miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: CTTTCAGTCGGATGTTTACAGC

selected species: Sus scrofa



4 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Sus scrofa GSM636844 CTTTCAGTCGGATGTTTACAGC TGTAAACATCCTTGACTGGAAGCT down 1 2


Secondary structure

CTCTCCGGGCAGTCTTTGCCACTGTAAACATCCTTGACTGGAAGCTGTGAGGCGTTCCCAGGAGCTTTCAGTCGGATGTTTACAGCGGCAGGCTGCCACGGTCGT
-TCTCCGGGCAGTCTTTGCCAC 	1
---------------------CTGTAAACATCCTTGACTGGAAG 	1
---------------------CTGTAAACATCCTTGACTGG 	2
----------------------TGTAAACATCCTTGACTGGAAGCT 	614
----------------------TGTAAACATCCTTGACTGGAA 	193
----------------------TGTAAACATCCTTGACTGGA 	161
----------------------TGTAAACATCCTTGACTGGAAGC 	8304
----------------------TGTAAACATCCTTGACTGGAAG 	860
----------------------TGTAAACATCCTTGACTGG 	943
-----------------------GTAAACATCCTTGACTGGAAGCTGT 	3
-----------------------GTAAACATCCTTGACTGGAAGC 	285
-----------------------GTAAACATCCTTGACTGGAAGCTG 	2
-----------------------GTAAACATCCTTGACTGGAAGCT 	129
-----------------------GTAAACATCCTTGACTGGA 	5
-----------------------GTAAACATCCTTGACTGGAA 	4
-----------------------GTAAACATCCTTGACTGGAAG 	16
------------------------TAAACATCCTTGACTGGAAGC 	4
------------------------TAAACATCCTTGACTGGAAGCT 	6
-------------------------AAACATCCTTGACTGGAAGC 	2
--------------------------AACATCCTTGACTGGAAGC 	1
---------------------------------------------------------------GCTTTCAGTCGGATGTTTACAG 	1
---------------------------------------------------------------GCTTTCAGTCGGATGTTTACAGC 	1
----------------------------------------------------------------CTTTCAGTCGGATGTTTACAGC 	13906
----------------------------------------------------------------CTTTCAGTCGGATGTTTACA 	261
----------------------------------------------------------------CTTTCAGTCGGATGTTTAC 	259
----------------------------------------------------------------CTTTCAGTCGGATGTTTACAGCG 	6
----------------------------------------------------------------CTTTCAGTCGGATGTTTACAG 	772
-----------------------------------------------------------------TTTCAGTCGGATGTTTACAGCG 	1
-----------------------------------------------------------------TTTCAGTCGGATGTTTACAGC 	883
-----------------------------------------------------------------TTTCAGTCGGATGTTTACA 	16
-----------------------------------------------------------------TTTCAGTCGGATGTTTACAG 	52
------------------------------------------------------------------TTCAGTCGGATGTTTACAGC 	2
-------------------------------------------------------------------TCAGTCGGATGTTTACAGCGG 	1
-------------------------------------------------------------------TCAGTCGGATGTTTACAGC 	9
-------------------------------------------------------------------TCAGTCGGATGTTTACAGCG 	1


Overlaps with: MNEST033945 MNEST033946
Overlaps with miRBase pre-miRNAs: ssc-mir-30e
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Sus scrofa GSM636847 CTTTCAGTCGGATGTTTACAGC TGTAAACATCCTTGACTGGAAGCT down 1 2


