miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: GAGCTCAGGAGGGATAGCGCC

selected species: Physcomitrella patens



7 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Physcomitrella patens GSM313212 GAGCTCAGGAGGGATAGCGCC CGCTGTCCATTCTGAGCATTG up 2 0


Secondary structure

CTGCTGGTAGGTATAATTACAGAGCTCAGGAGGGATAGCGCCCATCTCAGTCTTTTTTAGCATCCAATTGAAATGGTTAACATTCCTTTGGATAGCTAGACGGCGAAGCATGGCGCTGTCCATTCTGAGCATTGCATTTGTACCTCCCTGAA
---------------------GAGCTCAGGAGGGATAGCGC 	5
---------------------GAGCTCAGGAGGGATAGCGCCC 	1
---------------------GAGCTCAGGAGGGATAGCGCC 	247
----------------------AGCTCAGGAGGGATAGCGCCC 	1
----------------------AGCTCAGGAGGGATAGCGCC 	10
--------------------------------------------------------------------------------------------------------------TGGCGCTGTCCATTCTGAGCATTG 	1
-----------------------------------------------------------------------------------------------------------------CGCTGTCCATTCTGAGCATT 	69
-----------------------------------------------------------------------------------------------------------------CGCTGTCCATTCTGAGCAT 	15
-----------------------------------------------------------------------------------------------------------------CGCTGTCCATTCTGAGCATTG 	35
------------------------------------------------------------------------------------------------------------------GCTGTCCATTCTGAGCATT 	1
------------------------------------------------------------------------------------------------------------------GCTGTCCATTCTGAGCATTG 	1


Overlaps with: MNEST039487 MNEST051393 MNEST051394
Overlaps with miRBase pre-miRNAs: ppt-MIR390c
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Physcomitrella patens GSM115095 GAGCTCAGGAGGGATAGCGCC CGCTGTCCATTCTGAGCATTG up 2 0


Secondary structure

CTGCTGGTAGGTATAATTACAGAGCTCAGGAGGGATAGCGCCCATCTCAGTCTTTTTTAGCATCCAATTGAAATGGTTAACATTCCTTTGGATAGCTAGACGGCGAAGCATGGCGCTGTCCATTCTGAGCATTGCATTTGTACCTCCCTGAA
---------------------GAGCTCAGGAGGGATAGCGCC 	75
---------------------GAGCTCAGGAGGGATAGCG 	1
---------------------GAGCTCAGGAGGGATAGCGC 	1
----------------------AGCTCAGGAGGGATAGCGCC 	24
----------------------AGCTCAGGAGGGATAGCGC 	1
-----------------------GCTCAGGAGGGATAGCGCC 	14
-----------------------------------------------------------------------------------------------------------------CGCTGTCCATTCTGAGCATT 	41
-----------------------------------------------------------------------------------------------------------------CGCTGTCCATTCTGAGCATTG 	20
-----------------------------------------------------------------------------------------------------------------CGCTGTCCATTCTGAGCAT 	8


Overlaps with: MNEST039487 MNEST051393 MNEST051394
Overlaps with miRBase pre-miRNAs: ppt-MIR390c
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Physcomitrella patens GSM313213 GAGCTCAGGAGGGATAGCGCC CGCTGTCCATTCTGAGCATTG up 2 0


Secondary structure

CTGCTGGTAGGTATAATTACAGAGCTCAGGAGGGATAGCGCCCATCTCAGTCTTTTTTAGCATCCAATTGAAATGGTTAACATTCCTTTGGATAGCTAGACGGCGAAGCATGGCGCTGTCCATTCTGAGCATTGCATTTGTACCTCCCTGAA
---------------------GAGCTCAGGAGGGATAGCGC 	6
---------------------GAGCTCAGGAGGGATAGCG 	1
---------------------GAGCTCAGGAGGGATAGCGCCC 	2
---------------------GAGCTCAGGAGGGATAGCGCC 	288
----------------------AGCTCAGGAGGGATAGCGCC 	6
-----------------------GCTCAGGAGGGATAGCGCC 	1
-------------------------------------------------------------------------------------------------------------ATGGCGCTGTCCATTCTGAGC 	1
----------------------------------------------------------------------------------------------------------------GCGCTGTCCATTCTGAGCAT 	1
----------------------------------------------------------------------------------------------------------------GCGCTGTCCATTCTGAGCATT 	2
-----------------------------------------------------------------------------------------------------------------CGCTGTCCATTCTGAGCATT 	77
-----------------------------------------------------------------------------------------------------------------CGCTGTCCATTCTGAGCAT 	17
-----------------------------------------------------------------------------------------------------------------CGCTGTCCATTCTGAGCATTG 	29
------------------------------------------------------------------------------------------------------------------GCTGTCCATTCTGAGCATT 	2


