miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

Please select library, species and/or miRNA sequence.

selected mature miRNA sequence: CTTCCATATCTGGGGAGCTTC

selected species: Glycine max

8 records found

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
1	Glycine max	GSM543396	CTTCCATATCTGGGGAGCTTC	AGCTGCTTAGCTATGGATCCC	down	5	0

Secondary structure

TATTATTATTAGGTCAAAGGGAATCACAAAACAAAGGGGGTTATGGAGTGGAGCTCCTTGAAGTCCAATTGAGGATCTTACTGGGTGGATTGAGCTGCTTAGCTATGGATCCCACAGTTCTACCCATCATTAAGTGCTTTTGTGGTAGTCTTGTGGCTTCCATATCTGGGGAGCTTCATTTGCCTTTATAGTATTATCCTTCTTTGGATTGAAGGGAGCTCTACACCCTTCTCCCCTTTTGTCACATAATTTAGATTTGATGATTG
--------------------------------------------------GAGCTCCTTGAAGTCCAATT 	19
--------------------------------------------------GAGCTCCTTGAAGTCCAATTG 	11
------------------------------------------------------------------------------------------------------------------------------------------------------------CTTCCATATCTGGGGAGCTTC 	656
------------------------------------------------------------------------------------------------------------------------------------------------------------CTTCCATATCTGGGGAGCT 	24
-------------------------------------------------------------------------------------------------------------------------------------------------------------TTCCATATCTGGGGAGCTTC 	70
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGGATTGAAGGGAGCTCTA 	111

Overlaps with miRBase pre-miRNAs: gma-MIR159e
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
2	Glycine max	GSM543396	CTTCCATATCTGGGGAGCTTC	AGCTGCTTAGCTATGGATCCC	down	5	0

Secondary structure

GAGGATCTTACTGGGTGAATTGAGCTGCTTAGCTATGGATCCCACAGTTCTACCCATCAATAAGTGCTTTTGTGGTAGTCTTGTGGCTTCCATATCTGGGGAGCTTCATTTGCCTTTATAGTATTA
--------------------------------------------------------------------------------------CTTCCATATCTGGGGAGCTTC 	656
--------------------------------------------------------------------------------------CTTCCATATCTGGGGAGCT 	24
---------------------------------------------------------------------------------------TTCCATATCTGGGGAGCTTC 	70

Overlaps with: MNEST045281 MNEST045771
Overlaps with miRBase pre-miRNAs: gma-MIR159d
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
3	Glycine max	GSM543394	CTTCCATATCTGGGGAGCTTC	AGCTGCTTAGCTATGGATCCC	down	5	0

Secondary structure

TATTATTATTAGGTCAAAGGGAATCACAAAACAAAGGGGGTTATGGAGTGGAGCTCCTTGAAGTCCAATTGAGGATCTTACTGGGTGGATTGAGCTGCTTAGCTATGGATCCCACAGTTCTACCCATCATTAAGTGCTTTTGTGGTAGTCTTGTGGCTTCCATATCTGGGGAGCTTCATTTGCCTTTATAGTATTATCCTTCTTTGGATTGAAGGGAGCTCTACACCCTTCTCCCCTTTTGTCACATAATTTAGATTTGATGATTG
--------------------------------------------------GAGCTCCTTGAAGTCCAATT 	7
--------------------------------------------------GAGCTCCTTGAAGTCCAATTG 	5
-----------------------------------------------------------------------AGGATCTTACTGGGTGGATTG 	9
--------------------------------------------------------------------------------------------AGCTGCTTAGCTATGGATCCC 	19
------------------------------------------------------------------------------------------------------------------------------------------------------------CTTCCATATCTGGGGAGCTTC 	272
------------------------------------------------------------------------------------------------------------------------------------------------------------CTTCCATATCTGGGGAGCT 	6
-------------------------------------------------------------------------------------------------------------------------------------------------------------TTCCATATCTGGGGAGCTTC 	17
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGGATTGAAGGGAGCTCTA 	215
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGGATTGAAGGGAGCTC 	7
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGATTGAAGGGAGCTCTA 	8

Overlaps with miRBase pre-miRNAs: gma-MIR159e
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
4	Glycine max	GSM543394	CTTCCATATCTGGGGAGCTTC	AGCTGCTTAGCTATGGATCCC	down	5	0

Secondary structure

GAGGATCTTACTGGGTGAATTGAGCTGCTTAGCTATGGATCCCACAGTTCTACCCATCAATAAGTGCTTTTGTGGTAGTCTTGTGGCTTCCATATCTGGGGAGCTTCATTTGCCTTTATAGTATTA
----------------------AGCTGCTTAGCTATGGATCCC 	19
--------------------------------------------------------------------------------------CTTCCATATCTGGGGAGCTTC 	272
--------------------------------------------------------------------------------------CTTCCATATCTGGGGAGCT 	6
---------------------------------------------------------------------------------------TTCCATATCTGGGGAGCTTC 	17

