miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: CTTCCTGCCTCTCACTAGCTT

selected species: Physcomitrella patens



20 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Physcomitrella patens GSM115097 CTTCCTGCCTCTCACTAGCTT GCTATTGGTGGTCAGGAATAG up 3 2


Secondary structure

GGGTGAAGTGTGGACGATGGAGAGTCAGCCTCTTCCTGCCTCTCACTAGCTTCATCCCTTCCTCCCTAAATTTTAGTCTGGGAGGGAAGGAGCTATTGGTGGTCAGGAATAGCGCACCCTTCATTTATCCACACTTCAAC
----------------------------CCTCTTCCTGCCTCTCACTAG 	2
-------------------------------CTTCCTGCCTCTCACTAGCTT 	71
-------------------------------CTTCCTGCCTCTCACTAGCT 	2
-------------------------------CTTCCTGCCTCTCACTAGC 	1
--------------------------------TTCCTGCCTCTCACTAGCTTC 	1
-------------------------------------------------------------------------------------------GCTATTGGTGGTCAGGAATAG 	5
-------------------------------------------------------------------------------------------GCTATTGGTGGTCAGGAATA 	1
----------------------------------------------------------------------------------------------------------------CGCACCCTTCATTTATCCACACT 	6


Overlaps with: MNEST039693 MNEST051517
Overlaps with miRBase pre-miRNAs: ppt-MIR1219a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Physcomitrella patens GSM115097 CTTCCTGCCTCTCACTAGCTT ACTATTGGGAAGCAGGAACAG up 4 0


Secondary structure

TCCTGCTGCCTCTTCCTGCCTCTCACTAGCTTCATCCCTTCGAACCCGAAGGTACTAAGGTAAGGAACTATTGGGAAGCAGGAACAGACTGCATC
--------CCTCTTCCTGCCTCTCACTAG 	2
-----------CTTCCTGCCTCTCACTAGCTT 	71
-----------CTTCCTGCCTCTCACTAGCT 	2
-----------CTTCCTGCCTCTCACTAGC 	1
------------TTCCTGCCTCTCACTAGCTTC 	1
------------------------------------------------------------------ACTATTGGGAAGCAGGAACA 	2
------------------------------------------------------------------ACTATTGGGAAGCAGGAACAG 	1
-------------------------------------------------------------------CTATTGGGAAGCAGGAACA 	1


Overlaps with: MNEST039694 MNEST051518
Overlaps with miRBase pre-miRNAs: ppt-MIR1219b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Physcomitrella patens GSM115097 CTTCCTGCCTCTCACTAGCTT GCTATTGGGGGTCAGGAACAG up 3 0


Secondary structure

TTGTTTTGTTAGGGTATGCGATTGATTAGGGTGAAAGAAACGAAGTGGAAGTGTGCTAGAAAAGTGAACCTCTTCCTGCCTCTCACTAGCTTCATCCCTCTCAGCTTGAGCTGCAGCCTGGGAGGGAAGGAGCTATTGGGGGTCAGGAACAGCAGACCCTTACTTTCTATTACATTCCCACCGTCCTCTGATAATTCCCTTTTCCATTGCAAGCTGCTGA
--------------------------------------------------------------------CCTCTTCCTGCCTCTCACTAG 	2
-----------------------------------------------------------------------CTTCCTGCCTCTCACTAGCTT 	71
-----------------------------------------------------------------------CTTCCTGCCTCTCACTAGCT 	2
-----------------------------------------------------------------------CTTCCTGCCTCTCACTAGC 	1
------------------------------------------------------------------------TTCCTGCCTCTCACTAGCTTC 	1
----------------------------------------------------------------------------------------------------------------GCAGCCTGGGAGGGAAGGAGC 	1
-----------------------------------------------------------------------------------------------------------------------------------GCTATTGGGGGTCAGGAACAG 	5
-----------------------------------------------------------------------------------------------------------------------------------GCTATTGGGGGTCAGGAACA 	10



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Physcomitrella patens GSM115097 CTTCCTGCCTCTCACTAGCTT GCTACTGAAGAGCAGGAATAG up 2 2