Overlaps with: MNEST039487 MNEST051393 MNEST051394
Overlaps with miRBase pre-miRNAs: ppt-MIR390c
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Physcomitrella patens GSM313215 GAGCTCAGGAGGGATAGCGCC CGCTGTCCATTCTGAGCATTG up 2 0


Secondary structure

CTGCTGGTAGGTATAATTACAGAGCTCAGGAGGGATAGCGCCCATCTCAGTCTTTTTTAGCATCCAATTGAAATGGTTAACATTCCTTTGGATAGCTAGACGGCGAAGCATGGCGCTGTCCATTCTGAGCATTGCATTTGTACCTCCCTGAA
--------------------AGAGCTCAGGAGGGATAGCGCC 	1
---------------------GAGCTCAGGAGGGATAGCGC 	7
---------------------GAGCTCAGGAGGGATAGCGCCC 	8
---------------------GAGCTCAGGAGGGATAGCGCC 	1150
---------------------GAGCTCAGGAGGGATAGCG 	2
----------------------AGCTCAGGAGGGATAGCGCC 	26
-----------------------GCTCAGGAGGGATAGCGCC 	1
-------------------------------------------------------------------------------------------------------------ATGGCGCTGTCCATTCTGAGC 	1
----------------------------------------------------------------------------------------------------------------GCGCTGTCCATTCTGAGCATTG 	1
----------------------------------------------------------------------------------------------------------------GCGCTGTCCATTCTGAGCATT 	2
-----------------------------------------------------------------------------------------------------------------CGCTGTCCATTCTGAGCATT 	400
-----------------------------------------------------------------------------------------------------------------CGCTGTCCATTCTGAGCATTG 	96
-----------------------------------------------------------------------------------------------------------------CGCTGTCCATTCTGAGCAT 	14
------------------------------------------------------------------------------------------------------------------GCTGTCCATTCTGAGCATT 	6
------------------------------------------------------------------------------------------------------------------GCTGTCCATTCTGAGCATTG 	2


Overlaps with: MNEST039487 MNEST051393 MNEST051394
Overlaps with miRBase pre-miRNAs: ppt-MIR390c
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Physcomitrella patens GSM115096 GAGCTCAGGAGGGATAGCGCC CGCTGTCCATTCTGAGCATTG up 2 0


Secondary structure

CTGCTGGTAGGTATAATTACAGAGCTCAGGAGGGATAGCGCCCATCTCAGTCTTTTTTAGCATCCAATTGAAATGGTTAACATTCCTTTGGATAGCTAGACGGCGAAGCATGGCGCTGTCCATTCTGAGCATTGCATTTGTACCTCCCTGAA
--------------------AGAGCTCAGGAGGGATAGCGCC 	4
---------------------GAGCTCAGGAGGGATAGCGCCC 	3
---------------------GAGCTCAGGAGGGATAGCGCC 	180
---------------------GAGCTCAGGAGGGATAGCGC 	10
----------------------AGCTCAGGAGGGATAGCGCC 	37
----------------------AGCTCAGGAGGGATAGCGC 	1
----------------------AGCTCAGGAGGGATAGCGCCC 	1
-----------------------GCTCAGGAGGGATAGCGCC 	17
--------------------------------------------------------------------------------------------------------------TGGCGCTGTCCATTCTGAGCATT 	1
----------------------------------------------------------------------------------------------------------------GCGCTGTCCATTCTGAGCATT 	1
-----------------------------------------------------------------------------------------------------------------CGCTGTCCATTCTGAGCATT 	123
-----------------------------------------------------------------------------------------------------------------CGCTGTCCATTCTGAGCATTG 	27
-----------------------------------------------------------------------------------------------------------------CGCTGTCCATTCTGAGCAT 	22
------------------------------------------------------------------------------------------------------------------GCTGTCCATTCTGAGCATT 	2


Overlaps with: MNEST039487 MNEST051393 MNEST051394
Overlaps with miRBase pre-miRNAs: ppt-MIR390c
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Physcomitrella patens GSM313216 GAGCTCAGGAGGGATAGCGCC CGCTGTCCATTCTGAGCATTG up 2 0


