miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

Please select library, species and/or miRNA sequence.

selected mature miRNA sequence: CTTGGACTGAAGGGAGCTCCC

selected species: Physcomitrella patens

20 records found

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
1	Physcomitrella patens	GSM115097	CTTGGACTGAAGGGAGCTCCC	GAGCTCCTTCCGGTTCAATAG	down	2	0

Secondary structure

GACTAGCCGTGGGAGCTCCTTCCGGTTCAATAGTGGCTGATGTGAGGTTGCACTGCTGCCGATTCAAACTTCCGGCTTCCCTTTCTTAACACGACAGGGAATCCGAATGTCTGATGCGGGAGCTGTGCGGTCTTCAACTTTAGCGCCTCTTGGACTGAAGGGAGCTCCCAAGTCTTCG
----------------------------------------------------------------------------------------------------------------------------------------------------CTTGGACTGAAGGGAGCTCCCA 	1
----------------------------------------------------------------------------------------------------------------------------------------------------CTTGGACTGAAGGGAGCTCCC 	72
----------------------------------------------------------------------------------------------------------------------------------------------------CTTGGACTGAAGGGAGCTCC 	28
-----------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCC 	1
-----------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCC 	1

Overlaps with: MNEST039484 MNEST051390
Overlaps with miRBase pre-miRNAs: ppt-MIR319e
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
2	Physcomitrella patens	GSM313212	CTTGGACTGAAGGGAGCTCCC	GAGCTTTCTTCGGTCCAATAG	down	2	0

Secondary structure

TGTTACTAACTTCGTCAGCGTGGAGCTTTCTTCGGTCCAATAGTGGCTGAGTCGAAGGTTGTGCTGCTGCCGACTCAAACTTCCGGCTTCCCTATCCAACCCCTGGTATGGAATCCGAATGTCTGATACGGGAGCTGTTCAATCTCCGGCTTAGCATCTCTTGGACTGAAGGGAGCTCCCCGCTGTATAAGCTTGATTC
--------------------TGGAGCTTTCTTCGGTCCAAT 	1
---------------------GGAGCTTTCTTCGGTCCAATA 	1
----------------------GAGCTTTCTTCGGTCCAATAGT 	22
----------------------GAGCTTTCTTCGGTCCAATAG 	336
----------------------GAGCTTTCTTCGGTCCAAT 	55
----------------------GAGCTTTCTTCGGTCCAATA 	221
-----------------------AGCTTTCTTCGGTCCAATAGT 	3
-----------------------AGCTTTCTTCGGTCCAATAG 	18
-----------------------AGCTTTCTTCGGTCCAATA 	4
------------------------GCTTTCTTCGGTCCAATAG 	1
-------------------------------TCGGTCCAATAGTGGCTGAGT 	2
--------------------------------CGGTCCAATAGTGGCTGAGTC 	1
-------------------------------------------TGGCTGAGTCGAAGGTTGTG 	15
-------------------------------------------TGGCTGAGTCGAAGGTTGTGCT 	25
-------------------------------------------TGGCTGAGTCGAAGGTTGT 	7
-------------------------------------------TGGCTGAGTCGAAGGTTGTGC 	80
--------------------------------------------GGCTGAGTCGAAGGTTGTGC 	1
----------------------------------------------CTGAGTCGAAGGTTGTGCTGC 	1
----------------------------------------------CTGAGTCGAAGGTTGTGCTGCT 	1
----------------------------------------------------CGAAGGTTGTGCTGCTGCCGACT 	3
----------------------------------------------------CGAAGGTTGTGCTGCTGCCGA 	1
-----------------------------------------------------------TGTGCTGCTGCCGACTCAAAC 	1
----------------------------------------------------------------TGCTGCCGACTCAAACTTCCG 	2
----------------------------------------------------------------TGCTGCCGACTCAAACTTCC 	3
-----------------------------------------------------------------------------------------------CCAACCCCTGGTATGGAAT 	1
------------------------------------------------------------------------------------------------CAACCCCTGGTATGGAATC 	1
---------------------------------------------------------------------------------------------------------------------AATGTCTGATACGGGAGCTGT 	1
------------------------------------------------------------------------------------------------------------------------------TACGGGAGCTGTTCAATCTCCGGC 	6
-------------------------------------------------------------------------------------------------------------------------------ACGGGAGCTGTTCAATCTCCGGC 	1
----------------------------------------------------------------------------------------------------------------------------------GGAGCTGTTCAATCTCCGG 	1
----------------------------------------------------------------------------------------------------------------------------------GGAGCTGTTCAATCTCCGGC 	5
-----------------------------------------------------------------------------------------------------------------------------------GAGCTGTTCAATCTCCGGCTTAGC 	2
---------------------------------------------------------------------------------------------------------------------------------------TGTTCAATCTCCGGCTTAGCA 	1
---------------------------------------------------------------------------------------------------------------------------------------TGTTCAATCTCCGGCTTAGCATC 	1
------------------------------------------------------------------------------------------------------------------------------------------TCAATCTCCGGCTTAGCATC 	56
------------------------------------------------------------------------------------------------------------------------------------------TCAATCTCCGGCTTAGCATCT 	134
------------------------------------------------------------------------------------------------------------------------------------------TCAATCTCCGGCTTAGCAT 	19
--------------------------------------------------------------------------------------------------------------------------------------------AATCTCCGGCTTAGCATCT 	1
------------------------------------------------------------------------------------------------------------------------------------------------TCCGGCTTAGCATCTCTTGGA 	1
------------------------------------------------------------------------------------------------------------------------------------------------------TTAGCATCTCTTGGACTGAA 	6
------------------------------------------------------------------------------------------------------------------------------------------------------TTAGCATCTCTTGGACTGAAG 	46
-----------------------------------------------------------------------------------------------------------------------------------------------------------ATCTCTTGGACTGAAGGGAG 	1
-----------------------------------------------------------------------------------------------------------------------------------------------------------ATCTCTTGGACTGAAGGGA 	1
------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCTTGGACTGAAGGGAGCTCC 	1
------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCTTGGACTGAAGGGAGCT 	13
------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCTTGGACTGAAGGGAGCTC 	1
--------------------------------------------------------------------------------------------------------------------------------------------------------------TCTTGGACTGAAGGGAGCTCC 	7
--------------------------------------------------------------------------------------------------------------------------------------------------------------TCTTGGACTGAAGGGAGCTC 	1
---------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGGACTGAAGGGAGCTCCC 	1171
---------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGGACTGAAGGGAGCTCCCC 	14
---------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGGACTGAAGGGAGCTC 	24
---------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGGACTGAAGGGAGCTCC 	442
----------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCC 	10
----------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCCC 	6
----------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCC 	31
-----------------------------------------------------------------------------------------------------------------------------------------------------------------TGGACTGAAGGGAGCTCCC 	6
--------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTGAAGGGAGCTCCCCGCTGT 	1

Overlaps with: MNEST039483 MNEST051387 MNEST051388 MNEST051389
Overlaps with miRBase pre-miRNAs: ppt-MIR319d
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
3	Physcomitrella patens	GSM313212	CTTGGACTGAAGGGAGCTCCC	GAGCTCCTTCCGGTTCAATAG	down	2	0

Secondary structure

GACTAGCCGTGGGAGCTCCTTCCGGTTCAATAGTGGCTGATGTGAGGTTGCACTGCTGCCGATTCAAACTTCCGGCTTCCCTTTCTTAACACGACAGGGAATCCGAATGTCTGATGCGGGAGCTGTGCGGTCTTCAACTTTAGCGCCTCTTGGACTGAAGGGAGCTCCCAAGTCTTCG
-----------GGAGCTCCTTCCGGTTCAATA 	1
------------GAGCTCCTTCCGGTTCAAT 	12
------------GAGCTCCTTCCGGTTCAATA 	39
------------GAGCTCCTTCCGGTTCAATAGT 	4
------------GAGCTCCTTCCGGTTCAATAG 	12
-------------AGCTCCTTCCGGTTCAATAG 	1
---------------------------------TGGCTGATGTGAGGTTGCACT 	1
--------------------------------------------------------------------------GCTTCCCTTTCTTAACACGACAGGG 	1
-------------------------------------------------------------------------------CCTTTCTTAACACGACAGGGAAT 	1
-----------------------------------------------------------------------------------------------------------------------------TGCGGTCTTCAACTTTAGCGCC 	1
------------------------------------------------------------------------------------------------------------------------------GCGGTCTTCAACTTTAGCGCCT 	1
------------------------------------------------------------------------------------------------------------------------------GCGGTCTTCAACTTTAGCGCC 	1
---------------------------------------------------------------------------------------------------------------------------------------------------TCTTGGACTGAAGGGAGCTCC 	7
---------------------------------------------------------------------------------------------------------------------------------------------------TCTTGGACTGAAGGGAGCTC 	1
----------------------------------------------------------------------------------------------------------------------------------------------------CTTGGACTGAAGGGAGCTCCC 	1171
----------------------------------------------------------------------------------------------------------------------------------------------------CTTGGACTGAAGGGAGCTCCCA 	10
----------------------------------------------------------------------------------------------------------------------------------------------------CTTGGACTGAAGGGAGCTC 	24
----------------------------------------------------------------------------------------------------------------------------------------------------CTTGGACTGAAGGGAGCTCC 	442
-----------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCC 	10
-----------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCCA 	1
-----------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCCAA 	1
-----------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCC 	31
------------------------------------------------------------------------------------------------------------------------------------------------------TGGACTGAAGGGAGCTCCC 	6
------------------------------------------------------------------------------------------------------------------------------------------------------TGGACTGAAGGGAGCTCCCA 	2

Overlaps with: MNEST039484 MNEST051390
Overlaps with miRBase pre-miRNAs: ppt-MIR319e
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
4	Physcomitrella patens	GSM115095	CTTGGACTGAAGGGAGCTCCC	GAGCTTTCTTCGGTCCAATAG	down	2	0