Secondary structure

AGGGTAACATCTCTGCGGCCTCTTCCTGCCTCTCACTAGCTTCATCCCTCAGAAGCTGAATCTTCTCAGGGAAGGAGCTACTGAAGAGCAGGAATAGATTGCACTCTTGGACTCC
------------------CCTCTTCCTGCCTCTCACTAG 	2
---------------------CTTCCTGCCTCTCACTAGCTT 	71
---------------------CTTCCTGCCTCTCACTAGCT 	2
---------------------CTTCCTGCCTCTCACTAGC 	1
----------------------TTCCTGCCTCTCACTAGCTTC 	1
----------------------------------------------------------------------------GCTACTGAAGAGCAGGAATA 	1
----------------------------------------------------------------------------GCTACTGAAGAGCAGGAATAG 	8



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Physcomitrella patens GSM313212 CTTCCTGCCTCTCACTAGCTT ACTATTGGGAAGCAGGAACAG up 4 0


Secondary structure

TCCTGCTGCCTCTTCCTGCCTCTCACTAGCTTCATCCCTTCGAACCCGAAGGTACTAAGGTAAGGAACTATTGGGAAGCAGGAACAGACTGCATC
----------TCTTCCTGCCTCTCACTAGCT 	1
-----------CTTCCTGCCTCTCACTAGCTTC 	1
-----------CTTCCTGCCTCTCACTAGCTT 	47
-----------CTTCCTGCCTCTCACTAGCT 	3
------------TTCCTGCCTCTCACTAGCTT 	2
--------------------------------CATCCCTTCGAACCCGAAGGTACT 	1
------------------------------------------------------------------ACTATTGGGAAGCAGGAACAG 	4
------------------------------------------------------------------ACTATTGGGAAGCAGGAACA 	2


Overlaps with: MNEST039694 MNEST051518
Overlaps with miRBase pre-miRNAs: ppt-MIR1219b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Physcomitrella patens GSM313212 CTTCCTGCCTCTCACTAGCTT GCTATTGGGGGTCAGGAACAG up 3 0


Secondary structure

TTGTTTTGTTAGGGTATGCGATTGATTAGGGTGAAAGAAACGAAGTGGAAGTGTGCTAGAAAAGTGAACCTCTTCCTGCCTCTCACTAGCTTCATCCCTCTCAGCTTGAGCTGCAGCCTGGGAGGGAAGGAGCTATTGGGGGTCAGGAACAGCAGACCCTTACTTTCTATTACATTCCCACCGTCCTCTGATAATTCCCTTTTCCATTGCAAGCTGCTGA
----------------------------------------------------------------------TCTTCCTGCCTCTCACTAGCT 	1
-----------------------------------------------------------------------CTTCCTGCCTCTCACTAGCTTC 	1
-----------------------------------------------------------------------CTTCCTGCCTCTCACTAGCTT 	47
-----------------------------------------------------------------------CTTCCTGCCTCTCACTAGCT 	3
------------------------------------------------------------------------TTCCTGCCTCTCACTAGCTT 	2
-----------------------------------------------------------------------------------------------------------------------------------GCTATTGGGGGTCAGGAACA 	5
-----------------------------------------------------------------------------------------------------------------------------------GCTATTGGGGGTCAGGAACAG 	1
-----------------------------------------------------------------------------------------------------------------------------------GCTATTGGGGGTCAGGAAC 	1



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
7 Physcomitrella patens GSM115095 CTTCCTGCCTCTCACTAGCTT ACTATTGGGAAGCAGGAACAG up 4 0


Secondary structure

TCCTGCTGCCTCTTCCTGCCTCTCACTAGCTTCATCCCTTCGAACCCGAAGGTACTAAGGTAAGGAACTATTGGGAAGCAGGAACAGACTGCATC
-----------CTTCCTGCCTCTCACTAGCTT 	81
-----------CTTCCTGCCTCTCACTAGC 	2
------------TTCCTGCCTCTCACTAGCTT 	1
------------------------------------------------------------------ACTATTGGGAAGCAGGAACA 	3
------------------------------------------------------------------ACTATTGGGAAGCAGGAACAG 	18
------------------------------------------------------------------ACTATTGGGAAGCAGGAAC 	1


