miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: GAAGTTGTTCGTGGTGGATTCG

selected species: Homo sapiens



4 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Homo sapiens GSM494810_Normal_2 GAAGTTGTTCGTGGTGGATTCG AATCATTCACGGACAACACTTTT up 3 1


Secondary structure

CTTTTCTGTGGTACTTGAAGAGAAGTTGTTCGTGGTGGATTCGCTTTACTTATGACGAATCATTCACGGACAACACTTTTTTCAGTACCAAATGCTAC
--------------------AGAAGTTGTTCGTGGTGGATTCG 	1
---------------------GAAGTTGTTCGTGGTGGATTCG 	201
---------------------GAAGTTGTTCGTGGTGGATTC 	4
---------------------GAAGTTGTTCGTGGTGGATT 	4
---------------------GAAGTTGTTCGTGGTGGAT 	1
----------------------AAGTTGTTCGTGGTGGATTCG 	32
-----------------------AGTTGTTCGTGGTGGATTCGCT 	3
-----------------------AGTTGTTCGTGGTGGATTCG 	3
---------------------------------------------------------AATCATTCACGGACAACACTTTT 	3
---------------------------------------------------------AATCATTCACGGACAACACTTT 	131
---------------------------------------------------------AATCATTCACGGACAACACTT 	42
---------------------------------------------------------AATCATTCACGGACAACAC 	1
----------------------------------------------------------ATCATTCACGGACAACACTTT 	3

Overlaps with: MNEST026833
Overlaps with miRBase pre-miRNAs: mml-mir-382 bta-mir-3578 ptr-mir-382 ssc-mir-382 eca-mir-382 hsa-mir-382 cfa-mir-382 bta-mir-382
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Homo sapiens GSM494809_Normal_1 GAAGTTGTTCGTGGTGGATTCG AATCATTCACGGACAACACTTTT up 3 1


Secondary structure

CTTTTCTGTGGTACTTGAAGAGAAGTTGTTCGTGGTGGATTCGCTTTACTTATGACGAATCATTCACGGACAACACTTTTTTCAGTACCAAATGCTAC
---------------------GAAGTTGTTCGTGGTGGATTCG 	23
---------------------GAAGTTGTTCGTGGTGGATTC 	8
---------------------GAAGTTGTTCGTGGTGGATT 	6
----------------------AAGTTGTTCGTGGTGGATTCG 	5
---------------------------------------------------------AATCATTCACGGACAACACT 	3
---------------------------------------------------------AATCATTCACGGACAACACTTT 	2
---------------------------------------------------------AATCATTCACGGACAACACTT 	1

Overlaps with: MNEST026833
Overlaps with miRBase pre-miRNAs: mml-mir-382 bta-mir-3578 ptr-mir-382 ssc-mir-382 eca-mir-382 hsa-mir-382 cfa-mir-382 bta-mir-382
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Homo sapiens GSM565978-9532 GAAGTTGTTCGTGGTGGATTCG AATCATTCACGGACAACACTTTT up 3 1


Secondary structure

CTTTTCTGTGGTACTTGAAGAGAAGTTGTTCGTGGTGGATTCGCTTTACTTATGACGAATCATTCACGGACAACACTTTTTTCAGTACCAAATGCTAC
---------------------GAAGTTGTTCGTGGTGGATTCG 	5
---------------------GAAGTTGTTCGTGGTGGATT 	1
----------------------AAGTTGTTCGTGGTGGATTCG 	1
---------------------------------------------------------AATCATTCACGGACAACACTT 	2

Overlaps with: MNEST026833
Overlaps with miRBase pre-miRNAs: mml-mir-382 bta-mir-3578 ptr-mir-382 ssc-mir-382 eca-mir-382 hsa-mir-382 cfa-mir-382 bta-mir-382
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Homo sapiens GSM494812_HL60 GAAGTTGTTCGTGGTGGATTCG AATCATTCACGGACAACACTTTT up 3 1


Secondary structure

CTTTTCTGTGGTACTTGAAGAGAAGTTGTTCGTGGTGGATTCGCTTTACTTATGACGAATCATTCACGGACAACACTTTTTTCAGTACCAAATGCTAC
---------------------GAAGTTGTTCGTGGTGGATTCG 	5
---------------------GAAGTTGTTCGTGGTGGATTC 	1
---------------------GAAGTTGTTCGTGGTGGAT 	1
----------------------AAGTTGTTCGTGGTGGATTCG 	2
---------------------------------------------------------AATCATTCACGGACAACACTTT 	2

Overlaps with: MNEST026833
Overlaps with miRBase pre-miRNAs: mml-mir-382 bta-mir-3578 ptr-mir-382 ssc-mir-382 eca-mir-382 hsa-mir-382 cfa-mir-382 bta-mir-382
HuntMi prediction: true miRNA