Secondary structure

TGTTACTAACTTCGTCAGCGTGGAGCTTTCTTCGGTCCAATAGTGGCTGAGTCGAAGGTTGTGCTGCTGCCGACTCAAACTTCCGGCTTCCCTATCCAACCCCTGGTATGGAATCCGAATGTCTGATACGGGAGCTGTTCAATCTCCGGCTTAGCATCTCTTGGACTGAAGGGAGCTCCCCGCTGTATAAGCTTGATTC
----------------------GAGCTTTCTTCGGTCCAATAG 	29
----------------------GAGCTTTCTTCGGTCCAATA 	4
----------------------GAGCTTTCTTCGGTCCAAT 	1
-----------------------AGCTTTCTTCGGTCCAATAG 	3
-------------------------------------------TGGCTGAGTCGAAGGTTGTG 	2
-------------------------------------------TGGCTGAGTCGAAGGTTGTGC 	59
----------------------------------------------------------------TGCTGCCGACTCAAACTTCC 	1
---------------------------------------------------------------------------------------------------------------------------------------TGTTCAATCTCCGGCTTAGCA 	1
------------------------------------------------------------------------------------------------------------------------------------------TCAATCTCCGGCTTAGCATCT 	71
------------------------------------------------------------------------------------------------------------------------------------------TCAATCTCCGGCTTAGCATC 	21
------------------------------------------------------------------------------------------------------------------------------------------TCAATCTCCGGCTTAGCAT 	2
------------------------------------------------------------------------------------------------------------------------------------------TCAATCTCCGGCTTAGCATCTC 	1
------------------------------------------------------------------------------------------------------------------------------------------------------TTAGCATCTCTTGGACTGAA 	2
------------------------------------------------------------------------------------------------------------------------------------------------------TTAGCATCTCTTGGACTGAAG 	10
-------------------------------------------------------------------------------------------------------------------------------------------------------------CTCTTGGACTGAAGGGAGCTC 	1
---------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGGACTGAAGGGAGCTCCCC 	1
---------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGGACTGAAGGGAGCTCCC 	130
---------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGGACTGAAGGGAGCTCC 	77
----------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCC 	1

Overlaps with: MNEST039483 MNEST051387 MNEST051388 MNEST051389
Overlaps with miRBase pre-miRNAs: ppt-MIR319d
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
5	Physcomitrella patens	GSM115095	CTTGGACTGAAGGGAGCTCCC	GAGCTCCTTCCGGTTCAATAG	down	2	0

Secondary structure

GACTAGCCGTGGGAGCTCCTTCCGGTTCAATAGTGGCTGATGTGAGGTTGCACTGCTGCCGATTCAAACTTCCGGCTTCCCTTTCTTAACACGACAGGGAATCCGAATGTCTGATGCGGGAGCTGTGCGGTCTTCAACTTTAGCGCCTCTTGGACTGAAGGGAGCTCCCAAGTCTTCG
--------------------------------------------------------------------------------------------------------------------------------------------------CTCTTGGACTGAAGGGAGCTC 	1
----------------------------------------------------------------------------------------------------------------------------------------------------CTTGGACTGAAGGGAGCTCCC 	130
----------------------------------------------------------------------------------------------------------------------------------------------------CTTGGACTGAAGGGAGCTCC 	77
-----------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCC 	1

Overlaps with: MNEST039484 MNEST051390
Overlaps with miRBase pre-miRNAs: ppt-MIR319e
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
6	Physcomitrella patens	GSM115095	CTTGGACTGAAGGGAGCTCCC	GAGCTTCCTTCGGTTCAATAG	down	1	0

Secondary structure

TCACTGGCTGTGGGAGCTTCCTTCGGTTCAATAGTGGCTGATATGAGGTTGCACTGCTGCCGACTCAAACTTCCGGCTTCCCTCTCTTAGAATGGCAGGGAATCCGAATGTCTGATGCGGGAGCTGAGCGGTCTTCAACTCAGCTTCTCTTGGACTGAAGGGAGCTCCCATGTCTTTGT
-------------GAGCTTCCTTCGGTTCAATA 	7
-------------GAGCTTCCTTCGGTTCAATAG 	21
-------------GAGCTTCCTTCGGTTCAAT 	2
--------------AGCTTCCTTCGGTTCAATAGT 	1
--------------AGCTTCCTTCGGTTCAATAG 	11
--------------AGCTTCCTTCGGTTCAATA 	1
----------------------------------TGGCTGATATGAGGTTGCAC 	22
------------------------------------------------------TGCTGCCGACTCAAACTTCC 	1
------------------------------------------------------------------------------------------------------------------------------AGCGGTCTTCAACTCAGCTTCT 	1
-------------------------------------------------------------------------------------------------------------------------------GCGGTCTTCAACTCAGCTTCT 	7
--------------------------------------------------------------------------------------------------------------------------------------------------CTCTTGGACTGAAGGGAGCTC 	1
----------------------------------------------------------------------------------------------------------------------------------------------------CTTGGACTGAAGGGAGCTCCC 	130
----------------------------------------------------------------------------------------------------------------------------------------------------CTTGGACTGAAGGGAGCTCC 	77
-----------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCC 	1

Overlaps with: MNEST039482 MNEST051386
Overlaps with miRBase pre-miRNAs: ppt-MIR319c
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
7	Physcomitrella patens	GSM313213	CTTGGACTGAAGGGAGCTCCC	GAGCTTTCTTCGGTCCAATAG	down	2	0

Secondary structure

TGTTACTAACTTCGTCAGCGTGGAGCTTTCTTCGGTCCAATAGTGGCTGAGTCGAAGGTTGTGCTGCTGCCGACTCAAACTTCCGGCTTCCCTATCCAACCCCTGGTATGGAATCCGAATGTCTGATACGGGAGCTGTTCAATCTCCGGCTTAGCATCTCTTGGACTGAAGGGAGCTCCCCGCTGTATAAGCTTGATTC
-----------------GCGTGGAGCTTTCTTCGGTCC 	1
-------------------GTGGAGCTTTCTTCGGTCCAA 	1
--------------------TGGAGCTTTCTTCGGTCCAAT 	1
----------------------GAGCTTTCTTCGGTCCAATAGT 	21
----------------------GAGCTTTCTTCGGTCCAATAG 	372
----------------------GAGCTTTCTTCGGTCCAAT 	62
----------------------GAGCTTTCTTCGGTCCAATA 	228
-----------------------AGCTTTCTTCGGTCCAATAGT 	1
-----------------------AGCTTTCTTCGGTCCAATAG 	16
-----------------------AGCTTTCTTCGGTCCAATA 	5
-------------------------------TCGGTCCAATAGTGGCTGA 	1
-------------------------------TCGGTCCAATAGTGGCTGAGTCGA 	1
-------------------------------TCGGTCCAATAGTGGCTGAGT 	6
-------------------------------------------TGGCTGAGTCGAAGGTTGTG 	18
-------------------------------------------TGGCTGAGTCGAAGGTTGTGCT 	31
-------------------------------------------TGGCTGAGTCGAAGGTTGT 	4
-------------------------------------------TGGCTGAGTCGAAGGTTGTGC 	85
--------------------------------------------GGCTGAGTCGAAGGTTGTGC 	1
--------------------------------------------GGCTGAGTCGAAGGTTGTGCTGCT 	1
----------------------------------------------------CGAAGGTTGTGCTGCTGCCG 	1
----------------------------------------------------CGAAGGTTGTGCTGCTGCCGACT 	7
----------------------------------------------------------------TGCTGCCGACTCAAACTTCCG 	1
----------------------------------------------------------------TGCTGCCGACTCAAACTTCC 	1
-----------------------------------------------------------------GCTGCCGACTCAAACTTCCG 	1
---------------------------------------------------------------------------------------------ATCCAACCCCTGGTATGGAA 	1
---------------------------------------------------------------------------------------------------------------------AATGTCTGATACGGGAGCTGT 	1
------------------------------------------------------------------------------------------------------------------------------TACGGGAGCTGTTCAATCTCCGGCT 	1
------------------------------------------------------------------------------------------------------------------------------TACGGGAGCTGTTCAATCTCCGGC 	3
-------------------------------------------------------------------------------------------------------------------------------ACGGGAGCTGTTCAATCTCCGGC 	1
----------------------------------------------------------------------------------------------------------------------------------GGAGCTGTTCAATCTCCGG 	2
----------------------------------------------------------------------------------------------------------------------------------GGAGCTGTTCAATCTCCGGC 	1
---------------------------------------------------------------------------------------------------------------------------------------TGTTCAATCTCCGGCTTAGCA 	2
---------------------------------------------------------------------------------------------------------------------------------------TGTTCAATCTCCGGCTTAGCATC 	1
------------------------------------------------------------------------------------------------------------------------------------------TCAATCTCCGGCTTAGCAT 	14
------------------------------------------------------------------------------------------------------------------------------------------TCAATCTCCGGCTTAGCATC 	66
------------------------------------------------------------------------------------------------------------------------------------------TCAATCTCCGGCTTAGCATCTC 	1
------------------------------------------------------------------------------------------------------------------------------------------TCAATCTCCGGCTTAGCATCT 	145
-------------------------------------------------------------------------------------------------------------------------------------------CAATCTCCGGCTTAGCATCT 	1
--------------------------------------------------------------------------------------------------------------------------------------------AATCTCCGGCTTAGCATCT 	4
------------------------------------------------------------------------------------------------------------------------------------------------TCCGGCTTAGCATCTCTTGGA 	1
------------------------------------------------------------------------------------------------------------------------------------------------------TTAGCATCTCTTGGACTGAAG 	48
------------------------------------------------------------------------------------------------------------------------------------------------------TTAGCATCTCTTGGACTGA 	1
------------------------------------------------------------------------------------------------------------------------------------------------------TTAGCATCTCTTGGACTGAA 	1
--------------------------------------------------------------------------------------------------------------------------------------------------------AGCATCTCTTGGACTGAAGGGAGC 	1
----------------------------------------------------------------------------------------------------------------------------------------------------------CATCTCTTGGACTGAAGGGAGC 	1
-----------------------------------------------------------------------------------------------------------------------------------------------------------ATCTCTTGGACTGAAGGGAGC 	1
-----------------------------------------------------------------------------------------------------------------------------------------------------------ATCTCTTGGACTGAAGGGA 	2
------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCTTGGACTGAAGGGAGC 	1
------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCTTGGACTGAAGGGAGCT 	13
-------------------------------------------------------------------------------------------------------------------------------------------------------------CTCTTGGACTGAAGGGAGCT 	1
-------------------------------------------------------------------------------------------------------------------------------------------------------------CTCTTGGACTGAAGGGAGCTC 	1
--------------------------------------------------------------------------------------------------------------------------------------------------------------TCTTGGACTGAAGGGAGCTCCC 	1
--------------------------------------------------------------------------------------------------------------------------------------------------------------TCTTGGACTGAAGGGAGCTCC 	6
--------------------------------------------------------------------------------------------------------------------------------------------------------------TCTTGGACTGAAGGGAGCTC 	1
---------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGGACTGAAGGGAGCTC 	21
---------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGGACTGAAGGGAGCTCCC 	1254
---------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGGACTGAAGGGAGCTCCCC 	6
---------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGGACTGAAGGGAGCTCC 	367
----------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCC 	13
----------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCC 	34
-----------------------------------------------------------------------------------------------------------------------------------------------------------------TGGACTGAAGGGAGCTCCC 	12
--------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTGAAGGGAGCTCCCCGCTGT 	1

