miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

Please select library, species and/or miRNA sequence.

selected mature miRNA sequence: CTGAAGTGTTTGGGGGGACTC

selected species: Arabidopsis thaliana

21 records found

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
1	Arabidopsis thaliana	GSM415786-5994	CTGAAGTGTTTGGGGGGACTC	GTTCCCTTTAACGCTTCATTG	down	2	0

Secondary structure

AGAGAGTCAAATGTCCCCATGAGTTCCCTTTAACGCTTCATTGTTAAATACTCAAAGCCACATTGGTTTGTATACAACACTGAAGTGTTTGGGGGGACTCTTGGTGTCATTCTGGCGTA
----------------------GTTCCCTTTAACGCTTCATTG 	8
----------------------GTTCCCTTTAACGCTTCATT 	13
----------------------GTTCCCTTTAACGCTTCAT 	3
-------------------------------------------------------------------------------CTGAAGTGTTTGGGGGGACTC 	29
-------------------------------------------------------------------------------CTGAAGTGTTTGGGGGGAC 	2

Overlaps with: MNEST040080 MNEST047003
Overlaps with miRBase pre-miRNAs: ath-MIR395b
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
2	Arabidopsis thaliana	GSM415786-5994	CTGAAGTGTTTGGGGGGACTC	GTTCCCTTTAACGCTTCATTG	down	2	0

Secondary structure

AAGAAAGTCAAATGTCCACATGAGTTCCCTTTAACGCTTCATTGTTGAATACTCAAAGCCACATTGGTTTGTATATAACACTGAAGTGTTTGGGGGGACTCTTGGTGTCATTCTGGCGTTG
-----------------------GTTCCCTTTAACGCTTCATTG 	8
-----------------------GTTCCCTTTAACGCTTCATT 	13
-----------------------GTTCCCTTTAACGCTTCAT 	3
--------------------------------------------------------------------------------CTGAAGTGTTTGGGGGGACTC 	29
--------------------------------------------------------------------------------CTGAAGTGTTTGGGGGGAC 	2

Overlaps with: MNEST040081 MNEST047004
Overlaps with miRBase pre-miRNAs: ath-MIR395c
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
3	Arabidopsis thaliana	GSM415786-5994	CTGAAGTGTTTGGGGGGACTC	GTTCCCTTAAACGCTTCATTG	down	1	0

Secondary structure

GACATAACATGTAAAGTCAAATGTCCCCTTGAGTTCCCTTAAACGCTTCATTGTTCATACTTTGTTATCATCTATCGATCGATCAATCAATCTGATGAACACTGAAGTGTTTGGGGGGACTCTAGGTGACATCTTGGCACCCACAGGCTAT
--------------------------------GTTCCCTTAAACGCTTCATTG 	1
-----------------------------------------------------------------------------------------------------CTGAAGTGTTTGGGGGGACTC 	29
-----------------------------------------------------------------------------------------------------CTGAAGTGTTTGGGGGGAC 	2

Overlaps with: MNEST040084 MNEST047007
Overlaps with miRBase pre-miRNAs: ath-MIR395f
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
4	Arabidopsis thaliana	GSM366870	CTGAAGTGTTTGGGGGGACTC	GTTCCCTTTAACGCTTCATTG	down	2	0

Secondary structure

AGAGAGTCAAATGTCCCCATGAGTTCCCTTTAACGCTTCATTGTTAAATACTCAAAGCCACATTGGTTTGTATACAACACTGAAGTGTTTGGGGGGACTCTTGGTGTCATTCTGGCGTA
----------------------GTTCCCTTTAACGCTTCATT 	1
-------------------------------------------------------------------------------CTGAAGTGTTTGGGGGGACTC 	25

Overlaps with: MNEST040080 MNEST047003
Overlaps with miRBase pre-miRNAs: ath-MIR395b
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
5	Arabidopsis thaliana	GSM366870	CTGAAGTGTTTGGGGGGACTC	GTTCCCTTTAACGCTTCATTG	down	2	0

Secondary structure

AAGAAAGTCAAATGTCCACATGAGTTCCCTTTAACGCTTCATTGTTGAATACTCAAAGCCACATTGGTTTGTATATAACACTGAAGTGTTTGGGGGGACTCTTGGTGTCATTCTGGCGTTG
-----------------------GTTCCCTTTAACGCTTCATT 	1
--------------------------------------------------------------------------------CTGAAGTGTTTGGGGGGACTC 	25

