miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: CTGACCTATGAATTGACAGCC

selected species: Mus musculus



10 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Mus musculus GSM539868 CTGACCTATGAATTGACAGCCA GCTGCCAATTCCATAGGTCACAG up 2 1


Secondary structure

GTGGGTTGTCAGCAGGCTGCCAAGATGGCGTGCACAGGGCTCTGACCTATGAATTGACAGCCAGTACTCTTTTCTCTCCTCTGGCTGCCAATTCCATAGGTCACAGGTATGTTCACCTCAATGCCAGCCATAACGACTCGAAGG
-----------------------------------------CTGACCTATGAATTGACAGCCAGTA 	1
-----------------------------------------CTGACCTATGAATTGACAGCCAGT 	17
-----------------------------------------CTGACCTATGAATTGACAGCCAG 	16
-----------------------------------------CTGACCTATGAATTGACAGCCA 	797
-----------------------------------------CTGACCTATGAATTGACAGCC 	487
-----------------------------------------CTGACCTATGAATTGACAGC 	74
-----------------------------------------CTGACCTATGAATTGACAG 	4
------------------------------------------TGACCTATGAATTGACAGCCAGT 	36
------------------------------------------TGACCTATGAATTGACAGCCAG 	32
------------------------------------------TGACCTATGAATTGACAGCCA 	30
------------------------------------------TGACCTATGAATTGACAGCC 	5
-------------------------------------------GACCTATGAATTGACAGCCAGT 	1


Overlaps with: MNEST031909
Overlaps with miRBase pre-miRNAs: mmu-mir-192
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Mus musculus GSM539835 CTGACCTATGAATTGACAGCCA GCTGCCAATTCCATAGGTCACAG up 2 1


Secondary structure

GTGGGTTGTCAGCAGGCTGCCAAGATGGCGTGCACAGGGCTCTGACCTATGAATTGACAGCCAGTACTCTTTTCTCTCCTCTGGCTGCCAATTCCATAGGTCACAGGTATGTTCACCTCAATGCCAGCCATAACGACTCGAAGG
-----------------------------------------CTGACCTATGAATTGACAGCCA 	1899
-----------------------------------------CTGACCTATGAATTGACAGCC 	1269
-----------------------------------------CTGACCTATGAATTGACAGC 	88
-----------------------------------------CTGACCTATGAATTGACAG 	19
-----------------------------------------CTGACCTATGAATTGACAGCCAGT 	30
-----------------------------------------CTGACCTATGAATTGACAGCCAG 	20
-----------------------------------------CTGACCTATGAATTGACAGCCAGTA 	4
------------------------------------------TGACCTATGAATTGACAGCCAGTA 	30
------------------------------------------TGACCTATGAATTGACAGCCAG 	173
------------------------------------------TGACCTATGAATTGACAGCCA 	197
------------------------------------------TGACCTATGAATTGACAGC 	6
------------------------------------------TGACCTATGAATTGACAGCCAGT 	263
------------------------------------------TGACCTATGAATTGACAGCC 	23
------------------------------------------TGACCTATGAATTGACAGCCAGTACT 	1
------------------------------------------TGACCTATGAATTGACAGCCAGTAC 	2
------------------------------------------------------------------------------------CTGCCAATTCCATAGGTCACA 	1


Overlaps with: MNEST031909
Overlaps with miRBase pre-miRNAs: mmu-mir-192
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Mus musculus GSM539869 CTGACCTATGAATTGACAGCCA GCTGCCAATTCCATAGGTCACAG up 2 1


Secondary structure

GTGGGTTGTCAGCAGGCTGCCAAGATGGCGTGCACAGGGCTCTGACCTATGAATTGACAGCCAGTACTCTTTTCTCTCCTCTGGCTGCCAATTCCATAGGTCACAGGTATGTTCACCTCAATGCCAGCCATAACGACTCGAAGG
-----------------------------------------CTGACCTATGAATTGACAGCCAGT 	58
-----------------------------------------CTGACCTATGAATTGACAGCCA 	2988
-----------------------------------------CTGACCTATGAATTGACAGCC 	2680
-----------------------------------------CTGACCTATGAATTGACAGC 	292
-----------------------------------------CTGACCTATGAATTGACAG 	16
-----------------------------------------CTGACCTATGAATTGACAGCCAGTA 	4
-----------------------------------------CTGACCTATGAATTGACAGCCAG 	54
------------------------------------------TGACCTATGAATTGACAGCCAGTA 	6
------------------------------------------TGACCTATGAATTGACAGCCAGT 	114
------------------------------------------TGACCTATGAATTGACAGCCAG 	162
------------------------------------------TGACCTATGAATTGACAGCCA 	152
------------------------------------------TGACCTATGAATTGACAGCC 	19
------------------------------------------TGACCTATGAATTGACAGC 	1


