miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: CTTTTTGCGGTCTGGGCTTGC

selected species: Sus scrofa



10 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Sus scrofa GSM636844 CTTTTTGCGGTCTGGGCTTGC AAGCCCTTACCCCAAAAAGTA up 4 0


Secondary structure

GAGCTGCCGGCCCCTTTGGATCTTTTTGCGGTCTGGGCTTGCTGTTCCTCTCTACAGTAGTCAGGAAGCCCTTACCCCAAAAAGTATCTGCGGGAGGCCTTGTC
---------------------CTTTTTGCGGTCTGGGCTTGC 	11

Overlaps with: MNEST033978
Overlaps with miRBase pre-miRNAs: bta-mir-129-1 ssc-mir-129b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Sus scrofa GSM636844 CTTTTTGCGGTCTGGGCTTGC CGGAAGCCCTTACCCCAAAAAGCA up 3 3


Secondary structure

AAGAAGCCGGAGGACTCTGCCCTTCGTGAATCTTTTTGCGGTCTGGGCTTGCTGTACATAACTCAATAGCCGGAAGCCCTTACCCCAAAAAGCATTCGCGGAGGGCGCACTCTTCGAAAAGA
-------------------------------CTTTTTGCGGTCTGGGCTTGC 	11
-------------------------------------------------------------------------AAGCCCTTACCCCAAAAAGC 	1

Overlaps with: MNEST033977
Overlaps with miRBase pre-miRNAs: mml-mir-129-2 ssc-mir-129a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Sus scrofa GSM636847 CTTTTTGCGGTCTGGGCTTGC AAGCCCTTACCCCAAAAAGTA up 4 0


Secondary structure

GAGCTGCCGGCCCCTTTGGATCTTTTTGCGGTCTGGGCTTGCTGTTCCTCTCTACAGTAGTCAGGAAGCCCTTACCCCAAAAAGTATCTGCGGGAGGCCTTGTC
---------------------CTTTTTGCGGTCTGGGCTTGC 	21
---------------------CTTTTTGCGGTCTGGGCTTG 	1

Overlaps with: MNEST033978
Overlaps with miRBase pre-miRNAs: bta-mir-129-1 ssc-mir-129b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Sus scrofa GSM636847 CTTTTTGCGGTCTGGGCTTGC CGGAAGCCCTTACCCCAAAAAGCA up 3 3


Secondary structure

AAGAAGCCGGAGGACTCTGCCCTTCGTGAATCTTTTTGCGGTCTGGGCTTGCTGTACATAACTCAATAGCCGGAAGCCCTTACCCCAAAAAGCATTCGCGGAGGGCGCACTCTTCGAAAAGA
-------------------------------CTTTTTGCGGTCTGGGCTTGC 	21
-------------------------------CTTTTTGCGGTCTGGGCTTG 	1

Overlaps with: MNEST033977
Overlaps with miRBase pre-miRNAs: mml-mir-129-2 ssc-mir-129a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Sus scrofa GSM636849 CTTTTTGCGGTCTGGGCTTGC AAGCCCTTACCCCAAAAAGTA up 4 0


Secondary structure

GAGCTGCCGGCCCCTTTGGATCTTTTTGCGGTCTGGGCTTGCTGTTCCTCTCTACAGTAGTCAGGAAGCCCTTACCCCAAAAAGTATCTGCGGGAGGCCTTGTC
---------------------CTTTTTGCGGTCTGGGCTTGC 	7
---------------------CTTTTTGCGGTCTGGGCTTGCT 	1

Overlaps with: MNEST033978
Overlaps with miRBase pre-miRNAs: bta-mir-129-1 ssc-mir-129b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Sus scrofa GSM636849 CTTTTTGCGGTCTGGGCTTGC CGGAAGCCCTTACCCCAAAAAGCA up 3 3


Secondary structure

AAGAAGCCGGAGGACTCTGCCCTTCGTGAATCTTTTTGCGGTCTGGGCTTGCTGTACATAACTCAATAGCCGGAAGCCCTTACCCCAAAAAGCATTCGCGGAGGGCGCACTCTTCGAAAAGA
-------------------------------CTTTTTGCGGTCTGGGCTTGC 	7
-------------------------------CTTTTTGCGGTCTGGGCTTGCT 	1

Overlaps with: MNEST033977
Overlaps with miRBase pre-miRNAs: mml-mir-129-2 ssc-mir-129a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
7 Sus scrofa GSM636848 CTTTTTGCGGTCTGGGCTTGC AAGCCCTTACCCCAAAAAGTA up 4 0


Secondary structure

GAGCTGCCGGCCCCTTTGGATCTTTTTGCGGTCTGGGCTTGCTGTTCCTCTCTACAGTAGTCAGGAAGCCCTTACCCCAAAAAGTATCTGCGGGAGGCCTTGTC
---------------------CTTTTTGCGGTCTGGGCTTGC 	30

Overlaps with: MNEST033978
Overlaps with miRBase pre-miRNAs: bta-mir-129-1 ssc-mir-129b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
8 Sus scrofa GSM636848 CTTTTTGCGGTCTGGGCTTGC CGGAAGCCCTTACCCCAAAAAGCA up 3 3


Secondary structure

AAGAAGCCGGAGGACTCTGCCCTTCGTGAATCTTTTTGCGGTCTGGGCTTGCTGTACATAACTCAATAGCCGGAAGCCCTTACCCCAAAAAGCATTCGCGGAGGGCGCACTCTTCGAAAAGA
-------------------------------CTTTTTGCGGTCTGGGCTTGC 	30
-------------------------------------------------------------------------AAGCCCTTACCCCAAAAAGCAT 	1
-------------------------------------------------------------------------AAGCCCTTACCCCAAAAAGC 	4

Overlaps with: MNEST033977
Overlaps with miRBase pre-miRNAs: mml-mir-129-2 ssc-mir-129a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
9 Sus scrofa GSM636846 CTTTTTGCGGTCTGGGCTTGC AAGCCCTTACCCCAAAAAGTA up 4 0


Secondary structure

GAGCTGCCGGCCCCTTTGGATCTTTTTGCGGTCTGGGCTTGCTGTTCCTCTCTACAGTAGTCAGGAAGCCCTTACCCCAAAAAGTATCTGCGGGAGGCCTTGTC
---------------------CTTTTTGCGGTCTGGGCTTGC 	15

Overlaps with: MNEST033978
Overlaps with miRBase pre-miRNAs: bta-mir-129-1 ssc-mir-129b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
10 Sus scrofa GSM636846 CTTTTTGCGGTCTGGGCTTGC CGGAAGCCCTTACCCCAAAAAGCA up 3 3


Secondary structure

AAGAAGCCGGAGGACTCTGCCCTTCGTGAATCTTTTTGCGGTCTGGGCTTGCTGTACATAACTCAATAGCCGGAAGCCCTTACCCCAAAAAGCATTCGCGGAGGGCGCACTCTTCGAAAAGA
-------------------------------CTTTTTGCGGTCTGGGCTTGC 	15

Overlaps with: MNEST033977
Overlaps with miRBase pre-miRNAs: mml-mir-129-2 ssc-mir-129a
HuntMi prediction: true miRNA