miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

Please select library, species and/or miRNA sequence.

selected mature miRNA sequence: CTGAAGTGTTTGGGGGAACTC

selected species: Arabidopsis thaliana

18 records found

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
1	Arabidopsis thaliana	GSM304282	CTGAAGTGTTTGGGGGAACTC	GTTCCTCTGAGCACTTCATTG	down	1	0

Secondary structure

TCTTGGTTGGATGTCTCCTAGAGTTCCTCTGAGCACTTCATTGGGGATACAATTTTTCTAAATGATTATCCACTGAAGTGTTTGGGGGAACTCCCGGACCCATTCAACGGAT
----------------------GTTCCTCTGAGCACTTCATT 	1
----------------------GTTCCTCTGAGCACTTCAT 	1
------------------------------------------------------------------------CTGAAGTGTTTGGGGGAACTC 	15
------------------------------------------------------------------------CTGAAGTGTTTGGGGGAACT 	3
-------------------------------------------------------------------------TGAAGTGTTTGGGGGAACTC 	2

Overlaps with: MNEST040079 MNEST047002
Overlaps with miRBase pre-miRNAs: ath-MIR395a
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
2	Arabidopsis thaliana	GSM304282	CTGAAGTGTTTGGGGGAACTC	GTTCCTCTGAGCACTTCATTG	down	1	0

Secondary structure

GATGTTTTCTAGAGTTCCTCTGAGCACTTCATTGGAGATACAATTTTTTATAAAATAGTTTTCTACTGAAGTGTTTGGGGGAACTCCCGGGCTGAT
-------------GTTCCTCTGAGCACTTCATT 	1
-------------GTTCCTCTGAGCACTTCAT 	1
-----------------------------------------------------------------CTGAAGTGTTTGGGGGAACTC 	15
-----------------------------------------------------------------CTGAAGTGTTTGGGGGAACT 	3
------------------------------------------------------------------TGAAGTGTTTGGGGGAACTC 	2

Overlaps with: MNEST040083 MNEST047006
Overlaps with miRBase pre-miRNAs: ath-MIR395e
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
3	Arabidopsis thaliana	GSM304282	CTGAAGTGTTTGGGGGAACTC	GTTCTCCTGAACACTTCATTG	down	1	0

Secondary structure

ATTCGACTAGATGTCCTCTAGAGTTCTCCTGAACACTTCATTGGAAATTTGTTATTCAGTAAGCTAACAGTTAATTCCACTGAAGTGTTTGGGGGAACTCCCGATGTCATTTGGTGATG
----------------------GTTCTCCTGAACACTTCATT 	1
-------------------------------------------------------------------------------CTGAAGTGTTTGGGGGAACTC 	15
-------------------------------------------------------------------------------CTGAAGTGTTTGGGGGAACT 	3
--------------------------------------------------------------------------------TGAAGTGTTTGGGGGAACTC 	2

Overlaps with: MNEST040082 MNEST047005
Overlaps with miRBase pre-miRNAs: ath-MIR395d
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
4	Arabidopsis thaliana	GSM415786-5994	CTGAAGTGTTTGGGGGAACTC	GTTCCTCTGAGCACTTCATTG	down	1	0

Secondary structure

TCTTGGTTGGATGTCTCCTAGAGTTCCTCTGAGCACTTCATTGGGGATACAATTTTTCTAAATGATTATCCACTGAAGTGTTTGGGGGAACTCCCGGACCCATTCAACGGAT
------------------------------------------------------------------------CTGAAGTGTTTGGGGGAACTC 	34
------------------------------------------------------------------------CTGAAGTGTTTGGGGGAACT 	1
-------------------------------------------------------------------------TGAAGTGTTTGGGGGAACTC 	1

Overlaps with: MNEST040079 MNEST047002
Overlaps with miRBase pre-miRNAs: ath-MIR395a
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
5	Arabidopsis thaliana	GSM415786-5994	CTGAAGTGTTTGGGGGAACTC	GTTCCTCTGAGCACTTCATTG	down	1	0