Overlaps with: MNEST039483 MNEST051387 MNEST051388 MNEST051389
Overlaps with miRBase pre-miRNAs: ppt-MIR319d
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
8	Physcomitrella patens	GSM313213	CTTGGACTGAAGGGAGCTCCC	GAGCTCCTTCCGGTTCAATAG	down	2	0

Secondary structure

GACTAGCCGTGGGAGCTCCTTCCGGTTCAATAGTGGCTGATGTGAGGTTGCACTGCTGCCGATTCAAACTTCCGGCTTCCCTTTCTTAACACGACAGGGAATCCGAATGTCTGATGCGGGAGCTGTGCGGTCTTCAACTTTAGCGCCTCTTGGACTGAAGGGAGCTCCCAAGTCTTCG
-----------GGAGCTCCTTCCGGTTCAAT 	1
-----------GGAGCTCCTTCCGGTTCAATA 	1
------------GAGCTCCTTCCGGTTCAAT 	9
------------GAGCTCCTTCCGGTTCAATA 	41
------------GAGCTCCTTCCGGTTCAATAG 	10
-------------AGCTCCTTCCGGTTCAATA 	3
--------------------------------------------------------TGCCGATTCAAACTTCCGGCT 	1
----------------------------------------------------------------------------TTCCCTTTCTTAACACGACAGGGA 	1
-------------------------------------------------------------------------------CCTTTCTTAACACGACAGGGAAT 	1
---------------------------------------------------------------------------------------------------------AATGTCTGATGCGGGAGCT 	1
-------------------------------------------------------------------------------------------------------------------------------------------------CCTCTTGGACTGAAGGGAGCT 	1
--------------------------------------------------------------------------------------------------------------------------------------------------CTCTTGGACTGAAGGGAGCT 	1
--------------------------------------------------------------------------------------------------------------------------------------------------CTCTTGGACTGAAGGGAGCTC 	1
---------------------------------------------------------------------------------------------------------------------------------------------------TCTTGGACTGAAGGGAGCTCCC 	1
---------------------------------------------------------------------------------------------------------------------------------------------------TCTTGGACTGAAGGGAGCTCC 	6
---------------------------------------------------------------------------------------------------------------------------------------------------TCTTGGACTGAAGGGAGCTC 	1
----------------------------------------------------------------------------------------------------------------------------------------------------CTTGGACTGAAGGGAGCTC 	21
----------------------------------------------------------------------------------------------------------------------------------------------------CTTGGACTGAAGGGAGCTCCC 	1254
----------------------------------------------------------------------------------------------------------------------------------------------------CTTGGACTGAAGGGAGCTCCCA 	24
----------------------------------------------------------------------------------------------------------------------------------------------------CTTGGACTGAAGGGAGCTCC 	367
----------------------------------------------------------------------------------------------------------------------------------------------------CTTGGACTGAAGGGAGCTCCCAA 	2
-----------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCC 	13
-----------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCCA 	2
-----------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCC 	34
------------------------------------------------------------------------------------------------------------------------------------------------------TGGACTGAAGGGAGCTCCCA 	2
------------------------------------------------------------------------------------------------------------------------------------------------------TGGACTGAAGGGAGCTCCC 	12
---------------------------------------------------------------------------------------------------------------------------------------------------------ACTGAAGGGAGCTCCCAAGT 	1

Overlaps with: MNEST039484 MNEST051390
Overlaps with miRBase pre-miRNAs: ppt-MIR319e
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
9	Physcomitrella patens	GSM313215	CTTGGACTGAAGGGAGCTCCC	GAGCTTTCTTCGGTCCAATAG	down	2	0

Secondary structure

TGTTACTAACTTCGTCAGCGTGGAGCTTTCTTCGGTCCAATAGTGGCTGAGTCGAAGGTTGTGCTGCTGCCGACTCAAACTTCCGGCTTCCCTATCCAACCCCTGGTATGGAATCCGAATGTCTGATACGGGAGCTGTTCAATCTCCGGCTTAGCATCTCTTGGACTGAAGGGAGCTCCCCGCTGTATAAGCTTGATTC
----------------AGCGTGGAGCTTTCTTCGGTC 	4
-----------------GCGTGGAGCTTTCTTCGGTCC 	5
------------------CGTGGAGCTTTCTTCGGTCCAATAG 	1
-------------------GTGGAGCTTTCTTCGGTCCAA 	7
----------------------GAGCTTTCTTCGGTCCAAT 	20
----------------------GAGCTTTCTTCGGTCCAATAGT 	75
----------------------GAGCTTTCTTCGGTCCAATAG 	1104
----------------------GAGCTTTCTTCGGTCCAATA 	289
-----------------------AGCTTTCTTCGGTCCAATAGT 	2
-----------------------AGCTTTCTTCGGTCCAATAG 	21
-----------------------AGCTTTCTTCGGTCCAATA 	3
-------------------------CTTTCTTCGGTCCAATAGTGG 	1
--------------------------TTTCTTCGGTCCAATAGTGG 	1
-------------------------------TCGGTCCAATAGTGGCTGA 	1
-------------------------------TCGGTCCAATAGTGGCTGAGTC 	1
-------------------------------TCGGTCCAATAGTGGCTGAGT 	61
--------------------------------CGGTCCAATAGTGGCTGAGTC 	7
---------------------------------GGTCCAATAGTGGCTGAGT 	1
-------------------------------------------TGGCTGAGTCGAAGGTTGTG 	138
-------------------------------------------TGGCTGAGTCGAAGGTTGTGCT 	45
-------------------------------------------TGGCTGAGTCGAAGGTTGT 	21
-------------------------------------------TGGCTGAGTCGAAGGTTGTGC 	1699
--------------------------------------------GGCTGAGTCGAAGGTTGTGC 	19
--------------------------------------------GGCTGAGTCGAAGGTTGTG 	3
--------------------------------------------GGCTGAGTCGAAGGTTGTGCT 	3
---------------------------------------------GCTGAGTCGAAGGTTGTGC 	1
----------------------------------------------CTGAGTCGAAGGTTGTGCTGC 	1
----------------------------------------------------CGAAGGTTGTGCTGCTGCCGA 	5
----------------------------------------------------------------TGCTGCCGACTCAAACTTCCG 	5
----------------------------------------------------------------TGCTGCCGACTCAAACTTCC 	4
---------------------------------------------------------------------------------------------------------------------AATGTCTGATACGGGAGCTGT 	13
----------------------------------------------------------------------------------------------------------------------------GATACGGGAGCTGTTCAATCTCCGGC 	1
-------------------------------------------------------------------------------------------------------------------------------ACGGGAGCTGTTCAATCTCCGGC 	1
--------------------------------------------------------------------------------------------------------------------------------CGGGAGCTGTTCAATCTCCGGC 	1
---------------------------------------------------------------------------------------------------------------------------------GGGAGCTGTTCAATCTCCGGC 	6
----------------------------------------------------------------------------------------------------------------------------------GGAGCTGTTCAATCTCCGGC 	6
---------------------------------------------------------------------------------------------------------------------------------------TGTTCAATCTCCGGCTTAGCAT 	2
---------------------------------------------------------------------------------------------------------------------------------------TGTTCAATCTCCGGCTTAGCA 	12
-----------------------------------------------------------------------------------------------------------------------------------------TTCAATCTCCGGCTTAGCATC 	1
------------------------------------------------------------------------------------------------------------------------------------------TCAATCTCCGGCTTAGCATC 	73
------------------------------------------------------------------------------------------------------------------------------------------TCAATCTCCGGCTTAGCATCTC 	1
------------------------------------------------------------------------------------------------------------------------------------------TCAATCTCCGGCTTAGCATCT 	352
------------------------------------------------------------------------------------------------------------------------------------------TCAATCTCCGGCTTAGCAT 	8
--------------------------------------------------------------------------------------------------------------------------------------------AATCTCCGGCTTAGCATCT 	2
-----------------------------------------------------------------------------------------------------------------------------------------------------CTTAGCATCTCTTGGACTGAA 	1
------------------------------------------------------------------------------------------------------------------------------------------------------TTAGCATCTCTTGGACTGAA 	7
------------------------------------------------------------------------------------------------------------------------------------------------------TTAGCATCTCTTGGACTGAAG 	388
-------------------------------------------------------------------------------------------------------------------------------------------------------TAGCATCTCTTGGACTGAAG 	4
---------------------------------------------------------------------------------------------------------------------------------------------------------GCATCTCTTGGACTGAAGGGAGCTCC 	1
-----------------------------------------------------------------------------------------------------------------------------------------------------------ATCTCTTGGACTGAAGGGAGC 	3
------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCTTGGACTGAAGGGAGC 	2
------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCTTGGACTGAAGGGAGCT 	19
-------------------------------------------------------------------------------------------------------------------------------------------------------------CTCTTGGACTGAAGGGAGCTCC 	2
-------------------------------------------------------------------------------------------------------------------------------------------------------------CTCTTGGACTGAAGGGAGCT 	1
--------------------------------------------------------------------------------------------------------------------------------------------------------------TCTTGGACTGAAGGGAGCTCCC 	14
--------------------------------------------------------------------------------------------------------------------------------------------------------------TCTTGGACTGAAGGGAGCTCC 	31
--------------------------------------------------------------------------------------------------------------------------------------------------------------TCTTGGACTGAAGGGAGCTC 	1
--------------------------------------------------------------------------------------------------------------------------------------------------------------TCTTGGACTGAAGGGAGCT 	1
---------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGGACTGAAGGGAGCTCC 	2273
---------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGGACTGAAGGGAGCTC 	56
---------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGGACTGAAGGGAGCTCCCC 	23
---------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGGACTGAAGGGAGCTCCC 	11233
----------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCCC 	2
----------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCC 	179
----------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCC 	36
-----------------------------------------------------------------------------------------------------------------------------------------------------------------TGGACTGAAGGGAGCTCCC 	9
---------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGAAGGGAGCTCCCCGCTGT 	1
----------------------------------------------------------------------------------------------------------------------------------------------------------------------TGAAGGGAGCTCCCCGCTGT 	1

