miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: CTTGGCACTCGCGAACACCGCG

selected species: Caenorhabditis elegans



7 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Caenorhabditis elegans GSM427344-5691 CTTGGCACTCGCGAACACCGCG CGGCGTTAGCTCTGTGTCAAACC up 5 1


Secondary structure

AAAAAAAGTCCCTTCAGCCGGCTTGGCACTCGCGAACACCGCGATTTCACTTATAACTCGCGGCGTTAGCTCTGTGTCAAACCGGCGTAGCTGATGACTCA
---------------------CTTGGCACTCGCGAACACCGCG 	48
---------------------CTTGGCACTCGCGAACACCGC 	3
------------------------------------------------------------CGGCGTTAGCTCTGTGTCAAACC 	4

Overlaps with: MNEST038394
Overlaps with miRBase pre-miRNAs: cel-mir-790
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Caenorhabditis elegans GSM427332-5684 CTTGGCACTCGCGAACACCGCG CGGCGTTAGCTCTGTGTCAAACC up 5 1


Secondary structure

AAAAAAAGTCCCTTCAGCCGGCTTGGCACTCGCGAACACCGCGATTTCACTTATAACTCGCGGCGTTAGCTCTGTGTCAAACCGGCGTAGCTGATGACTCA
---------------------CTTGGCACTCGCGAACACCGCG 	91
---------------------CTTGGCACTCGCGAACACCGCGA 	2
---------------------CTTGGCACTCGCGAACACCGC 	1
------------------------------------------------------------CGGCGTTAGCTCTGTGTCAAACC 	3

Overlaps with: MNEST038394
Overlaps with miRBase pre-miRNAs: cel-mir-790
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Caenorhabditis elegans GSM378784 CTTGGCACTCGCGAACACCGCG CGGCGTTAGCTCTGTGTCAAACC up 5 1


Secondary structure

AAAAAAAGTCCCTTCAGCCGGCTTGGCACTCGCGAACACCGCGATTTCACTTATAACTCGCGGCGTTAGCTCTGTGTCAAACCGGCGTAGCTGATGACTCA
---------------------CTTGGCACTCGCGAACACCGCGAT 	1
---------------------CTTGGCACTCGCGAACACCGCG 	27
---------------------CTTGGCACTCGCGAACACCGC 	2
-----------------------------------------------------------GCGGCGTTAGCTCTGTGTC 	1

Overlaps with: MNEST038394
Overlaps with miRBase pre-miRNAs: cel-mir-790
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Caenorhabditis elegans GSM427346-5695 CTTGGCACTCGCGAACACCGCG CGGCGTTAGCTCTGTGTCAAACC up 5 1


Secondary structure

AAAAAAAGTCCCTTCAGCCGGCTTGGCACTCGCGAACACCGCGATTTCACTTATAACTCGCGGCGTTAGCTCTGTGTCAAACCGGCGTAGCTGATGACTCA
---------------------CTTGGCACTCGCGAACACCGCG 	50
---------------------CTTGGCACTCGCGAACACCGCGA 	3
---------------------CTTGGCACTCGCGAACACCGC 	3

Overlaps with: MNEST038394
Overlaps with miRBase pre-miRNAs: cel-mir-790
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Caenorhabditis elegans GSM427345-5693 CTTGGCACTCGCGAACACCGCG CGGCGTTAGCTCTGTGTCAAACC up 5 1


Secondary structure

AAAAAAAGTCCCTTCAGCCGGCTTGGCACTCGCGAACACCGCGATTTCACTTATAACTCGCGGCGTTAGCTCTGTGTCAAACCGGCGTAGCTGATGACTCA
---------------------CTTGGCACTCGCGAACACCGCG 	10
-----------------------------------------------------------GCGGCGTTAGCTCTGTGTCAAAC 	1

Overlaps with: MNEST038394
Overlaps with miRBase pre-miRNAs: cel-mir-790
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Caenorhabditis elegans GSM297751-9445 CTTGGCACTCGCGAACACCGCG CGGCGTTAGCTCTGTGTCAAACC up 5 1


Secondary structure

AAAAAAAGTCCCTTCAGCCGGCTTGGCACTCGCGAACACCGCGATTTCACTTATAACTCGCGGCGTTAGCTCTGTGTCAAACCGGCGTAGCTGATGACTCA
---------------------CTTGGCACTCGCGAACACC 	1
---------------------CTTGGCACTCGCGAACACCGCG 	68
---------------------CTTGGCACTCGCGAACACCGC 	12
---------------------CTTGGCACTCGCGAACACCG 	2
---------------------CTTGGCACTCGCGAACACCGCGA 	1

Overlaps with: MNEST038394
Overlaps with miRBase pre-miRNAs: cel-mir-790
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
7 Caenorhabditis elegans GSM297752-9446 CTTGGCACTCGCGAACACCGCG CGGCGTTAGCTCTGTGTCAAACC up 5 1


Secondary structure

AAAAAAAGTCCCTTCAGCCGGCTTGGCACTCGCGAACACCGCGATTTCACTTATAACTCGCGGCGTTAGCTCTGTGTCAAACCGGCGTAGCTGATGACTCA
---------------------CTTGGCACTCGCGAACACCG 	2
---------------------CTTGGCACTCGCGAACACCGCG 	46
---------------------CTTGGCACTCGCGAACACCGC 	7
---------------------CTTGGCACTCGCGAACACCGCGA 	2

Overlaps with: MNEST038394
Overlaps with miRBase pre-miRNAs: cel-mir-790
HuntMi prediction: true miRNA