Secondary structure

CTGCTGGTAGGTATAATTACAGAGCTCAGGAGGGATAGCGCCCATCTCAGTCTTTTTTAGCATCCAATTGAAATGGTTAACATTCCTTTGGATAGCTAGACGGCGAAGCATGGCGCTGTCCATTCTGAGCATTGCATTTGTACCTCCCTGAA
--------------------AGAGCTCAGGAGGGATAGCGC 	1
--------------------AGAGCTCAGGAGGGATAGCGCC 	2
---------------------GAGCTCAGGAGGGATAGCGC 	17
---------------------GAGCTCAGGAGGGATAGCGCCC 	10
---------------------GAGCTCAGGAGGGATAGCGCCCA 	1
---------------------GAGCTCAGGAGGGATAGCGCC 	1678
---------------------GAGCTCAGGAGGGATAGCG 	15
----------------------AGCTCAGGAGGGATAGCGCC 	39
-------------------------TCAGGAGGGATAGCGCCCATC 	1
-------------------------------------------------------------------------------------------------------------ATGGCGCTGTCCATTCTGAGC 	3
--------------------------------------------------------------------------------------------------------------TGGCGCTGTCCATTCTGAGCATT 	2
--------------------------------------------------------------------------------------------------------------TGGCGCTGTCCATTCTGAGC 	1
--------------------------------------------------------------------------------------------------------------TGGCGCTGTCCATTCTGAGCAT 	1
----------------------------------------------------------------------------------------------------------------GCGCTGTCCATTCTGAGCA 	1
----------------------------------------------------------------------------------------------------------------GCGCTGTCCATTCTGAGCAT 	1
----------------------------------------------------------------------------------------------------------------GCGCTGTCCATTCTGAGCATTG 	2
----------------------------------------------------------------------------------------------------------------GCGCTGTCCATTCTGAGCATT 	6
-----------------------------------------------------------------------------------------------------------------CGCTGTCCATTCTGAGCATT 	967
-----------------------------------------------------------------------------------------------------------------CGCTGTCCATTCTGAGCATTGC 	4
-----------------------------------------------------------------------------------------------------------------CGCTGTCCATTCTGAGCAT 	80
-----------------------------------------------------------------------------------------------------------------CGCTGTCCATTCTGAGCATTG 	291
------------------------------------------------------------------------------------------------------------------GCTGTCCATTCTGAGCATT 	16
------------------------------------------------------------------------------------------------------------------GCTGTCCATTCTGAGCATTG 	7
-------------------------------------------------------------------------------------------------------------------CTGTCCATTCTGAGCATTG 	1


Overlaps with: MNEST039487 MNEST051393 MNEST051394
Overlaps with miRBase pre-miRNAs: ppt-MIR390c
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
7 Physcomitrella patens GSM313217 GAGCTCAGGAGGGATAGCGCC CGCTGTCCATTCTGAGCATTG up 2 0


Secondary structure

CTGCTGGTAGGTATAATTACAGAGCTCAGGAGGGATAGCGCCCATCTCAGTCTTTTTTAGCATCCAATTGAAATGGTTAACATTCCTTTGGATAGCTAGACGGCGAAGCATGGCGCTGTCCATTCTGAGCATTGCATTTGTACCTCCCTGAA
--------------------AGAGCTCAGGAGGGATAGCGCC 	3
---------------------GAGCTCAGGAGGGATAGCGC 	20
---------------------GAGCTCAGGAGGGATAGCGCC 	1637
---------------------GAGCTCAGGAGGGATAGCGCCCA 	1
---------------------GAGCTCAGGAGGGATAGCGCCC 	10
---------------------GAGCTCAGGAGGGATAGCG 	6
----------------------AGCTCAGGAGGGATAGCGCC 	29
-------------------------------------------------------------------------------------------------------------ATGGCGCTGTCCATTCTGAGC 	5
--------------------------------------------------------------------------------------------------------------TGGCGCTGTCCATTCTGAGCATT 	1
----------------------------------------------------------------------------------------------------------------GCGCTGTCCATTCTGAGCAT 	1
----------------------------------------------------------------------------------------------------------------GCGCTGTCCATTCTGAGCATT 	9
-----------------------------------------------------------------------------------------------------------------CGCTGTCCATTCTGAGCATT 	1018
-----------------------------------------------------------------------------------------------------------------CGCTGTCCATTCTGAGCATTG 	251
-----------------------------------------------------------------------------------------------------------------CGCTGTCCATTCTGAGCATTGC 	3
-----------------------------------------------------------------------------------------------------------------CGCTGTCCATTCTGAGCAT 	73
------------------------------------------------------------------------------------------------------------------GCTGTCCATTCTGAGCATT 	12
------------------------------------------------------------------------------------------------------------------GCTGTCCATTCTGAGCATTG 	3
-------------------------------------------------------------------------------------------------------------------CTGTCCATTCTGAGCATTG 	1


Overlaps with: MNEST039487 MNEST051393 MNEST051394
Overlaps with miRBase pre-miRNAs: ppt-MIR390c
HuntMi prediction: true miRNA