Overlaps with: MNEST045281 MNEST045771
Overlaps with miRBase pre-miRNAs: gma-MIR159d
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
5	Glycine max	GSM543393	CTTCCATATCTGGGGAGCTTC	AGCTGCTTAGCTATGGATCCC	down	5	0

Secondary structure

TATTATTATTAGGTCAAAGGGAATCACAAAACAAAGGGGGTTATGGAGTGGAGCTCCTTGAAGTCCAATTGAGGATCTTACTGGGTGGATTGAGCTGCTTAGCTATGGATCCCACAGTTCTACCCATCATTAAGTGCTTTTGTGGTAGTCTTGTGGCTTCCATATCTGGGGAGCTTCATTTGCCTTTATAGTATTATCCTTCTTTGGATTGAAGGGAGCTCTACACCCTTCTCCCCTTTTGTCACATAATTTAGATTTGATGATTG
--------------------------------------------------GAGCTCCTTGAAGTCCAATT 	11
--------------------------------------------------GAGCTCCTTGAAGTCCAATTG 	6
-----------------------------------------------------------------------AGGATCTTACTGGGTGGATTG 	14
--------------------------------------------------------------------------------------------AGCTGCTTAGCTATGGATCCC 	18
------------------------------------------------------------------------------------------------------------------------------------------------------------CTTCCATATCTGGGGAGCTTC 	273
-------------------------------------------------------------------------------------------------------------------------------------------------------------TTCCATATCTGGGGAGCTTC 	21
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGGATTGAAGGGAGCTCTA 	143
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGGATTGAAGGGAGCTCT 	5

Overlaps with miRBase pre-miRNAs: gma-MIR159e
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
6	Glycine max	GSM543393	CTTCCATATCTGGGGAGCTTC	AGCTGCTTAGCTATGGATCCC	down	5	0

Secondary structure

GAGGATCTTACTGGGTGAATTGAGCTGCTTAGCTATGGATCCCACAGTTCTACCCATCAATAAGTGCTTTTGTGGTAGTCTTGTGGCTTCCATATCTGGGGAGCTTCATTTGCCTTTATAGTATTA
----------------------AGCTGCTTAGCTATGGATCCC 	18
--------------------------------------------------------------------------------------CTTCCATATCTGGGGAGCTTC 	273
---------------------------------------------------------------------------------------TTCCATATCTGGGGAGCTTC 	21

Overlaps with: MNEST045281 MNEST045771
Overlaps with miRBase pre-miRNAs: gma-MIR159d
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
7	Glycine max	GSM543395	CTTCCATATCTGGGGAGCTTC	AGCTGCTTAGCTATGGATCCC	down	5	0

Secondary structure

TATTATTATTAGGTCAAAGGGAATCACAAAACAAAGGGGGTTATGGAGTGGAGCTCCTTGAAGTCCAATTGAGGATCTTACTGGGTGGATTGAGCTGCTTAGCTATGGATCCCACAGTTCTACCCATCATTAAGTGCTTTTGTGGTAGTCTTGTGGCTTCCATATCTGGGGAGCTTCATTTGCCTTTATAGTATTATCCTTCTTTGGATTGAAGGGAGCTCTACACCCTTCTCCCCTTTTGTCACATAATTTAGATTTGATGATTG
--------------------------------------------------GAGCTCCTTGAAGTCCAATTG 	5
-----------------------------------------------------------------------AGGATCTTACTGGGTGGATTG 	32
--------------------------------------------------------------------------------------------AGCTGCTTAGCTATGGATCCC 	24
------------------------------------------------------------------------------------------------------------------------------------------------------------CTTCCATATCTGGGGAGCTTC 	323
------------------------------------------------------------------------------------------------------------------------------------------------------------CTTCCATATCTGGGGAGCT 	12
-------------------------------------------------------------------------------------------------------------------------------------------------------------TTCCATATCTGGGGAGCTTC 	220
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGGATTGAAGGGAGCTCTA 	239
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGGATTGAAGGGAGCTCT 	8
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGGATTGAAGGGAGCTC 	5

Overlaps with miRBase pre-miRNAs: gma-MIR159e
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
8	Glycine max	GSM543395	CTTCCATATCTGGGGAGCTTC	AGCTGCTTAGCTATGGATCCC	down	5	0

Secondary structure

GAGGATCTTACTGGGTGAATTGAGCTGCTTAGCTATGGATCCCACAGTTCTACCCATCAATAAGTGCTTTTGTGGTAGTCTTGTGGCTTCCATATCTGGGGAGCTTCATTTGCCTTTATAGTATTA
-AGGATCTTACTGGGTGAATTG 	6
----------------------AGCTGCTTAGCTATGGATCCC 	24
--------------------------------------------------------------------------------------CTTCCATATCTGGGGAGCTTC 	323
--------------------------------------------------------------------------------------CTTCCATATCTGGGGAGCT 	12
---------------------------------------------------------------------------------------TTCCATATCTGGGGAGCTTC 	220

Overlaps with: MNEST045281 MNEST045771
Overlaps with miRBase pre-miRNAs: gma-MIR159d
HuntMi prediction: true miRNA