Overlaps with: MNEST039483 MNEST051387 MNEST051388 MNEST051389
Overlaps with miRBase pre-miRNAs: ppt-MIR319d
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
10	Physcomitrella patens	GSM313215	CTTGGACTGAAGGGAGCTCCC	GAGCTCCTTCCGGTTCAATAG	down	2	0

Secondary structure

GACTAGCCGTGGGAGCTCCTTCCGGTTCAATAGTGGCTGATGTGAGGTTGCACTGCTGCCGATTCAAACTTCCGGCTTCCCTTTCTTAACACGACAGGGAATCCGAATGTCTGATGCGGGAGCTGTGCGGTCTTCAACTTTAGCGCCTCTTGGACTGAAGGGAGCTCCCAAGTCTTCG
----------GGGAGCTCCTTCCGGTTCAAT 	1
------------GAGCTCCTTCCGGTTCAATA 	3
------------GAGCTCCTTCCGGTTCAATAGT 	1
------------GAGCTCCTTCCGGTTCAAT 	2
------------GAGCTCCTTCCGGTTCAATAG 	9
-------------AGCTCCTTCCGGTTCAATAG 	2
---------------------------------------------------------------------------------------------------------AATGTCTGATGCGGGAGCTGT 	2
---------------------------------------------------------------------------------------------------------AATGTCTGATGCGGGAGCTG 	1
--------------------------------------------------------------------------------------------------------------------------------------------------CTCTTGGACTGAAGGGAGCTCC 	2
--------------------------------------------------------------------------------------------------------------------------------------------------CTCTTGGACTGAAGGGAGCT 	1
---------------------------------------------------------------------------------------------------------------------------------------------------TCTTGGACTGAAGGGAGCTCCC 	14
---------------------------------------------------------------------------------------------------------------------------------------------------TCTTGGACTGAAGGGAGCTCC 	31
---------------------------------------------------------------------------------------------------------------------------------------------------TCTTGGACTGAAGGGAGCTC 	1
---------------------------------------------------------------------------------------------------------------------------------------------------TCTTGGACTGAAGGGAGCT 	1
----------------------------------------------------------------------------------------------------------------------------------------------------CTTGGACTGAAGGGAGCTCC 	2273
----------------------------------------------------------------------------------------------------------------------------------------------------CTTGGACTGAAGGGAGCTC 	56
----------------------------------------------------------------------------------------------------------------------------------------------------CTTGGACTGAAGGGAGCTCCCA 	13
----------------------------------------------------------------------------------------------------------------------------------------------------CTTGGACTGAAGGGAGCTCCC 	11233
-----------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCCA 	2
-----------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCC 	179
-----------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCC 	36
------------------------------------------------------------------------------------------------------------------------------------------------------TGGACTGAAGGGAGCTCCC 	9
------------------------------------------------------------------------------------------------------------------------------------------------------TGGACTGAAGGGAGCTCCCA 	1
---------------------------------------------------------------------------------------------------------------------------------------------------------ACTGAAGGGAGCTCCCAAGT 	1

Overlaps with: MNEST039484 MNEST051390
Overlaps with miRBase pre-miRNAs: ppt-MIR319e
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
11	Physcomitrella patens	GSM313215	CTTGGACTGAAGGGAGCTCCC	GAGCTTCCTTCGGTTCAATAG	down	1	0

Secondary structure

TCACTGGCTGTGGGAGCTTCCTTCGGTTCAATAGTGGCTGATATGAGGTTGCACTGCTGCCGACTCAAACTTCCGGCTTCCCTCTCTTAGAATGGCAGGGAATCCGAATGTCTGATGCGGGAGCTGAGCGGTCTTCAACTCAGCTTCTCTTGGACTGAAGGGAGCTCCCATGTCTTTGT
----------TGGGAGCTTCCTTCGGTTCAA 	1
-----------GGGAGCTTCCTTCGGTTCAAT 	1
-------------GAGCTTCCTTCGGTTCAATA 	191
-------------GAGCTTCCTTCGGTTCAATAGT 	277
-------------GAGCTTCCTTCGGTTCAATAG 	2551
-------------GAGCTTCCTTCGGTTCAAT 	18
--------------AGCTTCCTTCGGTTCAATAG 	214
--------------AGCTTCCTTCGGTTCAATAGT 	53
--------------AGCTTCCTTCGGTTCAATA 	19
--------------------CTTCGGTTCAATAGTGGCTGA 	1
---------------------TTCGGTTCAATAGTGGCTGA 	2
---------------------------------GTGGCTGATATGAGGTTGCAC 	5
----------------------------------TGGCTGATATGAGGTTGCACTG 	1
----------------------------------TGGCTGATATGAGGTTGCAC 	1606
----------------------------------TGGCTGATATGAGGTTGCA 	23
----------------------------------TGGCTGATATGAGGTTGCACT 	13
-----------------------------------GGCTGATATGAGGTTGCACT 	1
-----------------------------------GGCTGATATGAGGTTGCAC 	10
-------------------------------------CTGATATGAGGTTGCACTGC 	1
------------------------------------------------------TGCTGCCGACTCAAACTTCCG 	5
------------------------------------------------------TGCTGCCGACTCAAACTTCC 	4
---------------------------------------------------------------------------GCTTCCCTCTCTTAGAATGGCA 	3
----------------------------------------------------------------------------------------------------------AATGTCTGATGCGGGAGCTGA 	43
----------------------------------------------------------------------------------------------------------AATGTCTGATGCGGGAGCTG 	1
----------------------------------------------------------------------------------------------------------------------------TGAGCGGTCTTCAACTCAGCT 	2
----------------------------------------------------------------------------------------------------------------------------TGAGCGGTCTTCAACTCAGC 	1
-----------------------------------------------------------------------------------------------------------------------------GAGCGGTCTTCAACTCAGCTTC 	1
-------------------------------------------------------------------------------------------------------------------------------GCGGTCTTCAACTCAGCTTC 	26
-------------------------------------------------------------------------------------------------------------------------------GCGGTCTTCAACTCAGCTTCT 	193
-------------------------------------------------------------------------------------------------------------------------------GCGGTCTTCAACTCAGCTT 	4
----------------------------------------------------------------------------------------------------------------------------------------------GCTTCTCTTGGACTGAAGGGAGCTC 	1
----------------------------------------------------------------------------------------------------------------------------------------------GCTTCTCTTGGACTGAAGGGAGCTCC 	1
-------------------------------------------------------------------------------------------------------------------------------------------------TCTCTTGGACTGAAGGGAGC 	2
-------------------------------------------------------------------------------------------------------------------------------------------------TCTCTTGGACTGAAGGGAGCT 	19
--------------------------------------------------------------------------------------------------------------------------------------------------CTCTTGGACTGAAGGGAGCTCC 	2
--------------------------------------------------------------------------------------------------------------------------------------------------CTCTTGGACTGAAGGGAGCT 	1
---------------------------------------------------------------------------------------------------------------------------------------------------TCTTGGACTGAAGGGAGCTCCC 	14
---------------------------------------------------------------------------------------------------------------------------------------------------TCTTGGACTGAAGGGAGCTCC 	31
---------------------------------------------------------------------------------------------------------------------------------------------------TCTTGGACTGAAGGGAGCTC 	1
---------------------------------------------------------------------------------------------------------------------------------------------------TCTTGGACTGAAGGGAGCT 	1
----------------------------------------------------------------------------------------------------------------------------------------------------CTTGGACTGAAGGGAGCTCC 	2273
----------------------------------------------------------------------------------------------------------------------------------------------------CTTGGACTGAAGGGAGCTC 	56
----------------------------------------------------------------------------------------------------------------------------------------------------CTTGGACTGAAGGGAGCTCCCA 	13
----------------------------------------------------------------------------------------------------------------------------------------------------CTTGGACTGAAGGGAGCTCCC 	11233
-----------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCCA 	2
-----------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCC 	179
-----------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCC 	36
------------------------------------------------------------------------------------------------------------------------------------------------------TGGACTGAAGGGAGCTCCC 	9
------------------------------------------------------------------------------------------------------------------------------------------------------TGGACTGAAGGGAGCTCCCA 	1

Overlaps with: MNEST039482 MNEST051386
Overlaps with miRBase pre-miRNAs: ppt-MIR319c
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
12	Physcomitrella patens	GSM115096	CTTGGACTGAAGGGAGCTCCC	GAGCTCCTTCCGGTTCAATAG	down	2	0