Secondary structure

GATGTTTTCTAGAGTTCCTCTGAGCACTTCATTGGAGATACAATTTTTTATAAAATAGTTTTCTACTGAAGTGTTTGGGGGAACTCCCGGGCTGAT
-----------------------------------------------------------------CTGAAGTGTTTGGGGGAACTC 	34
-----------------------------------------------------------------CTGAAGTGTTTGGGGGAACT 	1
------------------------------------------------------------------TGAAGTGTTTGGGGGAACTC 	1

Overlaps with: MNEST040083 MNEST047006
Overlaps with miRBase pre-miRNAs: ath-MIR395e
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
6	Arabidopsis thaliana	GSM415786-5994	CTGAAGTGTTTGGGGGAACTC	GTTCTCCTGAACACTTCATTG	down	1	0

Secondary structure

ATTCGACTAGATGTCCTCTAGAGTTCTCCTGAACACTTCATTGGAAATTTGTTATTCAGTAAGCTAACAGTTAATTCCACTGAAGTGTTTGGGGGAACTCCCGATGTCATTTGGTGATG
-------------------------------------------------------------------------------CTGAAGTGTTTGGGGGAACTC 	34
-------------------------------------------------------------------------------CTGAAGTGTTTGGGGGAACT 	1
--------------------------------------------------------------------------------TGAAGTGTTTGGGGGAACTC 	1

Overlaps with: MNEST040082 MNEST047005
Overlaps with miRBase pre-miRNAs: ath-MIR395d
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
7	Arabidopsis thaliana	GSM415785	CTGAAGTGTTTGGGGGAACTC	GTTCTCCTGAACACTTCATTG	down	1	0

Secondary structure

ATTCGACTAGATGTCCTCTAGAGTTCTCCTGAACACTTCATTGGAAATTTGTTATTCAGTAAGCTAACAGTTAATTCCACTGAAGTGTTTGGGGGAACTCCCGATGTCATTTGGTGATG
------------------------------------------------------------------------------ACTGAAGTGTTTGGGGGAACTC 	1
-------------------------------------------------------------------------------CTGAAGTGTTTGGGGGAACTC 	5
-------------------------------------------------------------------------------CTGAAGTGTTTGGGGGAACT 	1

Overlaps with: MNEST040082 MNEST047005
Overlaps with miRBase pre-miRNAs: ath-MIR395d
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
8	Arabidopsis thaliana	GSM415785	CTGAAGTGTTTGGGGGAACTC	GTTCCTCTGAGCACTTCATTG	down	1	0

Secondary structure

TCTTGGTTGGATGTCTCCTAGAGTTCCTCTGAGCACTTCATTGGGGATACAATTTTTCTAAATGATTATCCACTGAAGTGTTTGGGGGAACTCCCGGACCCATTCAACGGAT
-----------------------------------------------------------------------ACTGAAGTGTTTGGGGGAACTC 	1
------------------------------------------------------------------------CTGAAGTGTTTGGGGGAACTC 	5
------------------------------------------------------------------------CTGAAGTGTTTGGGGGAACT 	1

Overlaps with: MNEST040079 MNEST047002
Overlaps with miRBase pre-miRNAs: ath-MIR395a
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
9	Arabidopsis thaliana	GSM415785	CTGAAGTGTTTGGGGGAACTC	GTTCCTCTGAGCACTTCATTG	down	1	0

Secondary structure

GATGTTTTCTAGAGTTCCTCTGAGCACTTCATTGGAGATACAATTTTTTATAAAATAGTTTTCTACTGAAGTGTTTGGGGGAACTCCCGGGCTGAT
----------------------------------------------------------------ACTGAAGTGTTTGGGGGAACTC 	1
-----------------------------------------------------------------CTGAAGTGTTTGGGGGAACTC 	5
-----------------------------------------------------------------CTGAAGTGTTTGGGGGAACT 	1

Overlaps with: MNEST040083 MNEST047006
Overlaps with miRBase pre-miRNAs: ath-MIR395e
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
10	Arabidopsis thaliana	GSM366870	CTGAAGTGTTTGGGGGAACTC	GTTCCTCTGAGCACTTCATTG	down	1	0