Overlaps with: MNEST039694 MNEST051518
Overlaps with miRBase pre-miRNAs: ppt-MIR1219b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
8 Physcomitrella patens GSM115095 CTTCCTGCCTCTCACTAGCTT GCTATTGGTGGTCAGGAATAG up 3 2


Secondary structure

GGGTGAAGTGTGGACGATGGAGAGTCAGCCTCTTCCTGCCTCTCACTAGCTTCATCCCTTCCTCCCTAAATTTTAGTCTGGGAGGGAAGGAGCTATTGGTGGTCAGGAATAGCGCACCCTTCATTTATCCACACTTCAAC
--------TGTGGACGATGGAGAGTCAGCCT 	9
--------TGTGGACGATGGAGAGTCAGCC 	15
--------TGTGGACGATGGAGAGTCAG 	4
--------TGTGGACGATGGAGAGTCA 	4
---------GTGGACGATGGAGAGTCAGCC 	1
-------------------------------CTTCCTGCCTCTCACTAGCTT 	81
-------------------------------CTTCCTGCCTCTCACTAGC 	2
--------------------------------TTCCTGCCTCTCACTAGCTT 	1
-------------------------------------------------------------------------------------------GCTATTGGTGGTCAGGAATAG 	29
-------------------------------------------------------------------------------------------GCTATTGGTGGTCAGGAATA 	1
----------------------------------------------------------------------------------------------------------------CGCACCCTTCATTTATCCACACT 	12
----------------------------------------------------------------------------------------------------------------CGCACCCTTCATTTATCCA 	1


Overlaps with: MNEST039693 MNEST051517
Overlaps with miRBase pre-miRNAs: ppt-MIR1219a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
9 Physcomitrella patens GSM115095 CTTCCTGCCTCTCACTAGCTT GCTATTGGGGGTCAGGAACAG up 3 0


Secondary structure

TTGTTTTGTTAGGGTATGCGATTGATTAGGGTGAAAGAAACGAAGTGGAAGTGTGCTAGAAAAGTGAACCTCTTCCTGCCTCTCACTAGCTTCATCCCTCTCAGCTTGAGCTGCAGCCTGGGAGGGAAGGAGCTATTGGGGGTCAGGAACAGCAGACCCTTACTTTCTATTACATTCCCACCGTCCTCTGATAATTCCCTTTTCCATTGCAAGCTGCTGA
-----------------------------------------------------------------------CTTCCTGCCTCTCACTAGCTT 	81
-----------------------------------------------------------------------CTTCCTGCCTCTCACTAGC 	2
------------------------------------------------------------------------TTCCTGCCTCTCACTAGCTT 	1
-----------------------------------------------------------------------------------------------------------------------------------GCTATTGGGGGTCAGGAACAG 	3
-----------------------------------------------------------------------------------------------------------------------------------GCTATTGGGGGTCAGGAACA 	4
------------------------------------------------------------------------------------------------------------------------------------CTATTGGGGGTCAGGAACAG 	1



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
10 Physcomitrella patens GSM115095 CTTCCTGCCTCTCACTAGCTT GCTACTGAAGAGCAGGAATAG up 2 2


Secondary structure

AGGGTAACATCTCTGCGGCCTCTTCCTGCCTCTCACTAGCTTCATCCCTCAGAAGCTGAATCTTCTCAGGGAAGGAGCTACTGAAGAGCAGGAATAGATTGCACTCTTGGACTCC
---------------------CTTCCTGCCTCTCACTAGCTT 	81
---------------------CTTCCTGCCTCTCACTAGC 	2
----------------------TTCCTGCCTCTCACTAGCTT 	1
----------------------------------------------------------------------------GCTACTGAAGAGCAGGAATA 	7
----------------------------------------------------------------------------GCTACTGAAGAGCAGGAATAG 	27



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
11 Physcomitrella patens GSM313213 CTTCCTGCCTCTCACTAGCTT ACTATTGGGAAGCAGGAACAG up 4 0