Secondary structure

GACTAGCCGTGGGAGCTCCTTCCGGTTCAATAGTGGCTGATGTGAGGTTGCACTGCTGCCGATTCAAACTTCCGGCTTCCCTTTCTTAACACGACAGGGAATCCGAATGTCTGATGCGGGAGCTGTGCGGTCTTCAACTTTAGCGCCTCTTGGACTGAAGGGAGCTCCCAAGTCTTCG
------------GAGCTCCTTCCGGTTCAATA 	1
---------------------------------------------------------------------------------------------------------------------------------------------------TCTTGGACTGAAGGGAGCTCC 	5
---------------------------------------------------------------------------------------------------------------------------------------------------TCTTGGACTGAAGGGAGCTCCC 	2
----------------------------------------------------------------------------------------------------------------------------------------------------CTTGGACTGAAGGGAGCTCCCA 	2
----------------------------------------------------------------------------------------------------------------------------------------------------CTTGGACTGAAGGGAGCTC 	11
----------------------------------------------------------------------------------------------------------------------------------------------------CTTGGACTGAAGGGAGCTCCC 	502
----------------------------------------------------------------------------------------------------------------------------------------------------CTTGGACTGAAGGGAGCTCC 	195
-----------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCC 	2
-----------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCC 	1
------------------------------------------------------------------------------------------------------------------------------------------------------TGGACTGAAGGGAGCTCCC 	2

Overlaps with: MNEST039484 MNEST051390
Overlaps with miRBase pre-miRNAs: ppt-MIR319e
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
13	Physcomitrella patens	GSM115096	CTTGGACTGAAGGGAGCTCCC	GAGCTTCCTTCGGTTCAATAG	down	1	0

Secondary structure

TCACTGGCTGTGGGAGCTTCCTTCGGTTCAATAGTGGCTGATATGAGGTTGCACTGCTGCCGACTCAAACTTCCGGCTTCCCTCTCTTAGAATGGCAGGGAATCCGAATGTCTGATGCGGGAGCTGAGCGGTCTTCAACTCAGCTTCTCTTGGACTGAAGGGAGCTCCCATGTCTTTGT
------------GGAGCTTCCTTCGGTTCAATA 	1
-------------GAGCTTCCTTCGGTTCAATA 	67
-------------GAGCTTCCTTCGGTTCAATAGT 	4
-------------GAGCTTCCTTCGGTTCAAT 	11
-------------GAGCTTCCTTCGGTTCAATAG 	92
--------------AGCTTCCTTCGGTTCAATAGT 	4
--------------AGCTTCCTTCGGTTCAATAG 	38
--------------AGCTTCCTTCGGTTCAATA 	33
---------------GCTTCCTTCGGTTCAATAG 	7
----------------------------------TGGCTGATATGAGGTTGCA 	4
----------------------------------TGGCTGATATGAGGTTGCAC 	37
------------------------------------------------------TGCTGCCGACTCAAACTTCC 	3
------------------------------------------------------TGCTGCCGACTCAAACTTCCG 	2
-------------------------------------------------------------------------------------------------------------------------------GCGGTCTTCAACTCAGCTTC 	2
-------------------------------------------------------------------------------------------------------------------------------GCGGTCTTCAACTCAGCTTCT 	9
---------------------------------------------------------------------------------------------------------------------------------------------------TCTTGGACTGAAGGGAGCTCC 	5
---------------------------------------------------------------------------------------------------------------------------------------------------TCTTGGACTGAAGGGAGCTCCC 	2
----------------------------------------------------------------------------------------------------------------------------------------------------CTTGGACTGAAGGGAGCTCCCA 	2
----------------------------------------------------------------------------------------------------------------------------------------------------CTTGGACTGAAGGGAGCTC 	11
----------------------------------------------------------------------------------------------------------------------------------------------------CTTGGACTGAAGGGAGCTCCC 	502
----------------------------------------------------------------------------------------------------------------------------------------------------CTTGGACTGAAGGGAGCTCC 	195
-----------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCC 	2
-----------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCC 	1
------------------------------------------------------------------------------------------------------------------------------------------------------TGGACTGAAGGGAGCTCCC 	2

Overlaps with: MNEST039482 MNEST051386
Overlaps with miRBase pre-miRNAs: ppt-MIR319c
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
14	Physcomitrella patens	GSM313216	CTTGGACTGAAGGGAGCTCCC	GAGCTCCTTCCGGTTCAATAG	down	2	0

Secondary structure

GACTAGCCGTGGGAGCTCCTTCCGGTTCAATAGTGGCTGATGTGAGGTTGCACTGCTGCCGATTCAAACTTCCGGCTTCCCTTTCTTAACACGACAGGGAATCCGAATGTCTGATGCGGGAGCTGTGCGGTCTTCAACTTTAGCGCCTCTTGGACTGAAGGGAGCTCCCAAGTCTTCG
-----------GGAGCTCCTTCCGGTTCAAT 	1
------------GAGCTCCTTCCGGTTCAAT 	13
------------GAGCTCCTTCCGGTTCAATA 	53
------------GAGCTCCTTCCGGTTCAATAGT 	7
------------GAGCTCCTTCCGGTTCAATAG 	55
-------------AGCTCCTTCCGGTTCAATA 	1
-------------AGCTCCTTCCGGTTCAATAG 	2
-----------------------------------GCTGATGTGAGGTTGCACTG 	1
---------------------------------------------------------------------------------------------------------AATGTCTGATGCGGGAGCTGT 	2
------------------------------------------------------------------------------------------------------------------------------GCGGTCTTCAACTTTAGCGCCT 	4
--------------------------------------------------------------------------------------------------------------------------------------------------CTCTTGGACTGAAGGGAGCTC 	1
---------------------------------------------------------------------------------------------------------------------------------------------------TCTTGGACTGAAGGGAGCTCCC 	3
---------------------------------------------------------------------------------------------------------------------------------------------------TCTTGGACTGAAGGGAGCTCC 	15
----------------------------------------------------------------------------------------------------------------------------------------------------CTTGGACTGAAGGGAGCTCCC 	1811
----------------------------------------------------------------------------------------------------------------------------------------------------CTTGGACTGAAGGGAGCTCCCA 	42
----------------------------------------------------------------------------------------------------------------------------------------------------CTTGGACTGAAGGGAGCTC 	7
----------------------------------------------------------------------------------------------------------------------------------------------------CTTGGACTGAAGGGAGCTCC 	516
-----------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCC 	17
-----------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCCA 	3
-----------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCC 	47
------------------------------------------------------------------------------------------------------------------------------------------------------TGGACTGAAGGGAGCTCCC 	12
------------------------------------------------------------------------------------------------------------------------------------------------------TGGACTGAAGGGAGCTCCCA 	4
-------------------------------------------------------------------------------------------------------------------------------------------------------GGACTGAAGGGAGCTCCCA 	1

Overlaps with: MNEST039484 MNEST051390
Overlaps with miRBase pre-miRNAs: ppt-MIR319e
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
15	Physcomitrella patens	GSM313216	CTTGGACTGAAGGGAGCTCCC	GAGCTTCCTTCGGTTCAATAG	down	1	0

Secondary structure

TCACTGGCTGTGGGAGCTTCCTTCGGTTCAATAGTGGCTGATATGAGGTTGCACTGCTGCCGACTCAAACTTCCGGCTTCCCTCTCTTAGAATGGCAGGGAATCCGAATGTCTGATGCGGGAGCTGAGCGGTCTTCAACTCAGCTTCTCTTGGACTGAAGGGAGCTCCCATGTCTTTGT
----------TGGGAGCTTCCTTCGGTTCAA 	1
-------------GAGCTTCCTTCGGTTCAATAG 	789
-------------GAGCTTCCTTCGGTTCAATA 	153
-------------GAGCTTCCTTCGGTTCAATAGT 	98
-------------GAGCTTCCTTCGGTTCAAT 	61
--------------AGCTTCCTTCGGTTCAATA 	10
--------------AGCTTCCTTCGGTTCAATAG 	265
--------------AGCTTCCTTCGGTTCAATAGT 	26
----------------CTTCCTTCGGTTCAATAGT 	1
--------------------CTTCGGTTCAATAGTGGCTGA 	3
---------------------TTCGGTTCAATAGTGGCTGA 	9
---------------------------------GTGGCTGATATGAGGTTGCAC 	2
----------------------------------TGGCTGATATGAGGTTGCA 	16
----------------------------------TGGCTGATATGAGGTTGCAC 	702
----------------------------------TGGCTGATATGAGGTTGCACT 	2
-----------------------------------GGCTGATATGAGGTTGCAC 	4
------------------------------------------------------TGCTGCCGACTCAAACTTCCG 	3
------------------------------------------------------TGCTGCCGACTCAAACTTCC 	2
---------------------------------------------------------------------------GCTTCCCTCTCTTAGAATGGCA 	1
---------------------------------------------------------------------------GCTTCCCTCTCTTAGAATGGCAGGGA 	1
---------------------------------------------------------------------------GCTTCCCTCTCTTAGAATGGCAGGG 	1
-----------------------------------------------------------------------------TTCCCTCTCTTAGAATGGCAGGGA 	1
------------------------------------------------------------------------------TCCCTCTCTTAGAATGGCAGGGAAT 	1
----------------------------------------------------------------------------------------------------------AATGTCTGATGCGGGAGCTGA 	48
------------------------------------------------------------------------------------------------------------TGTCTGATGCGGGAGCTGA 	1
----------------------------------------------------------------------------------------------------------------------------TGAGCGGTCTTCAACTCAGCT 	1
-------------------------------------------------------------------------------------------------------------------------------GCGGTCTTCAACTCAGCTTCT 	229
-------------------------------------------------------------------------------------------------------------------------------GCGGTCTTCAACTCAGCTT 	6
-------------------------------------------------------------------------------------------------------------------------------GCGGTCTTCAACTCAGCTTC 	42
-------------------------------------------------------------------------------------------------------------------------------GCGGTCTTCAACTCAGCTTCTC 	3
---------------------------------------------------------------------------------------------------------------------------------GGTCTTCAACTCAGCTTCT 	1
---------------------------------------------------------------------------------------------------------------------------------------------AGCTTCTCTTGGACTGAAGGGAGC 	3
---------------------------------------------------------------------------------------------------------------------------------------------AGCTTCTCTTGGACTGAAGGG 	2
----------------------------------------------------------------------------------------------------------------------------------------------GCTTCTCTTGGACTGAAGGGAGCTC 	1
----------------------------------------------------------------------------------------------------------------------------------------------GCTTCTCTTGGACTGAAGGGAGCT 	1
-------------------------------------------------------------------------------------------------------------------------------------------------TCTCTTGGACTGAAGGGAGC 	10
-------------------------------------------------------------------------------------------------------------------------------------------------TCTCTTGGACTGAAGGGAGCT 	21
-------------------------------------------------------------------------------------------------------------------------------------------------TCTCTTGGACTGAAGGGAGCTC 	1
--------------------------------------------------------------------------------------------------------------------------------------------------CTCTTGGACTGAAGGGAGCTC 	1
---------------------------------------------------------------------------------------------------------------------------------------------------TCTTGGACTGAAGGGAGCTCCC 	3
---------------------------------------------------------------------------------------------------------------------------------------------------TCTTGGACTGAAGGGAGCTCC 	15
----------------------------------------------------------------------------------------------------------------------------------------------------CTTGGACTGAAGGGAGCTCCC 	1811
----------------------------------------------------------------------------------------------------------------------------------------------------CTTGGACTGAAGGGAGCTCCCA 	42
----------------------------------------------------------------------------------------------------------------------------------------------------CTTGGACTGAAGGGAGCTC 	7
----------------------------------------------------------------------------------------------------------------------------------------------------CTTGGACTGAAGGGAGCTCC 	516
----------------------------------------------------------------------------------------------------------------------------------------------------CTTGGACTGAAGGGAGCTCCCAT 	1
-----------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCC 	17
-----------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCCA 	3
-----------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCC 	47
------------------------------------------------------------------------------------------------------------------------------------------------------TGGACTGAAGGGAGCTCCC 	12
------------------------------------------------------------------------------------------------------------------------------------------------------TGGACTGAAGGGAGCTCCCA 	4
------------------------------------------------------------------------------------------------------------------------------------------------------TGGACTGAAGGGAGCTCCCAT 	1
-------------------------------------------------------------------------------------------------------------------------------------------------------GGACTGAAGGGAGCTCCCA 	1