Secondary structure

GATGTTTTCTAGAGTTCCTCTGAGCACTTCATTGGAGATACAATTTTTTATAAAATAGTTTTCTACTGAAGTGTTTGGGGGAACTCCCGGGCTGAT
-------------GTTCCTCTGAGCACTTCATTG 	1
-----------------------------------------------------------------CTGAAGTGTTTGGGGGAACTCC 	1
-----------------------------------------------------------------CTGAAGTGTTTGGGGGAACTC 	22
------------------------------------------------------------------TGAAGTGTTTGGGGGAACTC 	1

Overlaps with: MNEST040083 MNEST047006
Overlaps with miRBase pre-miRNAs: ath-MIR395e
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
11	Arabidopsis thaliana	GSM366870	CTGAAGTGTTTGGGGGAACTC	GTTCTCCTGAACACTTCATTG	down	1	0

Secondary structure

ATTCGACTAGATGTCCTCTAGAGTTCTCCTGAACACTTCATTGGAAATTTGTTATTCAGTAAGCTAACAGTTAATTCCACTGAAGTGTTTGGGGGAACTCCCGATGTCATTTGGTGATG
-------------------------------------------------------------------------------CTGAAGTGTTTGGGGGAACTCC 	1
-------------------------------------------------------------------------------CTGAAGTGTTTGGGGGAACTC 	22
--------------------------------------------------------------------------------TGAAGTGTTTGGGGGAACTC 	1

Overlaps with: MNEST040082 MNEST047005
Overlaps with miRBase pre-miRNAs: ath-MIR395d
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
12	Arabidopsis thaliana	GSM366870	CTGAAGTGTTTGGGGGAACTC	GTTCCTCTGAGCACTTCATTG	down	1	0

Secondary structure

TCTTGGTTGGATGTCTCCTAGAGTTCCTCTGAGCACTTCATTGGGGATACAATTTTTCTAAATGATTATCCACTGAAGTGTTTGGGGGAACTCCCGGACCCATTCAACGGAT
----------------------GTTCCTCTGAGCACTTCATTG 	1
------------------------------------------------------------------------CTGAAGTGTTTGGGGGAACTCC 	1
------------------------------------------------------------------------CTGAAGTGTTTGGGGGAACTC 	22
-------------------------------------------------------------------------TGAAGTGTTTGGGGGAACTC 	1

Overlaps with: MNEST040079 MNEST047002
Overlaps with miRBase pre-miRNAs: ath-MIR395a
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
13	Arabidopsis thaliana	GSM304283	CTGAAGTGTTTGGGGGAACTC	GTTCCTCTGAGCACTTCATTG	down	1	0

Secondary structure

TCTTGGTTGGATGTCTCCTAGAGTTCCTCTGAGCACTTCATTGGGGATACAATTTTTCTAAATGATTATCCACTGAAGTGTTTGGGGGAACTCCCGGACCCATTCAACGGAT
-----------------------------------------------------------------------ACTGAAGTGTTTGGGGGAACT 	1
------------------------------------------------------------------------CTGAAGTGTTTGGGGGAACTC 	11
------------------------------------------------------------------------CTGAAGTGTTTGGGGGAACT 	2
-------------------------------------------------------------------------TGAAGTGTTTGGGGGAACTC 	2

Overlaps with: MNEST040079 MNEST047002
Overlaps with miRBase pre-miRNAs: ath-MIR395a
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
14	Arabidopsis thaliana	GSM304283	CTGAAGTGTTTGGGGGAACTC	GTTCCTCTGAGCACTTCATTG	down	1	0

Secondary structure

GATGTTTTCTAGAGTTCCTCTGAGCACTTCATTGGAGATACAATTTTTTATAAAATAGTTTTCTACTGAAGTGTTTGGGGGAACTCCCGGGCTGAT
----------------------------------------------------------------ACTGAAGTGTTTGGGGGAACT 	1
-----------------------------------------------------------------CTGAAGTGTTTGGGGGAACTC 	11
-----------------------------------------------------------------CTGAAGTGTTTGGGGGAACT 	2
------------------------------------------------------------------TGAAGTGTTTGGGGGAACTC 	2

