTGGGGGTGACGA up 4 0


Secondary structure

ATTGCTTGTTCCTCTCCCTCAAAGGCTTCCAACAACAGGTACTTGGTCTTGTTTTCACCAGCAAAGCTAAGGCCCGTCCCAGATGTTAGAAGCCTCTGGGGGTGACGAAGCAGCAG
----------CCTCTCCCTCAAAGGCTTCCA 	1
----------CCTCTCCCTCAAAGGCTTCCAAC 	1
-----------CTCTCCCTCAAAGGCTTCCAA 	381
-----------CTCTCCCTCAAAGGCTTCCA 	63
-----------CTCTCCCTCAAAGGCTTCC 	4
-----------CTCTCCCTCAAAGGCTTCCAACA 	1
-----------CTCTCCCTCAAAGGCTTCCAAC 	70
------------TCTCCCTCAAAGGCTTCCAAC 	71
------------TCTCCCTCAAAGGCTTCCAA 	132
------------TCTCCCTCAAAGGCTTCCA 	11
-------------CTCCCTCAAAGGCTTCCAA 	2
--------------TCCCTCAAAGGCTTCCAACAACA 	7
--------------TCCCTCAAAGGCTTCCAAC 	6
--------------TCCCTCAAAGGCTTCCAACA 	7
--------------TCCCTCAAAGGCTTCCAACAAC 	237
--------------TCCCTCAAAGGCTTCCAACAACAG 	3
--------------TCCCTCAAAGGCTTCCAACAA 	31
---------------CCCTCAAAGGCTTCCAACAACA 	1
---------------CCCTCAAAGGCTTCCAACA 	1
---------------CCCTCAAAGGCTTCCAACAAC 	13
----------------CCTCAAAGGCTTCCAACAAC 	2
------------------------------------------------------------------------------------GTTAGAAGCCTCTGGGGGTGA 	204
------------------------------------------------------------------------------------GTTAGAAGCCTCTGGGGGTG 	6
------------------------------------------------------------------------------------GTTAGAAGCCTCTGGGGGT 	1
------------------------------------------------------------------------------------GTTAGAAGCCTCTGGGGGTGAC 	34
-------------------------------------------------------------------------------------TTAGAAGCCTCTGGGGGTGACG 	1
---------------------------------------------------------------------------------------AGAAGCCTCTGGGGGTGAC 	8


Overlaps with: MNEST039497 MNEST051402
Overlaps with miRBase pre-miRNAs: ppt-MIR477d
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
25 Physcomitrella patens GSM313217 CTCTCCCTCAAAGGCTTCCAA GGAAGTCTTTGTTGAAGAGGA up 5 0


Secondary structure

GTGAAGGGTAGTTGATTTTTCCTCTCCCTCAAAGGCTTCCAACGTCCTTTTTGTGAGCAAGCACGCTGGAAGTCTTTGTTGAAGAGGAGGAAACAAATACCTTGAT
---------------TTTTTCCTCTCCCTCAAAGGC 	2
----------------TTTTCCTCTCCCTCAAAGGC 	1
----------------TTTTCCTCTCCCTCAAAGGCT 	2
--------------------CCTCTCCCTCAAAGGCTTCCA 	1
--------------------CCTCTCCCTCAAAGGCTTCCAAC 	1
---------------------CTCTCCCTCAAAGGCTTCCAACGT 	1
---------------------CTCTCCCTCAAAGGCTTCCAA 	381
---------------------CTCTCCCTCAAAGGCTTCCA 	63
---------------------CTCTCCCTCAAAGGCTTCC 	4
---------------------CTCTCCCTCAAAGGCTTCCAACG 	2
---------------------CTCTCCCTCAAAGGCTTCCAAC 	70
----------------------TCTCCCTCAAAGGCTTCCAACGT 	1
----------------------TCTCCCTCAAAGGCTTCCAACG 	5
----------------------TCTCCCTCAAAGGCTTCCAAC 	71
----------------------TCTCCCTCAAAGGCTTCCAA 	132
----------------------TCTCCCTCAAAGGCTTCCA 	11
-----------------------CTCCCTCAAAGGCTTCCAA 	2
------------------------TCCCTCAAAGGCTTCCAAC 	6
----------------------------------------------------------------GCTGGAAGTCTTTGTTGAAGAGGA 	1
-----------------------------------------------------------------CTGGAAGTCTTTGTTGAAGAGGAG 	2
-----------------------------------------------------------------CTGGAAGTCTTTGTTGAAGAGG 	3
-----------------------------------------------------------------CTGGAAGTCTTTGTTGAAGAGGA 	29
------------------------------------------------------------------TGGAAGTCTTTGTTGAAGAGGAG 	1
-------------------------------------------------------------------GGAAGTCTTTGTTGAAGAGGAG 	1
-------------------------------------------------------------------GGAAGTCTTTGTTGAAGAGGA 	11
-------------------------------------------------------------------GGAAGTCTTTGTTGAAGAGG 	1
--------------------------------------------------------------------GAAGTCTTTGTTGAAGAGGA 	1
--------------------------------------------------------------------GAAGTCTTTGTTGAAGAGGAG 	4
------------------------------------------------------------------------TCTTTGTTGAAGAGGAGGA 	2
------------------------------------------------------------------------TCTTTGTTGAAGAGGAGGAAA 	12
-------------------------------------------------------------------------CTTTGTTGAAGAGGAGGAA 	1
-------------------------------------------------------------------------CTTTGTTGAAGAGGAGGAAA 	1
-------------------------------------------------------------------------CTTTGTTGAAGAGGAGGAAAC 	7
--------------------------------------------------------------------------TTTGTTGAAGAGGAGGAAACA 	1


Overlaps with: MNEST039496 MNEST051401
Overlaps with miRBase pre-miRNAs: ppt-MIR477c
HuntMi prediction: true miRNA