Overlaps with: MNEST039482 MNEST051386
Overlaps with miRBase pre-miRNAs: ppt-MIR319c
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
16	Physcomitrella patens	GSM313214	CTTGGACTGAAGGGAGCTCCC	GAGCTTTCTTCGGTCCAATAG	down	2	0

Secondary structure

TGTTACTAACTTCGTCAGCGTGGAGCTTTCTTCGGTCCAATAGTGGCTGAGTCGAAGGTTGTGCTGCTGCCGACTCAAACTTCCGGCTTCCCTATCCAACCCCTGGTATGGAATCCGAATGTCTGATACGGGAGCTGTTCAATCTCCGGCTTAGCATCTCTTGGACTGAAGGGAGCTCCCCGCTGTATAAGCTTGATTC
----------------AGCGTGGAGCTTTCTTCGGTC 	5
----------------AGCGTGGAGCTTTCTTCGGTCC 	1
-----------------GCGTGGAGCTTTCTTCGGTC 	1
-----------------GCGTGGAGCTTTCTTCGGTCC 	4
-------------------GTGGAGCTTTCTTCGGTCCAA 	7
--------------------TGGAGCTTTCTTCGGTCCAAT 	1
---------------------GGAGCTTTCTTCGGTCCAATAG 	1
----------------------GAGCTTTCTTCGGTCCAAT 	50
----------------------GAGCTTTCTTCGGTCCAATAGT 	152
----------------------GAGCTTTCTTCGGTCCAATAG 	1761
----------------------GAGCTTTCTTCGGTCCAATA 	645
-----------------------AGCTTTCTTCGGTCCAATAGT 	12
-----------------------AGCTTTCTTCGGTCCAATAG 	71
-----------------------AGCTTTCTTCGGTCCAATA 	11
------------------------GCTTTCTTCGGTCCAATAG 	3
-------------------------CTTTCTTCGGTCCAATAGTGG 	1
-------------------------------TCGGTCCAATAGTGGCTGAG 	1
-------------------------------TCGGTCCAATAGTGGCTGA 	1
-------------------------------TCGGTCCAATAGTGGCTGAGT 	61
--------------------------------CGGTCCAATAGTGGCTGAGT 	4
--------------------------------CGGTCCAATAGTGGCTGAGTC 	4
---------------------------------GGTCCAATAGTGGCTGAGTCGA 	1
------------------------------------CCAATAGTGGCTGAGTCGAA 	1
-------------------------------------CAATAGTGGCTGAGTCGAAGGT 	2
------------------------------------------GTGGCTGAGTCGAAGGTTGTGC 	1
-------------------------------------------TGGCTGAGTCGAAGGTTGTG 	222
-------------------------------------------TGGCTGAGTCGAAGGTTGTGCT 	84
-------------------------------------------TGGCTGAGTCGAAGGTTGT 	29
-------------------------------------------TGGCTGAGTCGAAGGTTGTGC 	2644
--------------------------------------------GGCTGAGTCGAAGGTTGTGC 	37
--------------------------------------------GGCTGAGTCGAAGGTTGTGCTGC 	1
--------------------------------------------GGCTGAGTCGAAGGTTGTG 	2
--------------------------------------------GGCTGAGTCGAAGGTTGTGCTG 	1
---------------------------------------------GCTGAGTCGAAGGTTGTGC 	7
---------------------------------------------GCTGAGTCGAAGGTTGTGCTGC 	1
----------------------------------------------CTGAGTCGAAGGTTGTGCTGC 	2
-----------------------------------------------TGAGTCGAAGGTTGTGCTGC 	1
-----------------------------------------------TGAGTCGAAGGTTGTGCTGCTG 	1
----------------------------------------------------CGAAGGTTGTGCTGCTGCCGA 	4
----------------------------------------------------CGAAGGTTGTGCTGCTGCCG 	1
----------------------------------------------------------------TGCTGCCGACTCAAACTTCCG 	2
----------------------------------------------------------------TGCTGCCGACTCAAACTTCC 	6
-----------------------------------------------------------------GCTGCCGACTCAAACTTCCG 	1
---------------------------------------------------------------------------------------------------------------------AATGTCTGATACGGGAGCTGT 	7
-----------------------------------------------------------------------------------------------------------------------------ATACGGGAGCTGTTCAATCTCCGGC 	1
--------------------------------------------------------------------------------------------------------------------------------CGGGAGCTGTTCAATCTCCGG 	1
---------------------------------------------------------------------------------------------------------------------------------GGGAGCTGTTCAATCTCCGGC 	18
----------------------------------------------------------------------------------------------------------------------------------GGAGCTGTTCAATCTCCGG 	1
----------------------------------------------------------------------------------------------------------------------------------GGAGCTGTTCAATCTCCGGC 	11
---------------------------------------------------------------------------------------------------------------------------------------TGTTCAATCTCCGGCTTAGCATCT 	1
---------------------------------------------------------------------------------------------------------------------------------------TGTTCAATCTCCGGCTTAGCA 	16
-----------------------------------------------------------------------------------------------------------------------------------------TTCAATCTCCGGCTTAGCATC 	1
------------------------------------------------------------------------------------------------------------------------------------------TCAATCTCCGGCTTAGCATC 	192
------------------------------------------------------------------------------------------------------------------------------------------TCAATCTCCGGCTTAGCATCT 	382
------------------------------------------------------------------------------------------------------------------------------------------TCAATCTCCGGCTTAGCAT 	6
-------------------------------------------------------------------------------------------------------------------------------------------CAATCTCCGGCTTAGCATCT 	1
--------------------------------------------------------------------------------------------------------------------------------------------AATCTCCGGCTTAGCATCT 	6
------------------------------------------------------------------------------------------------------------------------------------------------TCCGGCTTAGCATCTCTTGGA 	5
-----------------------------------------------------------------------------------------------------------------------------------------------------CTTAGCATCTCTTGGACTGA 	1
------------------------------------------------------------------------------------------------------------------------------------------------------TTAGCATCTCTTGGACTGAA 	7
------------------------------------------------------------------------------------------------------------------------------------------------------TTAGCATCTCTTGGACTGA 	1
------------------------------------------------------------------------------------------------------------------------------------------------------TTAGCATCTCTTGGACTGAAG 	648
-------------------------------------------------------------------------------------------------------------------------------------------------------TAGCATCTCTTGGACTGAAG 	3
---------------------------------------------------------------------------------------------------------------------------------------------------------GCATCTCTTGGACTGAAGGGAGCTC 	1
---------------------------------------------------------------------------------------------------------------------------------------------------------GCATCTCTTGGACTGAAGGGAGCTCC 	3
-----------------------------------------------------------------------------------------------------------------------------------------------------------ATCTCTTGGACTGAAGGGAGC 	3
-----------------------------------------------------------------------------------------------------------------------------------------------------------ATCTCTTGGACTGAAGGGAGCTC 	1
------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCTTGGACTGAAGGGAGC 	2
------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCTTGGACTGAAGGGAGCT 	16
------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCTTGGACTGAAGGGAGCTC 	1
-------------------------------------------------------------------------------------------------------------------------------------------------------------CTCTTGGACTGAAGGGAGCTC 	1
-------------------------------------------------------------------------------------------------------------------------------------------------------------CTCTTGGACTGAAGGGAGCT 	2
--------------------------------------------------------------------------------------------------------------------------------------------------------------TCTTGGACTGAAGGGAGCTCCC 	26
--------------------------------------------------------------------------------------------------------------------------------------------------------------TCTTGGACTGAAGGGAGCT 	1
--------------------------------------------------------------------------------------------------------------------------------------------------------------TCTTGGACTGAAGGGAGCTCC 	43
--------------------------------------------------------------------------------------------------------------------------------------------------------------TCTTGGACTGAAGGGAGCTC 	2
---------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGGACTGAAGGGAGCTC 	88
---------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGGACTGAAGGGAGCTCC 	4487
---------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGGACTGAAGGGAGCTCCC 	18658
---------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGGACTGAAGGGAGCTCCCCG 	1
---------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGGACTGAAGGGAGCTCCCC 	26
----------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCCC 	3
----------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCC 	394
----------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCC 	130
-----------------------------------------------------------------------------------------------------------------------------------------------------------------TGGACTGAAGGGAGCTCCC 	22
--------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTGAAGGGAGCTCCCCGCTGT 	1
---------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGAAGGGAGCTCCCCGCTGT 	2
----------------------------------------------------------------------------------------------------------------------------------------------------------------------TGAAGGGAGCTCCCCGCTGT 	2