Overlaps with: MNEST040083 MNEST047006
Overlaps with miRBase pre-miRNAs: ath-MIR395e
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
15	Arabidopsis thaliana	GSM304283	CTGAAGTGTTTGGGGGAACTC	GTTCTCCTGAACACTTCATTG	down	1	0

Secondary structure

ATTCGACTAGATGTCCTCTAGAGTTCTCCTGAACACTTCATTGGAAATTTGTTATTCAGTAAGCTAACAGTTAATTCCACTGAAGTGTTTGGGGGAACTCCCGATGTCATTTGGTGATG
------------------------------------------------------------------------------ACTGAAGTGTTTGGGGGAACT 	1
-------------------------------------------------------------------------------CTGAAGTGTTTGGGGGAACTC 	11
-------------------------------------------------------------------------------CTGAAGTGTTTGGGGGAACT 	2
--------------------------------------------------------------------------------TGAAGTGTTTGGGGGAACTC 	2

Overlaps with: MNEST040082 MNEST047005
Overlaps with miRBase pre-miRNAs: ath-MIR395d
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
16	Arabidopsis thaliana	GSM518432-13544	CTGAAGTGTTTGGGGGAACTC	GTTCTCCTGAACACTTCATTG	down	1	0

Secondary structure

ATTCGACTAGATGTCCTCTAGAGTTCTCCTGAACACTTCATTGGAAATTTGTTATTCAGTAAGCTAACAGTTAATTCCACTGAAGTGTTTGGGGGAACTCCCGATGTCATTTGGTGATG
-------------------------------------------------------------------------------CTGAAGTGTTTGGGGGAACTC 	36
--------------------------------------------------------------------------------TGAAGTGTTTGGGGGAACTCC 	2
--------------------------------------------------------------------------------TGAAGTGTTTGGGGGAACTC 	1
-----------------------------------------------------------------------------------AGTGTTTGGGGGAACTCCCG 	1

Overlaps with: MNEST040082 MNEST047005
Overlaps with miRBase pre-miRNAs: ath-MIR395d
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
17	Arabidopsis thaliana	GSM518432-13544	CTGAAGTGTTTGGGGGAACTC	GTTCCTCTGAGCACTTCATTG	down	1	0

Secondary structure

TCTTGGTTGGATGTCTCCTAGAGTTCCTCTGAGCACTTCATTGGGGATACAATTTTTCTAAATGATTATCCACTGAAGTGTTTGGGGGAACTCCCGGACCCATTCAACGGAT
----------------------GTTCCTCTGAGCACTTCAT 	1
----------------------GTTCCTCTGAGCACTTCATT 	1
----------------------GTTCCTCTGAGCACTTCATTG 	3
------------------------------------------------------------------------CTGAAGTGTTTGGGGGAACTC 	36
-------------------------------------------------------------------------TGAAGTGTTTGGGGGAACTCC 	2
-------------------------------------------------------------------------TGAAGTGTTTGGGGGAACTC 	1
----------------------------------------------------------------------------AGTGTTTGGGGGAACTCCCG 	1

Overlaps with: MNEST040079 MNEST047002
Overlaps with miRBase pre-miRNAs: ath-MIR395a
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
18	Arabidopsis thaliana	GSM518432-13544	CTGAAGTGTTTGGGGGAACTC	GTTCCTCTGAGCACTTCATTG	down	1	0

Secondary structure

GATGTTTTCTAGAGTTCCTCTGAGCACTTCATTGGAGATACAATTTTTTATAAAATAGTTTTCTACTGAAGTGTTTGGGGGAACTCCCGGGCTGAT
-------------GTTCCTCTGAGCACTTCAT 	1
-------------GTTCCTCTGAGCACTTCATT 	1
-------------GTTCCTCTGAGCACTTCATTG 	3
-----------------------------------------------------------------CTGAAGTGTTTGGGGGAACTC 	36
------------------------------------------------------------------TGAAGTGTTTGGGGGAACTCC 	2
------------------------------------------------------------------TGAAGTGTTTGGGGGAACTC 	1
---------------------------------------------------------------------AGTGTTTGGGGGAACTCCCG 	1

Overlaps with: MNEST040083 MNEST047006
Overlaps with miRBase pre-miRNAs: ath-MIR395e
HuntMi prediction: true miRNA