miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: CTGGGCTCAGATTCGCTTAGGC

selected species: Caenorhabditis elegans



1 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Caenorhabditis elegans GSM427344-5691 CTGGGCTCAGATTCGCTTAGGC CTAAGTGAATGCTTTGCCACAGTC down 3 2


Secondary structure

AAGAGACACGTGTCCACGCCGTCTAAGTGAATGCTTTGCCACAGTCTTCGATGTTCTGAAATGAAGCCTGGGCTCAGATTCGCTTAGGCCGGAGTTTGACACGGCATT
-----------------------TAAGTGAATGCTTTGCCACAGTCT 	8
-----------------------TAAGTGAATGCTTTGCCACAGTC 	71
-----------------------TAAGTGAATGCTTTGCCACAGT 	4
-----------------------TAAGTGAATGCTTTGCCACAG 	3
-----------------------TAAGTGAATGCTTTGCCACA 	1
-----------------------TAAGTGAATGCTTTGCCACAGTCTT 	1
------------------------AAGTGAATGCTTTGCCACAGTCT 	1
----------------------------------------------TTCGATGTTCTGAAATGAAGC 	1
-------------------------------------------------------------------CTGGGCTCAGATTCGCTTAGGC 	156
-------------------------------------------------------------------CTGGGCTCAGATTCGCTTAG 	1
--------------------------------------------------------------------TGGGCTCAGATTCGCTTAGGC 	6
--------------------------------------------------------------------TGGGCTCAGATTCGCTTAGG 	1

Overlaps with: MNEST038325 MNEST038326
Overlaps with miRBase pre-miRNAs: cel-mir-86
HuntMi prediction: true miRNA