Overlaps with: MNEST031909
Overlaps with miRBase pre-miRNAs: mmu-mir-192
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Mus musculus GSM539870 CTGACCTATGAATTGACAGCCA GCTGCCAATTCCATAGGTCACAG up 2 1


Secondary structure

GTGGGTTGTCAGCAGGCTGCCAAGATGGCGTGCACAGGGCTCTGACCTATGAATTGACAGCCAGTACTCTTTTCTCTCCTCTGGCTGCCAATTCCATAGGTCACAGGTATGTTCACCTCAATGCCAGCCATAACGACTCGAAGG
-----------------------------------------CTGACCTATGAATTGACAGCCAGTA 	1
-----------------------------------------CTGACCTATGAATTGACAGCCAGT 	95
-----------------------------------------CTGACCTATGAATTGACAGCCAG 	66
-----------------------------------------CTGACCTATGAATTGACAGCCA 	3127
-----------------------------------------CTGACCTATGAATTGACAGCC 	1840
-----------------------------------------CTGACCTATGAATTGACAGC 	197
-----------------------------------------CTGACCTATGAATTGACAG 	22
------------------------------------------TGACCTATGAATTGACAGCCAGTA 	10
------------------------------------------TGACCTATGAATTGACAGCCAGT 	149
------------------------------------------TGACCTATGAATTGACAGCCAG 	126
------------------------------------------TGACCTATGAATTGACAGCCA 	85
------------------------------------------TGACCTATGAATTGACAGCC 	10
------------------------------------------TGACCTATGAATTGACAGC 	2
-------------------------------------------GACCTATGAATTGACAGCCAG 	1


Overlaps with: MNEST031909
Overlaps with miRBase pre-miRNAs: mmu-mir-192
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Mus musculus GSM539864 CTGACCTATGAATTGACAGCC CTGCCAATTCCATAGGTCACAG up 2 1


Secondary structure

GTGGGTTGTCAGCAGGCTGCCAAGATGGCGTGCACAGGGCTCTGACCTATGAATTGACAGCCAGTACTCTTTTCTCTCCTCTGGCTGCCAATTCCATAGGTCACAGGTATGTTCACCTCAATGCCAGCCATAACGACTCGAAGG
----------------------AGATGGCGTGCACAGGGCT 	1
----------------------------------------TCTGACCTATGAATTGACAGCCA 	1
-----------------------------------------CTGACCTATGAATTGACAGCCA 	8873
-----------------------------------------CTGACCTATGAATTGACAGCC 	10779
-----------------------------------------CTGACCTATGAATTGACAGC 	1920
-----------------------------------------CTGACCTATGAATTGACAG 	109
-----------------------------------------CTGACCTATGAATTGACAGCCAGT 	175
-----------------------------------------CTGACCTATGAATTGACAGCCAG 	138
-----------------------------------------CTGACCTATGAATTGACAGCCAGTA 	3
------------------------------------------TGACCTATGAATTGACAGCCAGTA 	13
------------------------------------------TGACCTATGAATTGACAGCCAG 	474
------------------------------------------TGACCTATGAATTGACAGCCA 	673
------------------------------------------TGACCTATGAATTGACAGCC 	154
------------------------------------------TGACCTATGAATTGACAGC 	61
------------------------------------------TGACCTATGAATTGACAGCCAGT 	641
-------------------------------------------GACCTATGAATTGACAGCCAGT 	3
-------------------------------------------GACCTATGAATTGACAGCCAG 	2
-------------------------------------------GACCTATGAATTGACAGCCA 	1
-------------------------------------------GACCTATGAATTGACAGCC 	1
--------------------------------------------ACCTATGAATTGACAGCCAGT 	1
--------------------------------------------ACCTATGAATTGACAGCCA 	2
------------------------------------------------------------------------------------CTGCCAATTCCATAGGTCACAG 	1


Overlaps with: MNEST031909
Overlaps with miRBase pre-miRNAs: mmu-mir-192
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Mus musculus GSM539861 CTGACCTATGAATTGACAGCC CTGCCAATTCCATAGGTCACAG up 2 1