Overlaps with: MNEST040081 MNEST047004
Overlaps with miRBase pre-miRNAs: ath-MIR395c
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
6	Arabidopsis thaliana	GSM366870	CTGAAGTGTTTGGGGGGACTC	GTTCCCTTAAACGCTTCATTG	down	1	0

Secondary structure

GACATAACATGTAAAGTCAAATGTCCCCTTGAGTTCCCTTAAACGCTTCATTGTTCATACTTTGTTATCATCTATCGATCGATCAATCAATCTGATGAACACTGAAGTGTTTGGGGGGACTCTAGGTGACATCTTGGCACCCACAGGCTAT
-----------------------------------------------------------------------------------------------------CTGAAGTGTTTGGGGGGACTC 	25

Overlaps with: MNEST040084 MNEST047007
Overlaps with miRBase pre-miRNAs: ath-MIR395f
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
7	Arabidopsis thaliana	GSM366869	CTGAAGTGTTTGGGGGGACTC	GTTCCCTTTAACGCTTCATTG	down	2	0

Secondary structure

AAGAAAGTCAAATGTCCACATGAGTTCCCTTTAACGCTTCATTGTTGAATACTCAAAGCCACATTGGTTTGTATATAACACTGAAGTGTTTGGGGGGACTCTTGGTGTCATTCTGGCGTTG
--------------------------------------------------------------------------------CTGAAGTGTTTGGGGGGACTC 	10

Overlaps with: MNEST040081 MNEST047004
Overlaps with miRBase pre-miRNAs: ath-MIR395c
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
8	Arabidopsis thaliana	GSM366869	CTGAAGTGTTTGGGGGGACTC	GTTCCCTTAAACGCTTCATTG	down	1	0

Secondary structure

GACATAACATGTAAAGTCAAATGTCCCCTTGAGTTCCCTTAAACGCTTCATTGTTCATACTTTGTTATCATCTATCGATCGATCAATCAATCTGATGAACACTGAAGTGTTTGGGGGGACTCTAGGTGACATCTTGGCACCCACAGGCTAT
-----------------------------------------------------------------------------------------------------CTGAAGTGTTTGGGGGGACTC 	10

Overlaps with: MNEST040084 MNEST047007
Overlaps with miRBase pre-miRNAs: ath-MIR395f
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
9	Arabidopsis thaliana	GSM366869	CTGAAGTGTTTGGGGGGACTC	GTTCCCTTTAACGCTTCATTG	down	2	0

Secondary structure

AGAGAGTCAAATGTCCCCATGAGTTCCCTTTAACGCTTCATTGTTAAATACTCAAAGCCACATTGGTTTGTATACAACACTGAAGTGTTTGGGGGGACTCTTGGTGTCATTCTGGCGTA
-------------------------------------------------------------------------------CTGAAGTGTTTGGGGGGACTC 	10

Overlaps with: MNEST040080 MNEST047003
Overlaps with miRBase pre-miRNAs: ath-MIR395b
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
10	Arabidopsis thaliana	GSM424848-4990	CTGAAGTGTTTGGGGGGACTC	GTTCCCTTTAACGCTTCATTG	down	2	0

Secondary structure

AAGAAAGTCAAATGTCCACATGAGTTCCCTTTAACGCTTCATTGTTGAATACTCAAAGCCACATTGGTTTGTATATAACACTGAAGTGTTTGGGGGGACTCTTGGTGTCATTCTGGCGTTG
--------------------------------------------------------------------------------CTGAAGTGTTTGGGGGGACTC 	5

Overlaps with: MNEST040081 MNEST047004
Overlaps with miRBase pre-miRNAs: ath-MIR395c
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
11	Arabidopsis thaliana	GSM424848-4990	CTGAAGTGTTTGGGGGGACTC	GTTCCCTTAAACGCTTCATTG	down	1	0