Overlaps with: MNEST039483 MNEST051387 MNEST051388 MNEST051389
Overlaps with miRBase pre-miRNAs: ppt-MIR319d
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
17	Physcomitrella patens	GSM313214	CTTGGACTGAAGGGAGCTCCC	GAGCTCCTTCCGGTTCAATAG	down	2	0

Secondary structure

GACTAGCCGTGGGAGCTCCTTCCGGTTCAATAGTGGCTGATGTGAGGTTGCACTGCTGCCGATTCAAACTTCCGGCTTCCCTTTCTTAACACGACAGGGAATCCGAATGTCTGATGCGGGAGCTGTGCGGTCTTCAACTTTAGCGCCTCTTGGACTGAAGGGAGCTCCCAAGTCTTCG
------------GAGCTCCTTCCGGTTCAATA 	5
------------GAGCTCCTTCCGGTTCAATAG 	16
------------GAGCTCCTTCCGGTTCAAT 	3
------------GAGCTCCTTCCGGTTCAATAGT 	1
-------------AGCTCCTTCCGGTTCAATAG 	1
---------------------------------TGGCTGATGTGAGGTTGCAC 	6
---------------------------------------------------------------------------------------------------------AATGTCTGATGCGGGAGCTGT 	1
---------------------------------------------------------------------------------------------------------AATGTCTGATGCGGGAGCTG 	1
------------------------------------------------------------------------------------------------------------------------------GCGGTCTTCAACTTTAGCGCC 	2
------------------------------------------------------------------------------------------------------------------------------GCGGTCTTCAACTTTAGCGCCT 	2
------------------------------------------------------------------------------------------------------------------------------GCGGTCTTCAACTTTAGCGC 	1
-------------------------------------------------------------------------------------------------------------------------------------------------CCTCTTGGACTGAAGGGAGCT 	1
--------------------------------------------------------------------------------------------------------------------------------------------------CTCTTGGACTGAAGGGAGCTC 	1
--------------------------------------------------------------------------------------------------------------------------------------------------CTCTTGGACTGAAGGGAGCT 	2
---------------------------------------------------------------------------------------------------------------------------------------------------TCTTGGACTGAAGGGAGCTCCC 	26
---------------------------------------------------------------------------------------------------------------------------------------------------TCTTGGACTGAAGGGAGCT 	1
---------------------------------------------------------------------------------------------------------------------------------------------------TCTTGGACTGAAGGGAGCTCC 	43
---------------------------------------------------------------------------------------------------------------------------------------------------TCTTGGACTGAAGGGAGCTC 	2
----------------------------------------------------------------------------------------------------------------------------------------------------CTTGGACTGAAGGGAGCTC 	88
----------------------------------------------------------------------------------------------------------------------------------------------------CTTGGACTGAAGGGAGCTCC 	4487
----------------------------------------------------------------------------------------------------------------------------------------------------CTTGGACTGAAGGGAGCTCCC 	18658
----------------------------------------------------------------------------------------------------------------------------------------------------CTTGGACTGAAGGGAGCTCCCA 	16
-----------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCCA 	3
-----------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCC 	394
-----------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCC 	130
------------------------------------------------------------------------------------------------------------------------------------------------------TGGACTGAAGGGAGCTCCC 	22
------------------------------------------------------------------------------------------------------------------------------------------------------TGGACTGAAGGGAGCTCCCA 	2
--------------------------------------------------------------------------------------------------------------------------------------------------------GACTGAAGGGAGCTCCCAAGT 	1

Overlaps with: MNEST039484 MNEST051390
Overlaps with miRBase pre-miRNAs: ppt-MIR319e
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
18	Physcomitrella patens	GSM313214	CTTGGACTGAAGGGAGCTCCC	GAGCTTCCTTCGGTTCAATAG	down	1	0

Secondary structure

TCACTGGCTGTGGGAGCTTCCTTCGGTTCAATAGTGGCTGATATGAGGTTGCACTGCTGCCGACTCAAACTTCCGGCTTCCCTCTCTTAGAATGGCAGGGAATCCGAATGTCTGATGCGGGAGCTGAGCGGTCTTCAACTCAGCTTCTCTTGGACTGAAGGGAGCTCCCATGTCTTTGT
------------GGAGCTTCCTTCGGTTCAATA 	1
-------------GAGCTTCCTTCGGTTCAATAGTG 	1
-------------GAGCTTCCTTCGGTTCAATA 	309
-------------GAGCTTCCTTCGGTTCAATAGT 	395
-------------GAGCTTCCTTCGGTTCAATAG 	3851
-------------GAGCTTCCTTCGGTTCAAT 	23
--------------AGCTTCCTTCGGTTCAATAG 	614
--------------AGCTTCCTTCGGTTCAATAGT 	85
--------------AGCTTCCTTCGGTTCAATA 	77
---------------GCTTCCTTCGGTTCAATAGTGG 	1
---------------GCTTCCTTCGGTTCAATAG 	1
---------------GCTTCCTTCGGTTCAATAGT 	2
----------------CTTCCTTCGGTTCAATAGTGG 	1
-------------------CCTTCGGTTCAATAGTGGCTG 	2
--------------------CTTCGGTTCAATAGTGGCTGA 	1
---------------------TTCGGTTCAATAGTGGCTGA 	4
---------------------------TCAATAGTGGCTGATATGAG 	1
---------------------------------GTGGCTGATATGAGGTTGCAC 	5
---------------------------------GTGGCTGATATGAGGTTGCA 	1
----------------------------------TGGCTGATATGAGGTTGCACTG 	1
----------------------------------TGGCTGATATGAGGTTGCAC 	2167
----------------------------------TGGCTGATATGAGGTTGCA 	74
----------------------------------TGGCTGATATGAGGTTGCACT 	9
-----------------------------------GGCTGATATGAGGTTGCAC 	15
------------------------------------------------------TGCTGCCGACTCAAACTTCCG 	2
------------------------------------------------------TGCTGCCGACTCAAACTTCC 	6
-------------------------------------------------------GCTGCCGACTCAAACTTCCG 	1
----------------------------------------------------------------------------------TCTCTTAGAATGGCAGGGAATC 	1
-------------------------------------------------------------------------------------CTTAGAATGGCAGGGAATCC 	1
--------------------------------------------------------------------------------------TTAGAATGGCAGGGAATCC 	1
----------------------------------------------------------------------------------------------------------AATGTCTGATGCGGGAGCTGA 	67
----------------------------------------------------------------------------------------------------------AATGTCTGATGCGGGAGCTG 	1
----------------------------------------------------------------------------------------------------------------TGATGCGGGAGCTGAGCGGTC 	1
----------------------------------------------------------------------------------------------------------------------------TGAGCGGTCTTCAACTCAGC 	1
-------------------------------------------------------------------------------------------------------------------------------GCGGTCTTCAACTCAGCTTC 	85
-------------------------------------------------------------------------------------------------------------------------------GCGGTCTTCAACTCAGCTTCT 	312
-------------------------------------------------------------------------------------------------------------------------------GCGGTCTTCAACTCAGCTT 	6
---------------------------------------------------------------------------------------------------------------------------------GGTCTTCAACTCAGCTTCT 	3
-------------------------------------------------------------------------------------------------------------------------------------TTCAACTCAGCTTCTCTTGGAC 	2
-------------------------------------------------------------------------------------------------------------------------------------------------TCTCTTGGACTGAAGGGAGC 	2
-------------------------------------------------------------------------------------------------------------------------------------------------TCTCTTGGACTGAAGGGAGCT 	16
-------------------------------------------------------------------------------------------------------------------------------------------------TCTCTTGGACTGAAGGGAGCTC 	1
--------------------------------------------------------------------------------------------------------------------------------------------------CTCTTGGACTGAAGGGAGCTC 	1
--------------------------------------------------------------------------------------------------------------------------------------------------CTCTTGGACTGAAGGGAGCT 	2
---------------------------------------------------------------------------------------------------------------------------------------------------TCTTGGACTGAAGGGAGCTCCC 	26
---------------------------------------------------------------------------------------------------------------------------------------------------TCTTGGACTGAAGGGAGCT 	1
---------------------------------------------------------------------------------------------------------------------------------------------------TCTTGGACTGAAGGGAGCTCC 	43
---------------------------------------------------------------------------------------------------------------------------------------------------TCTTGGACTGAAGGGAGCTC 	2
----------------------------------------------------------------------------------------------------------------------------------------------------CTTGGACTGAAGGGAGCTC 	88
----------------------------------------------------------------------------------------------------------------------------------------------------CTTGGACTGAAGGGAGCTCC 	4487
----------------------------------------------------------------------------------------------------------------------------------------------------CTTGGACTGAAGGGAGCTCCC 	18658
----------------------------------------------------------------------------------------------------------------------------------------------------CTTGGACTGAAGGGAGCTCCCA 	16
-----------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCCA 	3
-----------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCC 	394
-----------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCC 	130
------------------------------------------------------------------------------------------------------------------------------------------------------TGGACTGAAGGGAGCTCCC 	22
------------------------------------------------------------------------------------------------------------------------------------------------------TGGACTGAAGGGAGCTCCCA 	2
------------------------------------------------------------------------------------------------------------------------------------------------------TGGACTGAAGGGAGCTCCCAT 	1