Secondary structure

CTCTCCGGGCAGTCTTTGCCACTGTAAACATCCTTGACTGGAAGCTGTGAGGCGTTCCCAGGAGCTTTCAGTCGGATGTTTACAGCGGCAGGCTGCCACGGTCGT
---------------------CTGTAAACATCCTTGACTGGAAGC 	3
---------------------CTGTAAACATCCTTGACTGG 	1
---------------------CTGTAAACATCCTTGACTGGAAG 	1
----------------------TGTAAACATCCTTGACTGGAAGCT 	701
----------------------TGTAAACATCCTTGACTGGAA 	158
----------------------TGTAAACATCCTTGACTGGA 	118
----------------------TGTAAACATCCTTGACTGGAAGC 	10226
----------------------TGTAAACATCCTTGACTGGAAG 	749
----------------------TGTAAACATCCTTGACTGG 	723
-----------------------GTAAACATCCTTGACTGGAAGCTG 	4
-----------------------GTAAACATCCTTGACTGGAA 	5
-----------------------GTAAACATCCTTGACTGGAAGC 	407
-----------------------GTAAACATCCTTGACTGGAAGCT 	151
-----------------------GTAAACATCCTTGACTGGAAG 	11
------------------------TAAACATCCTTGACTGGAAGC 	6
------------------------TAAACATCCTTGACTGGAA 	1
------------------------TAAACATCCTTGACTGGAAGCT 	6
------------------------TAAACATCCTTGACTGGAAG 	1
-------------------------AAACATCCTTGACTGGAAG 	2
---------------------------ACATCCTTGACTGGAAGCT 	1
---------------------------------------------------------------GCTTTCAGTCGGATGTTTACAG 	1
---------------------------------------------------------------GCTTTCAGTCGGATGTTTACA 	1
---------------------------------------------------------------GCTTTCAGTCGGATGTTTAC 	1
---------------------------------------------------------------GCTTTCAGTCGGATGTTTACAGC 	5
----------------------------------------------------------------CTTTCAGTCGGATGTTTAC 	236
----------------------------------------------------------------CTTTCAGTCGGATGTTTACAGC 	18104
----------------------------------------------------------------CTTTCAGTCGGATGTTTACA 	221
----------------------------------------------------------------CTTTCAGTCGGATGTTTACAGCG 	15
----------------------------------------------------------------CTTTCAGTCGGATGTTTACAG 	973
-----------------------------------------------------------------TTTCAGTCGGATGTTTACAGCG 	2
-----------------------------------------------------------------TTTCAGTCGGATGTTTACAGC 	930
-----------------------------------------------------------------TTTCAGTCGGATGTTTACA 	16
-----------------------------------------------------------------TTTCAGTCGGATGTTTACAG 	50
------------------------------------------------------------------TTCAGTCGGATGTTTACAGC 	4
------------------------------------------------------------------TTCAGTCGGATGTTTACAG 	1
------------------------------------------------------------------TTCAGTCGGATGTTTACAGCGG 	2
-------------------------------------------------------------------TCAGTCGGATGTTTACAGCGGC 	1
-------------------------------------------------------------------TCAGTCGGATGTTTACAGCGG 	1
-------------------------------------------------------------------TCAGTCGGATGTTTACAGC 	9


Overlaps with: MNEST033945 MNEST033946
Overlaps with miRBase pre-miRNAs: ssc-mir-30e
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Sus scrofa GSM636849 CTTTCAGTCGGATGTTTACAGC TGTAAACATCCTTGACTGGAAGCT down 1 2


Secondary structure

CTCTCCGGGCAGTCTTTGCCACTGTAAACATCCTTGACTGGAAGCTGTGAGGCGTTCCCAGGAGCTTTCAGTCGGATGTTTACAGCGGCAGGCTGCCACGGTCGT
----------------------TGTAAACATCCTTGACTGGAAGCT 	275
----------------------TGTAAACATCCTTGACTGGAAGC 	1258
----------------------TGTAAACATCCTTGACTGGAAG 	57
----------------------TGTAAACATCCTTGACTGGAA 	13
----------------------TGTAAACATCCTTGACTGGA 	10
----------------------TGTAAACATCCTTGACTGG 	253
-----------------------GTAAACATCCTTGACTGGAAGCTGT 	5
-----------------------GTAAACATCCTTGACTGGAAGCTG 	4
-----------------------GTAAACATCCTTGACTGGAAGCT 	27
-----------------------GTAAACATCCTTGACTGGAAGC 	33
------------------------TAAACATCCTTGACTGGAAGCTG 	1
------------------------TAAACATCCTTGACTGGAAGC 	1
----------------------------------------------------------------CTTTCAGTCGGATGTTTACAGC 	24016
----------------------------------------------------------------CTTTCAGTCGGATGTTTACA 	222
----------------------------------------------------------------CTTTCAGTCGGATGTTTAC 	181
----------------------------------------------------------------CTTTCAGTCGGATGTTTACAGCG 	3
----------------------------------------------------------------CTTTCAGTCGGATGTTTACAG 	814
-----------------------------------------------------------------TTTCAGTCGGATGTTTACAGCG 	2
-----------------------------------------------------------------TTTCAGTCGGATGTTTACAGC 	599
-----------------------------------------------------------------TTTCAGTCGGATGTTTACAG 	19
-----------------------------------------------------------------TTTCAGTCGGATGTTTACA 	10
------------------------------------------------------------------TTCAGTCGGATGTTTACAGCGG 	1
------------------------------------------------------------------TTCAGTCGGATGTTTACAGC 	15
------------------------------------------------------------------TTCAGTCGGATGTTTACAG 	1
-------------------------------------------------------------------TCAGTCGGATGTTTACAGCGGC 	1
-------------------------------------------------------------------TCAGTCGGATGTTTACAGC 	29
-------------------------------------------------------------------TCAGTCGGATGTTTACAGCGG 	3