Secondary structure

GACATAACATGTAAAGTCAAATGTCCCCTTGAGTTCCCTTAAACGCTTCATTGTTCATACTTTGTTATCATCTATCGATCGATCAATCAATCTGATGAACACTGAAGTGTTTGGGGGGACTCTAGGTGACATCTTGGCACCCACAGGCTAT
-----------------------------------------------------------------------------------------------------CTGAAGTGTTTGGGGGGACTC 	5

Overlaps with: MNEST040084 MNEST047007
Overlaps with miRBase pre-miRNAs: ath-MIR395f
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
12	Arabidopsis thaliana	GSM424848-4990	CTGAAGTGTTTGGGGGGACTC	GTTCCCTTTAACGCTTCATTG	down	2	0

Secondary structure

AGAGAGTCAAATGTCCCCATGAGTTCCCTTTAACGCTTCATTGTTAAATACTCAAAGCCACATTGGTTTGTATACAACACTGAAGTGTTTGGGGGGACTCTTGGTGTCATTCTGGCGTA
-------------------------------------------------------------------------------CTGAAGTGTTTGGGGGGACTC 	5

Overlaps with: MNEST040080 MNEST047003
Overlaps with miRBase pre-miRNAs: ath-MIR395b
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
13	Arabidopsis thaliana	GSM304283	CTGAAGTGTTTGGGGGGACTC	GTTCCCTTTAACGCTTCATTG	down	2	0

Secondary structure

AGAGAGTCAAATGTCCCCATGAGTTCCCTTTAACGCTTCATTGTTAAATACTCAAAGCCACATTGGTTTGTATACAACACTGAAGTGTTTGGGGGGACTCTTGGTGTCATTCTGGCGTA
----------------------------------------------------------------------------ACACTGAAGTGTTTGGGGGGA 	1
-------------------------------------------------------------------------------CTGAAGTGTTTGGGGGGACTC 	20

Overlaps with: MNEST040080 MNEST047003
Overlaps with miRBase pre-miRNAs: ath-MIR395b
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
14	Arabidopsis thaliana	GSM304283	CTGAAGTGTTTGGGGGGACTC	GTTCCCTTTAACGCTTCATTG	down	2	0

Secondary structure

AAGAAAGTCAAATGTCCACATGAGTTCCCTTTAACGCTTCATTGTTGAATACTCAAAGCCACATTGGTTTGTATATAACACTGAAGTGTTTGGGGGGACTCTTGGTGTCATTCTGGCGTTG
-----------------------------------------------------------------------------ACACTGAAGTGTTTGGGGGGA 	1
--------------------------------------------------------------------------------CTGAAGTGTTTGGGGGGACTC 	20

Overlaps with: MNEST040081 MNEST047004
Overlaps with miRBase pre-miRNAs: ath-MIR395c
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
15	Arabidopsis thaliana	GSM304283	CTGAAGTGTTTGGGGGGACTC	GTTCCCTTAAACGCTTCATTG	down	1	0

Secondary structure

GACATAACATGTAAAGTCAAATGTCCCCTTGAGTTCCCTTAAACGCTTCATTGTTCATACTTTGTTATCATCTATCGATCGATCAATCAATCTGATGAACACTGAAGTGTTTGGGGGGACTCTAGGTGACATCTTGGCACCCACAGGCTAT
--------------------------------------------------------------------------------------------------ACACTGAAGTGTTTGGGGGGA 	1
-----------------------------------------------------------------------------------------------------CTGAAGTGTTTGGGGGGACTC 	20

Overlaps with: MNEST040084 MNEST047007
Overlaps with miRBase pre-miRNAs: ath-MIR395f
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
16	Arabidopsis thaliana	GSM518432-13544	CTGAAGTGTTTGGGGGGACTC	GTTCCCTTTAACGCTTCATTG	down	2	0

Secondary structure

AGAGAGTCAAATGTCCCCATGAGTTCCCTTTAACGCTTCATTGTTAAATACTCAAAGCCACATTGGTTTGTATACAACACTGAAGTGTTTGGGGGGACTCTTGGTGTCATTCTGGCGTA
----------------------GTTCCCTTTAACGCTTCATT 	1
----------------------------------------------------------------------------ACACTGAAGTGTTTGGGGGGA 	1
-------------------------------------------------------------------------------CTGAAGTGTTTGGGGGGACTC 	47
--------------------------------------------------------------------------------TGAAGTGTTTGGGGGGACTC 	1