Secondary structure

TCCTGCTGCCTCTTCCTGCCTCTCACTAGCTTCATCCCTTCGAACCCGAAGGTACTAAGGTAAGGAACTATTGGGAAGCAGGAACAGACTGCATC
-----------CTTCCTGCCTCTCACTAGCT 	3
-----------CTTCCTGCCTCTCACTAGCTTC 	1
-----------CTTCCTGCCTCTCACTAGCTT 	62
--------------------------------CATCCCTTCGAACCCGAAGGTA 	1
--------------------------------CATCCCTTCGAACCCGAAGGTACT 	1
------------------------------------------------------------------ACTATTGGGAAGCAGGAACAG 	6
------------------------------------------------------------------ACTATTGGGAAGCAGGAACA 	4
------------------------------------------------------------------ACTATTGGGAAGCAGGAAC 	1


Overlaps with: MNEST039694 MNEST051518
Overlaps with miRBase pre-miRNAs: ppt-MIR1219b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
12 Physcomitrella patens GSM313213 CTTCCTGCCTCTCACTAGCTT GCTATTGGGGGTCAGGAACAG up 3 0


Secondary structure

TTGTTTTGTTAGGGTATGCGATTGATTAGGGTGAAAGAAACGAAGTGGAAGTGTGCTAGAAAAGTGAACCTCTTCCTGCCTCTCACTAGCTTCATCCCTCTCAGCTTGAGCTGCAGCCTGGGAGGGAAGGAGCTATTGGGGGTCAGGAACAGCAGACCCTTACTTTCTATTACATTCCCACCGTCCTCTGATAATTCCCTTTTCCATTGCAAGCTGCTGA
-----------------------------------------------------------------------CTTCCTGCCTCTCACTAGCT 	3
-----------------------------------------------------------------------CTTCCTGCCTCTCACTAGCTTC 	1
-----------------------------------------------------------------------CTTCCTGCCTCTCACTAGCTT 	62
-----------------------------------------------------------------------------------------------------------------------------------GCTATTGGGGGTCAGGAACA 	4
-----------------------------------------------------------------------------------------------------------------------------------GCTATTGGGGGTCAGGAACAG 	1



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
13 Physcomitrella patens GSM313215 CTTCCTGCCTCTCACTAGCTT ACTATTGGGAAGCAGGAACAG up 4 0


Secondary structure

TCCTGCTGCCTCTTCCTGCCTCTCACTAGCTTCATCCCTTCGAACCCGAAGGTACTAAGGTAAGGAACTATTGGGAAGCAGGAACAGACTGCATC
-----------CTTCCTGCCTCTCACTAGCTTC 	1
-----------CTTCCTGCCTCTCACTAGCTT 	124
------------TTCCTGCCTCTCACTAGCTT 	2
----------------------------------------------CGAAGGTACTAAGGTAAGGA 	1
------------------------------------------------------------------ACTATTGGGAAGCAGGAACAG 	15
------------------------------------------------------------------ACTATTGGGAAGCAGGAACAGA 	1
------------------------------------------------------------------ACTATTGGGAAGCAGGAAC 	1
------------------------------------------------------------------ACTATTGGGAAGCAGGAACA 	12
---------------------------------------------------------------------ATTGGGAAGCAGGAACAGAC 	2


Overlaps with: MNEST039694 MNEST051518
Overlaps with miRBase pre-miRNAs: ppt-MIR1219b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
14 Physcomitrella patens GSM313215 CTTCCTGCCTCTCACTAGCTT GCTATTGGGGGTCAGGAACAG up 3 0


Secondary structure

TTGTTTTGTTAGGGTATGCGATTGATTAGGGTGAAAGAAACGAAGTGGAAGTGTGCTAGAAAAGTGAACCTCTTCCTGCCTCTCACTAGCTTCATCCCTCTCAGCTTGAGCTGCAGCCTGGGAGGGAAGGAGCTATTGGGGGTCAGGAACAGCAGACCCTTACTTTCTATTACATTCCCACCGTCCTCTGATAATTCCCTTTTCCATTGCAAGCTGCTGA
-----------------------------------------------------------------------CTTCCTGCCTCTCACTAGCTTC 	1
-----------------------------------------------------------------------CTTCCTGCCTCTCACTAGCTT 	124
------------------------------------------------------------------------TTCCTGCCTCTCACTAGCTT 	2
-----------------------------------------------------------------------------------------------------------------------------------GCTATTGGGGGTCAGGAACAG 	2
-----------------------------------------------------------------------------------------------------------------------------------GCTATTGGGGGTCAGGAACA 	4



