miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: CTTTCAGTCGGATGTTTGCAGC

selected species: Sus scrofa



2 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Sus scrofa GSM636849 CTTTCAGTCGGATGTTTGCAGC TGTAAACATCCTCGACTGGAAGCT down 0 2


Secondary structure

GACAGTGAGCGGCTGTAAACATCCTCGACTGGAAGCTGTGAGGCTGAAGACGGGCTTTCAGTCGGATGTTTGCAGCCGCCGACTGC
------------CTGTAAACATCCTCGACTGGAAGCT 	1
------------CTGTAAACATCCTCGACTGGAAGC 	1
-------------TGTAAACATCCTCGACTGGAAGCT 	794
-------------TGTAAACATCCTCGACTGGAAGC 	5554
-------------TGTAAACATCCTCGACTGGAAG 	382
-------------TGTAAACATCCTCGACTGGAA 	45
-------------TGTAAACATCCTCGACTGGA 	68
-------------TGTAAACATCCTCGACTGG 	776
--------------GTAAACATCCTCGACTGGAAGCT 	31
--------------GTAAACATCCTCGACTGGAAGC 	54
--------------GTAAACATCCTCGACTGGAAGCTG 	1
--------------GTAAACATCCTCGACTGGAAG 	2
--------------GTAAACATCCTCGACTGGAA 	1
--------------GTAAACATCCTCGACTGGA 	2
---------------TAAACATCCTCGACTGGAAGC 	7
---------------TAAACATCCTCGACTGGAAGCTGT 	4
---------------TAAACATCCTCGACTGGAAGCTG 	4
---------------TAAACATCCTCGACTGGAAGCT 	7
----------------AAACATCCTCGACTGGAAGCT 	1
------------------------------------------------------CTTTCAGTCGGATGTTTGCAGCC 	6
------------------------------------------------------CTTTCAGTCGGATGTTTGCA 	97
------------------------------------------------------CTTTCAGTCGGATGTTTGCAGC 	13125
------------------------------------------------------CTTTCAGTCGGATGTTTGCAG 	642
------------------------------------------------------CTTTCAGTCGGATGTTTGC 	236
-------------------------------------------------------TTTCAGTCGGATGTTTGCAGCC 	2
-------------------------------------------------------TTTCAGTCGGATGTTTGCAGC 	395
-------------------------------------------------------TTTCAGTCGGATGTTTGCAG 	20
-------------------------------------------------------TTTCAGTCGGATGTTTGCA 	2
--------------------------------------------------------TTCAGTCGGATGTTTGCAGC 	18
---------------------------------------------------------TCAGTCGGATGTTTGCAGC 	10


Overlaps with: MNEST033938 MNEST033939
Overlaps with miRBase pre-miRNAs: ssc-mir-30a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Sus scrofa GSM636846 CTTTCAGTCGGATGTTTGCAGC TGTAAACATCCTCGACTGGAAGCT down 0 2


Secondary structure

GACAGTGAGCGGCTGTAAACATCCTCGACTGGAAGCTGTGAGGCTGAAGACGGGCTTTCAGTCGGATGTTTGCAGCCGCCGACTGC
------------CTGTAAACATCCTCGACTGGAAGC 	5
-------------TGTAAACATCCTCGACTGGAAGCT 	983
-------------TGTAAACATCCTCGACTGGAAGC 	7652
-------------TGTAAACATCCTCGACTGGAAG 	504
-------------TGTAAACATCCTCGACTGG 	641
-------------TGTAAACATCCTCGACTGGAA 	53
-------------TGTAAACATCCTCGACTGGA 	52
--------------GTAAACATCCTCGACTGGAAGCT 	38
--------------GTAAACATCCTCGACTGGAAGC 	107
--------------GTAAACATCCTCGACTGGAAG 	5
--------------GTAAACATCCTCGACTGGAA 	1
---------------TAAACATCCTCGACTGGAAGC 	9
---------------TAAACATCCTCGACTGGAAGCTG 	2
---------------TAAACATCCTCGACTGGAAGCT 	5
------------------------------------------------------CTTTCAGTCGGATGTTTGCAGCC 	8
------------------------------------------------------CTTTCAGTCGGATGTTTGCAG 	573
------------------------------------------------------CTTTCAGTCGGATGTTTGCA 	58
------------------------------------------------------CTTTCAGTCGGATGTTTGCAGC 	12884
------------------------------------------------------CTTTCAGTCGGATGTTTGC 	187
-------------------------------------------------------TTTCAGTCGGATGTTTGCAGC 	354
-------------------------------------------------------TTTCAGTCGGATGTTTGCAGCC 	2
-------------------------------------------------------TTTCAGTCGGATGTTTGCAG 	24
-------------------------------------------------------TTTCAGTCGGATGTTTGCA 	4
--------------------------------------------------------TTCAGTCGGATGTTTGCAGC 	10
---------------------------------------------------------TCAGTCGGATGTTTGCAGC 	6


Overlaps with: MNEST033938 MNEST033939
Overlaps with miRBase pre-miRNAs: ssc-mir-30a
HuntMi prediction: true miRNA