miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: CTTGGTACATCTTTGAGTGAG

selected species: Mus musculus



2 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Mus musculus GSM539877-5198 CTTGGTACATCTTTGAGTGAG CACTTGAGGATGTACCACCCA down 3 0


Secondary structure

ACTCATGTAGTGTGTGATGTATCACTTGAGGATGTACCACCCATTTAACAGGAAACATGCTTGGTACATCTTTGAGTGAGATAACACACAACAGCTACC
----------------------CACTTGAGGATGTACCACCCA 	1
---------------------------------------------------------TGCTTGGTACATCTTTGAGTGA 	1
-----------------------------------------------------------CTTGGTACATCTTTGAGTG 	3
-----------------------------------------------------------CTTGGTACATCTTTGAGTGAG 	95
-----------------------------------------------------------CTTGGTACATCTTTGAGTGAGA 	4
-----------------------------------------------------------CTTGGTACATCTTTGAGTGA 	17

Overlaps with: MNEST032212
Overlaps with miRBase pre-miRNAs: mmu-mir-547
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Mus musculus GSM539878 CTTGGTACATCTTTGAGTGAG CACTTGAGGATGTACCACCCA down 3 0


Secondary structure

ACTCATGTAGTGTGTGATGTATCACTTGAGGATGTACCACCCATTTAACAGGAAACATGCTTGGTACATCTTTGAGTGAGATAACACACAACAGCTACC
----------------------CACTTGAGGATGTACCACCCA 	1
-----------------------------------------------------------CTTGGTACATCTTTGAGTGA 	4
-----------------------------------------------------------CTTGGTACATCTTTGAGTGAG 	18

Overlaps with: MNEST032212
Overlaps with miRBase pre-miRNAs: mmu-mir-547
HuntMi prediction: true miRNA