miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: GAGCTGCCCTCAGAAAAACTCT

selected species: Caenorhabditis elegans



2 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Caenorhabditis elegans GSM297751-9445 GAGCTGCCCTCAGAAAAACTCT AGTTTCTCTGGGAAAGCTATCGG down 4 3


Secondary structure

TCTGATTCTTGAAAACTCCAATAGTTTCTCTGGGAAAGCTATCGGCCAAATTTAACTGTCCGAGCTGCCCTCAGAAAAACTCTTGGCTCATCGAGAAATTCT
----------------------AGTTTCTCTGGGAAAGCTATCGGC 	1
------------------------------------------------------------CGAGCTGCCCTCAGAAAAACT 	1
------------------------------------------------------------CGAGCTGCCCTCAGAAAAACTCT 	7
-------------------------------------------------------------GAGCTGCCCTCAGAAAAACTCTT 	1
-------------------------------------------------------------GAGCTGCCCTCAGAAAAACTCT 	29

Overlaps with: MNEST038415
Overlaps with miRBase pre-miRNAs: cel-mir-1822
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Caenorhabditis elegans GSM297752-9446 GAGCTGCCCTCAGAAAAACTCT AGTTTCTCTGGGAAAGCTATCGG down 4 3


Secondary structure

TCTGATTCTTGAAAACTCCAATAGTTTCTCTGGGAAAGCTATCGGCCAAATTTAACTGTCCGAGCTGCCCTCAGAAAAACTCTTGGCTCATCGAGAAATTCT
------------------------------------------------------------CGAGCTGCCCTCAGAAAAACTCT 	12
-------------------------------------------------------------GAGCTGCCCTCAGAAAAACTCT 	44
-------------------------------------------------------------GAGCTGCCCTCAGAAAAAC 	1
-------------------------------------------------------------GAGCTGCCCTCAGAAAAACT 	1

Overlaps with: MNEST038415
Overlaps with miRBase pre-miRNAs: cel-mir-1822
HuntMi prediction: true miRNA