Overlaps with: MNEST040080 MNEST047003
Overlaps with miRBase pre-miRNAs: ath-MIR395b
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
17	Arabidopsis thaliana	GSM518432-13544	CTGAAGTGTTTGGGGGGACTC	GTTCCCTTTAACGCTTCATTG	down	2	0

Secondary structure

AAGAAAGTCAAATGTCCACATGAGTTCCCTTTAACGCTTCATTGTTGAATACTCAAAGCCACATTGGTTTGTATATAACACTGAAGTGTTTGGGGGGACTCTTGGTGTCATTCTGGCGTTG
-----------------------GTTCCCTTTAACGCTTCATT 	1
-----------------------------------------------------------------------------ACACTGAAGTGTTTGGGGGGA 	1
--------------------------------------------------------------------------------CTGAAGTGTTTGGGGGGACTC 	47
---------------------------------------------------------------------------------TGAAGTGTTTGGGGGGACTC 	1

Overlaps with: MNEST040081 MNEST047004
Overlaps with miRBase pre-miRNAs: ath-MIR395c
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
18	Arabidopsis thaliana	GSM518432-13544	CTGAAGTGTTTGGGGGGACTC	GTTCCCTTAAACGCTTCATTG	down	1	0

Secondary structure

GACATAACATGTAAAGTCAAATGTCCCCTTGAGTTCCCTTAAACGCTTCATTGTTCATACTTTGTTATCATCTATCGATCGATCAATCAATCTGATGAACACTGAAGTGTTTGGGGGGACTCTAGGTGACATCTTGGCACCCACAGGCTAT
--------------------------------------------------------------------------------------------------ACACTGAAGTGTTTGGGGGGA 	1
-----------------------------------------------------------------------------------------------------CTGAAGTGTTTGGGGGGACTC 	47
------------------------------------------------------------------------------------------------------TGAAGTGTTTGGGGGGACTC 	1
------------------------------------------------------------------------------------------------------------GTTTGGGGGGACTCTAGGTGA 	1

Overlaps with: MNEST040084 MNEST047007
Overlaps with miRBase pre-miRNAs: ath-MIR395f
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
19	Arabidopsis thaliana	GSM277608	CTGAAGTGTTTGGGGGGACTC	GTTCCCTTAAACGCTTCATTG	down	1	0

Secondary structure

GACATAACATGTAAAGTCAAATGTCCCCTTGAGTTCCCTTAAACGCTTCATTGTTCATACTTTGTTATCATCTATCGATCGATCAATCAATCTGATGAACACTGAAGTGTTTGGGGGGACTCTAGGTGACATCTTGGCACCCACAGGCTAT
-----------------------------------------------------------------------------------------------------CTGAAGTGTTTGGGGGGACTC 	8

Overlaps with: MNEST040084 MNEST047007
Overlaps with miRBase pre-miRNAs: ath-MIR395f
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
20	Arabidopsis thaliana	GSM277608	CTGAAGTGTTTGGGGGGACTC	GTTCCCTTTAACGCTTCATTG	down	2	0

Secondary structure

AGAGAGTCAAATGTCCCCATGAGTTCCCTTTAACGCTTCATTGTTAAATACTCAAAGCCACATTGGTTTGTATACAACACTGAAGTGTTTGGGGGGACTCTTGGTGTCATTCTGGCGTA
-------------------------------------------------------------------------------CTGAAGTGTTTGGGGGGACTC 	8

Overlaps with: MNEST040080 MNEST047003
Overlaps with miRBase pre-miRNAs: ath-MIR395b
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
21	Arabidopsis thaliana	GSM277608	CTGAAGTGTTTGGGGGGACTC	GTTCCCTTTAACGCTTCATTG	down	2	0

Secondary structure

AAGAAAGTCAAATGTCCACATGAGTTCCCTTTAACGCTTCATTGTTGAATACTCAAAGCCACATTGGTTTGTATATAACACTGAAGTGTTTGGGGGGACTCTTGGTGTCATTCTGGCGTTG
--------------------------------------------------------------------------------CTGAAGTGTTTGGGGGGACTC 	8

Overlaps with: MNEST040081 MNEST047004
Overlaps with miRBase pre-miRNAs: ath-MIR395c
HuntMi prediction: true miRNA