Overlaps with: MNEST039482 MNEST051386
Overlaps with miRBase pre-miRNAs: ppt-MIR319c
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
19	Physcomitrella patens	GSM313217	CTTGGACTGAAGGGAGCTCCC	GAGCTCCTTCCGGTTCAATAG	down	2	0

Secondary structure

GACTAGCCGTGGGAGCTCCTTCCGGTTCAATAGTGGCTGATGTGAGGTTGCACTGCTGCCGATTCAAACTTCCGGCTTCCCTTTCTTAACACGACAGGGAATCCGAATGTCTGATGCGGGAGCTGTGCGGTCTTCAACTTTAGCGCCTCTTGGACTGAAGGGAGCTCCCAAGTCTTCG
-----------GGAGCTCCTTCCGGTTCAATA 	1
------------GAGCTCCTTCCGGTTCAAT 	15
------------GAGCTCCTTCCGGTTCAATA 	50
------------GAGCTCCTTCCGGTTCAATAGT 	6
------------GAGCTCCTTCCGGTTCAATAG 	46
-------------AGCTCCTTCCGGTTCAATAGT 	1
-------------AGCTCCTTCCGGTTCAATAG 	1
---------------------------------TGGCTGATGTGAGGTTGCAC 	2
---------------------------------------------------------------------------------------------------------AATGTCTGATGCGGGAGCTGT 	2
---------------------------------------------------------------------------------------------------------AATGTCTGATGCGGGAGCTG 	1
------------------------------------------------------------------------------------------------------------------------------GCGGTCTTCAACTTTAGCGCC 	1
------------------------------------------------------------------------------------------------------------------------------GCGGTCTTCAACTTTAGCGCCT 	2
-------------------------------------------------------------------------------------------------------------------------------------------------CCTCTTGGACTGAAGGGAGCT 	1
--------------------------------------------------------------------------------------------------------------------------------------------------CTCTTGGACTGAAGGGAGCT 	2
--------------------------------------------------------------------------------------------------------------------------------------------------CTCTTGGACTGAAGGGAGCTCCC 	1
--------------------------------------------------------------------------------------------------------------------------------------------------CTCTTGGACTGAAGGGAGCTC 	1
---------------------------------------------------------------------------------------------------------------------------------------------------TCTTGGACTGAAGGGAGCTCCC 	2
---------------------------------------------------------------------------------------------------------------------------------------------------TCTTGGACTGAAGGGAGCTCC 	9
---------------------------------------------------------------------------------------------------------------------------------------------------TCTTGGACTGAAGGGAGCTC 	1
----------------------------------------------------------------------------------------------------------------------------------------------------CTTGGACTGAAGGGAGCTCCC 	1812
----------------------------------------------------------------------------------------------------------------------------------------------------CTTGGACTGAAGGGAGCTCCCA 	40
----------------------------------------------------------------------------------------------------------------------------------------------------CTTGGACTGAAGGGAGCTC 	14
----------------------------------------------------------------------------------------------------------------------------------------------------CTTGGACTGAAGGGAGCTCC 	453
-----------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCC 	14
-----------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCCA 	1
-----------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCC 	53
------------------------------------------------------------------------------------------------------------------------------------------------------TGGACTGAAGGGAGCTCCC 	6
------------------------------------------------------------------------------------------------------------------------------------------------------TGGACTGAAGGGAGCTCCCA 	1

Overlaps with: MNEST039484 MNEST051390
Overlaps with miRBase pre-miRNAs: ppt-MIR319e
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
20	Physcomitrella patens	GSM313217	CTTGGACTGAAGGGAGCTCCC	GAGCTTCCTTCGGTTCAATAG	down	1	0

Secondary structure

TCACTGGCTGTGGGAGCTTCCTTCGGTTCAATAGTGGCTGATATGAGGTTGCACTGCTGCCGACTCAAACTTCCGGCTTCCCTCTCTTAGAATGGCAGGGAATCCGAATGTCTGATGCGGGAGCTGAGCGGTCTTCAACTCAGCTTCTCTTGGACTGAAGGGAGCTCCCATGTCTTTGT
-------------GAGCTTCCTTCGGTTCAATAG 	751
-------------GAGCTTCCTTCGGTTCAATA 	162
-------------GAGCTTCCTTCGGTTCAAT 	62
-------------GAGCTTCCTTCGGTTCAATAGT 	88
--------------AGCTTCCTTCGGTTCAATA 	11
--------------AGCTTCCTTCGGTTCAATAG 	279
--------------AGCTTCCTTCGGTTCAATAGT 	21
---------------GCTTCCTTCGGTTCAATAG 	1
----------------CTTCCTTCGGTTCAATAGT 	1
----------------CTTCCTTCGGTTCAATAGTGG 	1
--------------------CTTCGGTTCAATAGTGGCTGA 	6
---------------------TTCGGTTCAATAGTGGCTGA 	4
---------------------------------GTGGCTGATATGAGGTTGCAC 	2
---------------------------------GTGGCTGATATGAGGTTGCA 	1
----------------------------------TGGCTGATATGAGGTTGCA 	17
----------------------------------TGGCTGATATGAGGTTGCACT 	3
----------------------------------TGGCTGATATGAGGTTGCAC 	643
-----------------------------------GGCTGATATGAGGTTGCAC 	2
------------------------------------------------TTGCACTGCTGCCGACTCAAAC 	1
------------------------------------------------TTGCACTGCTGCCGACTCAAA 	1
------------------------------------------------------TGCTGCCGACTCAAACTTCCG 	4
---------------------------------------------------------TGCCGACTCAAACTTCCGGCT 	1
---------------------------------------------------------------------------GCTTCCCTCTCTTAGAATGGCAGGGA 	5
----------------------------------------------------------------------------CTTCCCTCTCTTAGAATGGCAGGGA 	1
-----------------------------------------------------------------------------TTCCCTCTCTTAGAATGGCAGG 	1
----------------------------------------------------------------------------------------------------------AATGTCTGATGCGGGAGCTGA 	53
----------------------------------------------------------------------------------------------------------AATGTCTGATGCGGGAGCTG 	1
-----------------------------------------------------------------------------------------------------------ATGTCTGATGCGGGAGCTGA 	2
----------------------------------------------------------------------------------------------------------------------------TGAGCGGTCTTCAACTCAGCTTCT 	1
-----------------------------------------------------------------------------------------------------------------------------GAGCGGTCTTCAACTCAGCTT 	1
-------------------------------------------------------------------------------------------------------------------------------GCGGTCTTCAACTCAGCTTCT 	219
-------------------------------------------------------------------------------------------------------------------------------GCGGTCTTCAACTCAGCTT 	5
-------------------------------------------------------------------------------------------------------------------------------GCGGTCTTCAACTCAGCTTC 	48
-------------------------------------------------------------------------------------------------------------------------------GCGGTCTTCAACTCAGCTTCTC 	1
---------------------------------------------------------------------------------------------------------------------------------GGTCTTCAACTCAGCTTCT 	1
---------------------------------------------------------------------------------------------------------------------------------------------AGCTTCTCTTGGACTGAAGGG 	2
---------------------------------------------------------------------------------------------------------------------------------------------AGCTTCTCTTGGACTGAAGGGAGC 	1
---------------------------------------------------------------------------------------------------------------------------------------------AGCTTCTCTTGGACTGAAGG 	1
----------------------------------------------------------------------------------------------------------------------------------------------GCTTCTCTTGGACTGAAGGGAGCTC 	1
----------------------------------------------------------------------------------------------------------------------------------------------GCTTCTCTTGGACTGAAGGGAGC 	1
------------------------------------------------------------------------------------------------------------------------------------------------TTCTCTTGGACTGAAGGGAGC 	1
-------------------------------------------------------------------------------------------------------------------------------------------------TCTCTTGGACTGAAGGGAGCTCC 	1
-------------------------------------------------------------------------------------------------------------------------------------------------TCTCTTGGACTGAAGGGAGC 	7
-------------------------------------------------------------------------------------------------------------------------------------------------TCTCTTGGACTGAAGGGAGCT 	16
-------------------------------------------------------------------------------------------------------------------------------------------------TCTCTTGGACTGAAGGGAG 	2
--------------------------------------------------------------------------------------------------------------------------------------------------CTCTTGGACTGAAGGGAGCT 	2
--------------------------------------------------------------------------------------------------------------------------------------------------CTCTTGGACTGAAGGGAGCTCCC 	1
--------------------------------------------------------------------------------------------------------------------------------------------------CTCTTGGACTGAAGGGAGCTC 	1
---------------------------------------------------------------------------------------------------------------------------------------------------TCTTGGACTGAAGGGAGCTCCC 	2
---------------------------------------------------------------------------------------------------------------------------------------------------TCTTGGACTGAAGGGAGCTCC 	9
---------------------------------------------------------------------------------------------------------------------------------------------------TCTTGGACTGAAGGGAGCTC 	1
----------------------------------------------------------------------------------------------------------------------------------------------------CTTGGACTGAAGGGAGCTCCC 	1812
----------------------------------------------------------------------------------------------------------------------------------------------------CTTGGACTGAAGGGAGCTCCCA 	40
----------------------------------------------------------------------------------------------------------------------------------------------------CTTGGACTGAAGGGAGCTC 	14
----------------------------------------------------------------------------------------------------------------------------------------------------CTTGGACTGAAGGGAGCTCC 	453
-----------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCC 	14
-----------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCCA 	1
-----------------------------------------------------------------------------------------------------------------------------------------------------TTGGACTGAAGGGAGCTCCC 	53
------------------------------------------------------------------------------------------------------------------------------------------------------TGGACTGAAGGGAGCTCCC 	6
------------------------------------------------------------------------------------------------------------------------------------------------------TGGACTGAAGGGAGCTCCCA 	1

Overlaps with: MNEST039482 MNEST051386
Overlaps with miRBase pre-miRNAs: ppt-MIR319c
HuntMi prediction: true miRNA