miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: GAATGTTGCTCGGTGAACCCCT

selected species: Mus musculus



1 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Mus musculus GSM539870 GAATGTTGCTCGGTGAACCCCT AGGTTACCCGAGCAACTTTGC down 3 1


Secondary structure

CCTCTCCGTGGTACTCGGAGAGAGGTTACCCGAGCAACTTTGCATCTGGAGGACGAATGTTGCTCGGTGAACCCCTTTTCGGTATCAAATCCCTC
----------------------AGGTTACCCGAGCAACTTTGCATC 	1
----------------------AGGTTACCCGAGCAACTTTGCAT 	2
-----------------------------------------------------CGAATGTTGCTCGGTGAACCCCT 	1
------------------------------------------------------GAATGTTGCTCGGTGAACCCCTT 	1
------------------------------------------------------GAATGTTGCTCGGTGAACCCCT 	5
------------------------------------------------------GAATGTTGCTCGGTGAACCCC 	1

Overlaps with: MNEST032902 MNEST032903
Overlaps with miRBase pre-miRNAs: rno-mir-409b mmu-mir-409 cgr-mir-409 rno-mir-409a
HuntMi prediction: true miRNA