Secondary structure

GTGGGTTGTCAGCAGGCTGCCAAGATGGCGTGCACAGGGCTCTGACCTATGAATTGACAGCCAGTACTCTTTTCTCTCCTCTGGCTGCCAATTCCATAGGTCACAGGTATGTTCACCTCAATGCCAGCCATAACGACTCGAAGG
----------------------------------------TCTGACCTATGAATTGACAGCC 	1
-----------------------------------------CTGACCTATGAATTGACAGCCA 	1887
-----------------------------------------CTGACCTATGAATTGACAGCC 	2667
-----------------------------------------CTGACCTATGAATTGACAGC 	485
-----------------------------------------CTGACCTATGAATTGACAG 	45
-----------------------------------------CTGACCTATGAATTGACAGCCAGTA 	3
-----------------------------------------CTGACCTATGAATTGACAGCCAGT 	27
-----------------------------------------CTGACCTATGAATTGACAGCCAG 	46
------------------------------------------TGACCTATGAATTGACAGCCAGTA 	4
------------------------------------------TGACCTATGAATTGACAGCCAGT 	83
------------------------------------------TGACCTATGAATTGACAGCCAG 	174
------------------------------------------TGACCTATGAATTGACAGCCA 	274
------------------------------------------TGACCTATGAATTGACAGCC 	89
------------------------------------------TGACCTATGAATTGACAGC 	30
-------------------------------------------GACCTATGAATTGACAGCCAG 	2
-------------------------------------------GACCTATGAATTGACAGCCA 	1


Overlaps with: MNEST031909
Overlaps with miRBase pre-miRNAs: mmu-mir-192
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
7 Mus musculus GSM539847 CTGACCTATGAATTGACAGCC CTGCCAATTCCATAGGTCACAG up 2 1


Secondary structure

GTGGGTTGTCAGCAGGCTGCCAAGATGGCGTGCACAGGGCTCTGACCTATGAATTGACAGCCAGTACTCTTTTCTCTCCTCTGGCTGCCAATTCCATAGGTCACAGGTATGTTCACCTCAATGCCAGCCATAACGACTCGAAGG
---------------------------------------CTCTGACCTATGAATTGACAGCC 	1
----------------------------------------TCTGACCTATGAATTGACAGCCA 	1
-----------------------------------------CTGACCTATGAATTGACAGCCAGT 	52
-----------------------------------------CTGACCTATGAATTGACAGCCAG 	49
-----------------------------------------CTGACCTATGAATTGACAGCCA 	1001
-----------------------------------------CTGACCTATGAATTGACAGCC 	2293
-----------------------------------------CTGACCTATGAATTGACAGC 	511
-----------------------------------------CTGACCTATGAATTGACAG 	40
-----------------------------------------CTGACCTATGAATTGACAGCCAGTA 	7
------------------------------------------TGACCTATGAATTGACAGCCAGTA 	14
------------------------------------------TGACCTATGAATTGACAGCCAGT 	103
------------------------------------------TGACCTATGAATTGACAGCCAG 	206
------------------------------------------TGACCTATGAATTGACAGCCA 	274
------------------------------------------TGACCTATGAATTGACAGCC 	223
------------------------------------------TGACCTATGAATTGACAGC 	41
-------------------------------------------GACCTATGAATTGACAGCCAG 	1
-------------------------------------------GACCTATGAATTGACAGCCA 	4


Overlaps with: MNEST031909
Overlaps with miRBase pre-miRNAs: mmu-mir-192
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
8 Mus musculus GSM539853 CTGACCTATGAATTGACAGCCA GCTGCCAATTCCATAGGTCACAG up 2 1


Secondary structure

GTGGGTTGTCAGCAGGCTGCCAAGATGGCGTGCACAGGGCTCTGACCTATGAATTGACAGCCAGTACTCTTTTCTCTCCTCTGGCTGCCAATTCCATAGGTCACAGGTATGTTCACCTCAATGCCAGCCATAACGACTCGAAGG
--------------------CAAGATGGCGTGCACAGGGCT 	1
-----------------------------------------CTGACCTATGAATTGACAGCCAGT 	117
-----------------------------------------CTGACCTATGAATTGACAGCCAG 	138
-----------------------------------------CTGACCTATGAATTGACAGCCA 	4964
-----------------------------------------CTGACCTATGAATTGACAGCC 	3573
-----------------------------------------CTGACCTATGAATTGACAGC 	472
-----------------------------------------CTGACCTATGAATTGACAG 	37
-----------------------------------------CTGACCTATGAATTGACAGCCAGTA 	13
------------------------------------------TGACCTATGAATTGACAGCCAGTA 	15
------------------------------------------TGACCTATGAATTGACAGCCAGT 	101
------------------------------------------TGACCTATGAATTGACAGCCAG 	202
------------------------------------------TGACCTATGAATTGACAGCCA 	170
------------------------------------------TGACCTATGAATTGACAGCC 	31
------------------------------------------TGACCTATGAATTGACAGC 	2
-------------------------------------------GACCTATGAATTGACAGCCAGT 	1
-------------------------------------------GACCTATGAATTGACAGCC 	1


Overlaps with: MNEST031909
Overlaps with miRBase pre-miRNAs: mmu-mir-192
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
9 Mus musculus GSM539871 CTGACCTATGAATTGACAGCCA GCTGCCAATTCCATAGGTCACAG up 2 1


