miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: GAATCTTGATGATGCTGCAT

selected species: Solanum lycopersicum



6 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Solanum lycopersicum GSM304985 AGAATCTTGATGATGCTGCAT GTGGCATAATCAAGATTCACG down 2 0


Secondary structure

CTTACAGTCGTTGTTTGCATATGTGGCATAATCAAGATTCACGTGAAAAGTTGCAAATTGGTTATATAATTGATGAAATTAATGGCTGGCTATTTGAAACTCACGAGAATCTTGATGATGCTGCATCAGCAATAAACGACTATTG
----------------------GTGGCATAATCAAGATTCA 	2
--------------------------------------------------------------------------------------------------------GAGAATCTTGATGATGCTGCA 	1
---------------------------------------------------------------------------------------------------------AGAATCTTGATGATGCTGCAT 	13
---------------------------------------------------------------------------------------------------------AGAATCTTGATGATGCTGCA 	3
---------------------------------------------------------------------------------------------------------AGAATCTTGATGATGCTGC 	1
----------------------------------------------------------------------------------------------------------GAATCTTGATGATGCTGCAT 	2
----------------------------------------------------------------------------------------------------------GAATCTTGATGATGCTGCA 	1

Overlaps with: MNEST041542 MNEST046620 MNEST054555
Overlaps with miRBase pre-miRNAs: sly-MIR172a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Solanum lycopersicum GSM304985 AGAATCTTGATGATGCTGCAT GCAGCATCATCAAGATTCACA down 2 0


Secondary structure

ATGTACAGTCGTTATTTGCAGCTGCAGCATCATCAAGATTCACATAAAATAGAAATAATATGGAGTAGGAAAAAAAATCAAGTTGCTTCTAAATTCCATATTATTATTTTTTTTCAAAAATGAGAATCTTGATGATGCTGCATCGACAAATTATGACTTTTTC
---------------------CTGCAGCATCATCAAGATTCA 	1
------------------------------------------------------------------------------------------------------------------------TGAGAATCTTGATGATGCTGCA 	1
-------------------------------------------------------------------------------------------------------------------------GAGAATCTTGATGATGCTGCA 	1
--------------------------------------------------------------------------------------------------------------------------AGAATCTTGATGATGCTGCAT 	13
--------------------------------------------------------------------------------------------------------------------------AGAATCTTGATGATGCTGCA 	3
--------------------------------------------------------------------------------------------------------------------------AGAATCTTGATGATGCTGC 	1
---------------------------------------------------------------------------------------------------------------------------GAATCTTGATGATGCTGCAT 	2
---------------------------------------------------------------------------------------------------------------------------GAATCTTGATGATGCTGCA 	1


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Solanum lycopersicum GSM304985 AGAATCTTGATGATGCTGCAT GTAGCATCATCAAGATTCATA down 1 0


Secondary structure

AACACAGTTGTTGTTTGCAAATGTAGCATCATCAAGATTCATACATGAAAATTAAGAGGCAAGGTTAAATATGTAGCTTTAATTTGAAATGAAAAATATAATATATCATGACCATGTCTATTTATTTCAAAGTGAGAATCTTGATGATGCTGCATCAGCAATAAATAACTATCG
----------------------GTAGCATCATCAAGATTCATA 	4
----------------------GTAGCATCATCAAGATTCAT 	2
----------------------GTAGCATCATCAAGATTCA 	2
------------------------------------------------------------------------------------------------------------------------------------TGAGAATCTTGATGATGCTGCA 	1
-------------------------------------------------------------------------------------------------------------------------------------GAGAATCTTGATGATGCTGCA 	1
--------------------------------------------------------------------------------------------------------------------------------------AGAATCTTGATGATGCTGCAT 	13
--------------------------------------------------------------------------------------------------------------------------------------AGAATCTTGATGATGCTGCA 	3
--------------------------------------------------------------------------------------------------------------------------------------AGAATCTTGATGATGCTGC 	1
---------------------------------------------------------------------------------------------------------------------------------------GAATCTTGATGATGCTGCAT 	2
---------------------------------------------------------------------------------------------------------------------------------------GAATCTTGATGATGCTGCA 	1

Overlaps with: MNEST041543 MNEST054556
Overlaps with miRBase pre-miRNAs: sly-MIR172b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Solanum lycopersicum GSM304985 AGAATCTTGATGATGCTGCAT GCAGCACCATTAAGATTCACA down 2 0


Secondary structure

TTACTTGCTAGTGCAGCACCATTAAGATTCACATAGAAAATATGGAACGAAATTTGCTCAATTTTTCAATATATGAGAATCTTGATGATGCTGCATTGGCAAATC
------------GCAGCACCATTAAGATTCACA 	1
------------GCAGCACCATTAAGATTCAC 	1
-------------------------------------------------------------------------TGAGAATCTTGATGATGCTGCA 	1
--------------------------------------------------------------------------GAGAATCTTGATGATGCTGCA 	1
---------------------------------------------------------------------------AGAATCTTGATGATGCTGCATT 	1
---------------------------------------------------------------------------AGAATCTTGATGATGCTGCAT 	13
---------------------------------------------------------------------------AGAATCTTGATGATGCTGCA 	3
---------------------------------------------------------------------------AGAATCTTGATGATGCTGC 	1
----------------------------------------------------------------------------GAATCTTGATGATGCTGCATT 	1
----------------------------------------------------------------------------GAATCTTGATGATGCTGCAT 	2
----------------------------------------------------------------------------GAATCTTGATGATGCTGCA 	1


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Solanum lycopersicum GSM304986 GAATCTTGATGATGCTGCAT GCAACATCATCAAGATTCAC down 1 0


Secondary structure

ATCATCAGTCAATGTTTGAGGATGCAACATCATCAAGATTCACAAAACTTGAAGGGAGAAGTATTTAATTATATATTTAGGGTGAATATTGGATATATAATATAGTTCAAAGTCTCTTATTTTCTCTCTTTGGGAATCTTGATGATGCTGCATCATCTAACATATGACTCTAT
------------------------------------------------------------------------------------------------------------------------------------GGAATCTTGATGATGCTGCA 	1
------------------------------------------------------------------------------------------------------------------------------------GGAATCTTGATGATGCTGC 	1
-------------------------------------------------------------------------------------------------------------------------------------GAATCTTGATGATGCTGCAT 	8
-------------------------------------------------------------------------------------------------------------------------------------GAATCTTGATGATGCTGCA 	1
--------------------------------------------------------------------------------------------------------------------------------------AATCTTGATGATGCTGCAT 	1

Overlaps with: MNEST002636
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Solanum lycopersicum GSM304986 GAATCTTGATGATGCTGCAT GCAGCACTATTAAGATTCTC down 1 0


Secondary structure

TACACAGTCGTTGTTTGTAAATGCAGCACTATTAAGATTCTCAAATATTCTGACATTTAAAAAGCAATTAAATGTGAATCTTGATGATGCTGCATTAGCAATAAACGACTAAAC
--------------------------------------------------------------------------TGAATCTTGATGATGCTGCAT 	1
--------------------------------------------------------------------------TGAATCTTGATGATGCTGCA 	2
---------------------------------------------------------------------------GAATCTTGATGATGCTGCAT 	8
---------------------------------------------------------------------------GAATCTTGATGATGCTGCA 	1
----------------------------------------------------------------------------AATCTTGATGATGCTGCAT 	1


HuntMi prediction: true miRNA