miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: GAGGGCAGATTATTTCTGATAC

selected species: Acyrthosiphon pisum



1 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Acyrthosiphon pisum GSM502519_unique_quant GAGGGCAGATTATTTCTGATAC AACAGAGTAATTCTGTCCTTCT up 5 0


Secondary structure

ATTCACGTATTTGTCTGTTTGGAGGGCAGATTATTTCTGATACGATTTTGACTTTTGACAGGTAACAGAGTAATTCTGTCCTTCTCACCGGCAATCTTACACC
---------------------GAGGGCAGATTATTTCTGATAC 	20
---------------------GAGGGCAGATTATTTCTGATA 	8
---------------------GAGGGCAGATTATTTCTGAT 	3
---------------------------------------------------------------AACAGAGTAATTCTGTCCTTCT 	8
---------------------------------------------------------------AACAGAGTAATTCTGTCCTT 	2
---------------------------------------------------------------AACAGAGTAATTCTGTCCT 	1

Overlaps with: MNEST035142
Overlaps with miRBase pre-miRNAs: api-mir-3042
HuntMi prediction: true miRNA