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
15 Physcomitrella patens GSM115096 CTTCCTGCCTCTCACTAGCTT ACTATTGGGAAGCAGGAACAG up 4 0


Secondary structure

TCCTGCTGCCTCTTCCTGCCTCTCACTAGCTTCATCCCTTCGAACCCGAAGGTACTAAGGTAAGGAACTATTGGGAAGCAGGAACAGACTGCATC
-----------CTTCCTGCCTCTCACTAGCTT 	51
-----------CTTCCTGCCTCTCACTAGCT 	4
-----------CTTCCTGCCTCTCACTAGC 	1
------------TTCCTGCCTCTCACTAGCTT 	2
----------------------------------------------CGAAGGTACTAAGGTAAGGA 	1
------------------------------------------------------------------ACTATTGGGAAGCAGGAACA 	13
------------------------------------------------------------------ACTATTGGGAAGCAGGAACAG 	21
-------------------------------------------------------------------CTATTGGGAAGCAGGAACA 	2


Overlaps with: MNEST039694 MNEST051518
Overlaps with miRBase pre-miRNAs: ppt-MIR1219b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
16 Physcomitrella patens GSM115096 CTTCCTGCCTCTCACTAGCTT GCTATTGGGGGTCAGGAACAG up 3 0


Secondary structure

TTGTTTTGTTAGGGTATGCGATTGATTAGGGTGAAAGAAACGAAGTGGAAGTGTGCTAGAAAAGTGAACCTCTTCCTGCCTCTCACTAGCTTCATCCCTCTCAGCTTGAGCTGCAGCCTGGGAGGGAAGGAGCTATTGGGGGTCAGGAACAGCAGACCCTTACTTTCTATTACATTCCCACCGTCCTCTGATAATTCCCTTTTCCATTGCAAGCTGCTGA
-----------------------------------------------------------------------CTTCCTGCCTCTCACTAGCTT 	51
-----------------------------------------------------------------------CTTCCTGCCTCTCACTAGCT 	4
-----------------------------------------------------------------------CTTCCTGCCTCTCACTAGC 	1
------------------------------------------------------------------------TTCCTGCCTCTCACTAGCTT 	2
----------------------------------------------------------------------------------------------------------------------------------AGCTATTGGGGGTCAGGAA 	1
-----------------------------------------------------------------------------------------------------------------------------------GCTATTGGGGGTCAGGAACAG 	10
-----------------------------------------------------------------------------------------------------------------------------------GCTATTGGGGGTCAGGAACA 	6
-----------------------------------------------------------------------------------------------------------------------------------GCTATTGGGGGTCAGGAAC 	3



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
17 Physcomitrella patens GSM313214 CTTCCTGCCTCTCACTAGCTT ACTATTGGGAAGCAGGAACAG up 4 0


Secondary structure

TCCTGCTGCCTCTTCCTGCCTCTCACTAGCTTCATCCCTTCGAACCCGAAGGTACTAAGGTAAGGAACTATTGGGAAGCAGGAACAGACTGCATC
-----------CTTCCTGCCTCTCACTAGC 	4
-----------CTTCCTGCCTCTCACTAGCTT 	213
-----------CTTCCTGCCTCTCACTAGCT 	1
------------TTCCTGCCTCTCACTAGCTT 	3
------------TTCCTGCCTCTCACTAGCTTC 	1
--------------------------------CATCCCTTCGAACCCGAAGGTACT 	1
----------------------------------------------CGAAGGTACTAAGGTAAGGA 	1
----------------------------------------------CGAAGGTACTAAGGTAAGGAA 	1
------------------------------------------------------------------ACTATTGGGAAGCAGGAACAGA 	2
------------------------------------------------------------------ACTATTGGGAAGCAGGAACAG 	33
------------------------------------------------------------------ACTATTGGGAAGCAGGAAC 	3
------------------------------------------------------------------ACTATTGGGAAGCAGGAACA 	10
---------------------------------------------------------------------ATTGGGAAGCAGGAACAGACT 	1