Secondary structure

GTGGGTTGTCAGCAGGCTGCCAAGATGGCGTGCACAGGGCTCTGACCTATGAATTGACAGCCAGTACTCTTTTCTCTCCTCTGGCTGCCAATTCCATAGGTCACAGGTATGTTCACCTCAATGCCAGCCATAACGACTCGAAGG
--------------------------------------GCTCTGACCTATGAATTGACAGC 	1
---------------------------------------CTCTGACCTATGAATTGACAGCC 	1
----------------------------------------TCTGACCTATGAATTGACAGCCAGT 	3
----------------------------------------TCTGACCTATGAATTGACAGCCAG 	4
----------------------------------------TCTGACCTATGAATTGACAGCCA 	6
----------------------------------------TCTGACCTATGAATTGACAGCC 	2
----------------------------------------TCTGACCTATGAATTGACAGC 	1
----------------------------------------TCTGACCTATGAATTGACA 	2
-----------------------------------------CTGACCTATGAATTGACAGCCAGTAC 	4
-----------------------------------------CTGACCTATGAATTGACAGCCAGTA 	891
-----------------------------------------CTGACCTATGAATTGACAGCCAGT 	10597
-----------------------------------------CTGACCTATGAATTGACAGCCAG 	4711
-----------------------------------------CTGACCTATGAATTGACAGCCA 	224023
-----------------------------------------CTGACCTATGAATTGACAGCC 	50307
-----------------------------------------CTGACCTATGAATTGACAGC 	5049
-----------------------------------------CTGACCTATGAATTGACAG 	2308
------------------------------------------TGACCTATGAATTGACAGCCAGTACT 	1
------------------------------------------TGACCTATGAATTGACAGCCAGTAC 	19
------------------------------------------TGACCTATGAATTGACAGCCAGTA 	2605
------------------------------------------TGACCTATGAATTGACAGCCAGT 	22552
------------------------------------------TGACCTATGAATTGACAGCCAG 	10898
------------------------------------------TGACCTATGAATTGACAGCCA 	8634
------------------------------------------TGACCTATGAATTGACAGCC 	1171
------------------------------------------TGACCTATGAATTGACAGC 	327
-------------------------------------------GACCTATGAATTGACAGCCAGTAC 	1
-------------------------------------------GACCTATGAATTGACAGCCAGTA 	12
-------------------------------------------GACCTATGAATTGACAGCCAGT 	66
-------------------------------------------GACCTATGAATTGACAGCCAG 	28
-------------------------------------------GACCTATGAATTGACAGCCA 	22
-------------------------------------------GACCTATGAATTGACAGCC 	3
--------------------------------------------ACCTATGAATTGACAGCCAGTA 	3
--------------------------------------------ACCTATGAATTGACAGCCAGT 	3
--------------------------------------------ACCTATGAATTGACAGCCA 	2
-----------------------------------------------------------------------------------GCTGCCAATTCCATAGGTCACAG 	1
------------------------------------------------------------------------------------CTGCCAATTCCATAGGTCACAG 	1


Overlaps with: MNEST031909
Overlaps with miRBase pre-miRNAs: mmu-mir-192
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
10 Mus musculus GSM539854 CTGACCTATGAATTGACAGCCA GCTGCCAATTCCATAGGTCACAG up 2 1


Secondary structure

GTGGGTTGTCAGCAGGCTGCCAAGATGGCGTGCACAGGGCTCTGACCTATGAATTGACAGCCAGTACTCTTTTCTCTCCTCTGGCTGCCAATTCCATAGGTCACAGGTATGTTCACCTCAATGCCAGCCATAACGACTCGAAGG
-----------------------------------------CTGACCTATGAATTGACAGCCAGT 	24
-----------------------------------------CTGACCTATGAATTGACAGCCAG 	29
-----------------------------------------CTGACCTATGAATTGACAGCCA 	1474
-----------------------------------------CTGACCTATGAATTGACAGCC 	1249
-----------------------------------------CTGACCTATGAATTGACAGC 	201
-----------------------------------------CTGACCTATGAATTGACAG 	14
------------------------------------------TGACCTATGAATTGACAGCCAGTA 	4
------------------------------------------TGACCTATGAATTGACAGCCAGT 	51
------------------------------------------TGACCTATGAATTGACAGCCAG 	55
------------------------------------------TGACCTATGAATTGACAGCCA 	92
------------------------------------------TGACCTATGAATTGACAGCC 	19
------------------------------------------TGACCTATGAATTGACAGC 	4
--------------------------------------------------------------AGTACTCTTTTCTCTCCTCT 	1


Overlaps with: MNEST031909
Overlaps with miRBase pre-miRNAs: mmu-mir-192
HuntMi prediction: true miRNA