Overlaps with: MNEST033945 MNEST033946
Overlaps with miRBase pre-miRNAs: ssc-mir-30e
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Sus scrofa GSM636846 CTTTCAGTCGGATGTTTACAGC TGTAAACATCCTTGACTGGAAGCT down 1 2


Secondary structure

CTCTCCGGGCAGTCTTTGCCACTGTAAACATCCTTGACTGGAAGCTGTGAGGCGTTCCCAGGAGCTTTCAGTCGGATGTTTACAGCGGCAGGCTGCCACGGTCGT
---------------------CTGTAAACATCCTTGACTGGAAGCT 	1
---------------------CTGTAAACATCCTTGACTGGAAG 	1
----------------------TGTAAACATCCTTGACTGGAAGCT 	608
----------------------TGTAAACATCCTTGACTGGAAGC 	2721
----------------------TGTAAACATCCTTGACTGGAAG 	115
----------------------TGTAAACATCCTTGACTGGAA 	25
----------------------TGTAAACATCCTTGACTGGA 	12
----------------------TGTAAACATCCTTGACTGG 	255
-----------------------GTAAACATCCTTGACTGGAAGCTGT 	4
-----------------------GTAAACATCCTTGACTGGAAGCTG 	9
-----------------------GTAAACATCCTTGACTGGAAGCT 	77
-----------------------GTAAACATCCTTGACTGGAAG 	4
-----------------------GTAAACATCCTTGACTGGAAGC 	100
-----------------------GTAAACATCCTTGACTGGAA 	1
-----------------------GTAAACATCCTTGACTGGA 	2
------------------------TAAACATCCTTGACTGGAAGCTG 	2
------------------------TAAACATCCTTGACTGGAAGCTGT 	1
------------------------TAAACATCCTTGACTGGAAGC 	2
---------------------------------------------------------------GCTTTCAGTCGGATGTTTACAG 	2
---------------------------------------------------------------GCTTTCAGTCGGATGTTTAC 	1
----------------------------------------------------------------CTTTCAGTCGGATGTTTACAGC 	23396
----------------------------------------------------------------CTTTCAGTCGGATGTTTACA 	175
----------------------------------------------------------------CTTTCAGTCGGATGTTTAC 	114
----------------------------------------------------------------CTTTCAGTCGGATGTTTACAGCG 	3
----------------------------------------------------------------CTTTCAGTCGGATGTTTACAG 	627
-----------------------------------------------------------------TTTCAGTCGGATGTTTACAGC 	552
-----------------------------------------------------------------TTTCAGTCGGATGTTTACAG 	16
-----------------------------------------------------------------TTTCAGTCGGATGTTTACA 	5
------------------------------------------------------------------TTCAGTCGGATGTTTACAGC 	8
-------------------------------------------------------------------TCAGTCGGATGTTTACAGCGG 	4
-------------------------------------------------------------------TCAGTCGGATGTTTACAGC 	10
-------------------------------------------------------------------TCAGTCGGATGTTTACAGCG 	1


Overlaps with: MNEST033945 MNEST033946
Overlaps with miRBase pre-miRNAs: ssc-mir-30e
HuntMi prediction: true miRNA