Overlaps with: MNEST039694 MNEST051518
Overlaps with miRBase pre-miRNAs: ppt-MIR1219b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
18 Physcomitrella patens GSM313214 CTTCCTGCCTCTCACTAGCTT GCTATTGGGGGTCAGGAACAG up 3 0


Secondary structure

TTGTTTTGTTAGGGTATGCGATTGATTAGGGTGAAAGAAACGAAGTGGAAGTGTGCTAGAAAAGTGAACCTCTTCCTGCCTCTCACTAGCTTCATCCCTCTCAGCTTGAGCTGCAGCCTGGGAGGGAAGGAGCTATTGGGGGTCAGGAACAGCAGACCCTTACTTTCTATTACATTCCCACCGTCCTCTGATAATTCCCTTTTCCATTGCAAGCTGCTGA
-----------------------------------------------------------------------CTTCCTGCCTCTCACTAGC 	4
-----------------------------------------------------------------------CTTCCTGCCTCTCACTAGCTT 	213
-----------------------------------------------------------------------CTTCCTGCCTCTCACTAGCT 	1
------------------------------------------------------------------------TTCCTGCCTCTCACTAGCTT 	3
------------------------------------------------------------------------TTCCTGCCTCTCACTAGCTTC 	1
-----------------------------------------------------------------------------------------------------------------------------------GCTATTGGGGGTCAGGAACAG 	1
-----------------------------------------------------------------------------------------------------------------------------------GCTATTGGGGGTCAGGAAC 	2



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
19 Physcomitrella patens GSM313217 CTTCCTGCCTCTCACTAGCTT ACTATTGGGAAGCAGGAACAG up 4 0


Secondary structure

TCCTGCTGCCTCTTCCTGCCTCTCACTAGCTTCATCCCTTCGAACCCGAAGGTACTAAGGTAAGGAACTATTGGGAAGCAGGAACAGACTGCATC
-----------CTTCCTGCCTCTCACTAGCTTC 	6
-----------CTTCCTGCCTCTCACTAGC 	5
-----------CTTCCTGCCTCTCACTAGCT 	10
-----------CTTCCTGCCTCTCACTAGCTT 	85
------------TTCCTGCCTCTCACTAGCTT 	2
------------------------------------------------------------------ACTATTGGGAAGCAGGAACAG 	45
------------------------------------------------------------------ACTATTGGGAAGCAGGAAC 	4
------------------------------------------------------------------ACTATTGGGAAGCAGGAACAGA 	1
------------------------------------------------------------------ACTATTGGGAAGCAGGAACA 	15
---------------------------------------------------------------------ATTGGGAAGCAGGAACAGACT 	1


Overlaps with: MNEST039694 MNEST051518
Overlaps with miRBase pre-miRNAs: ppt-MIR1219b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
20 Physcomitrella patens GSM313217 CTTCCTGCCTCTCACTAGCTT GCTATTGGGGGTCAGGAACAG up 3 0


Secondary structure

TTGTTTTGTTAGGGTATGCGATTGATTAGGGTGAAAGAAACGAAGTGGAAGTGTGCTAGAAAAGTGAACCTCTTCCTGCCTCTCACTAGCTTCATCCCTCTCAGCTTGAGCTGCAGCCTGGGAGGGAAGGAGCTATTGGGGGTCAGGAACAGCAGACCCTTACTTTCTATTACATTCCCACCGTCCTCTGATAATTCCCTTTTCCATTGCAAGCTGCTGA
-----------------------------------------------------------------------CTTCCTGCCTCTCACTAGCTTC 	6
-----------------------------------------------------------------------CTTCCTGCCTCTCACTAGC 	5
-----------------------------------------------------------------------CTTCCTGCCTCTCACTAGCT 	10
-----------------------------------------------------------------------CTTCCTGCCTCTCACTAGCTT 	85
------------------------------------------------------------------------TTCCTGCCTCTCACTAGCTT 	2
-----------------------------------------------------------------------------------------------------------------------------------GCTATTGGGGGTCAGGAACA 	24
-----------------------------------------------------------------------------------------------------------------------------------GCTATTGGGGGTCAGGAACAG 	3
-----------------------------------------------------------------------------------------------------------------------------------GCTATTGGGGGTCAGGAAC 	29



HuntMi prediction: true miRNA