miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



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selected mature miRNA sequence: GAGTTCCACTAAGCAAGTTTT

selected species: Drosophila melanogaster



7 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Drosophila melanogaster GSM399107-16288 GAGTTCCACTAAGCAAGTTTT AACTTGACACGTTGAGCTCGT up 5 0


Secondary structure

ACGTCGTCATTAGTGGCATTCGGTGAATCCCCAAGTCTCTGTCCTACGTCCGAGTTCCACTAAGCAAGTTTTGAGATCGTTTTAAAAACAAAAACTTGACACGTTGAGCTCGTTCGTGGGATGGACTACTGCAATTCGAAATCCAGTTGCTACTTAATTTA
---------------------------------------------------GAGTTCCACTAAGCAAGTTTT 	14
---------------------------------------------------GAGTTCCACTAAGCAAGTTT 	1

Overlaps with: MNEST037278
Overlaps with miRBase pre-miRNAs: dme-mir-969 dsi-mir-969
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Drosophila melanogaster GSM399106-16287 GAGTTCCACTAAGCAAGTTTT AACTTGACACGTTGAGCTCGT up 5 0


Secondary structure

ACGTCGTCATTAGTGGCATTCGGTGAATCCCCAAGTCTCTGTCCTACGTCCGAGTTCCACTAAGCAAGTTTTGAGATCGTTTTAAAAACAAAAACTTGACACGTTGAGCTCGTTCGTGGGATGGACTACTGCAATTCGAAATCCAGTTGCTACTTAATTTA
---------------------------------------------------GAGTTCCACTAAGCAAGTTTT 	5

Overlaps with: MNEST037278
Overlaps with miRBase pre-miRNAs: dme-mir-969 dsi-mir-969
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Drosophila melanogaster GSM466487_wt_total GAGTTCCACTAAGCAAGTTTT AACTTGACACGTTGAGCTCGT up 5 0


Secondary structure

ACGTCGTCATTAGTGGCATTCGGTGAATCCCCAAGTCTCTGTCCTACGTCCGAGTTCCACTAAGCAAGTTTTGAGATCGTTTTAAAAACAAAAACTTGACACGTTGAGCTCGTTCGTGGGATGGACTACTGCAATTCGAAATCCAGTTGCTACTTAATTTA
---------------------------------------------------GAGTTCCACTAAGCAAGTTTT 	80
---------------------------------------------------GAGTTCCACTAAGCAAGTT 	2
---------------------------------------------------GAGTTCCACTAAGCAAGTTT 	6
--------------------------------------------------------------------------------------------AACTTGACACGTTGAGCTCGT 	28
--------------------------------------------------------------------------------------------AACTTGACACGTTGAGCTCG 	1

Overlaps with: MNEST037278
Overlaps with miRBase pre-miRNAs: dme-mir-969 dsi-mir-969
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Drosophila melanogaster GSM466494_r2d2_heterozygotes_untreated GAGTTCCACTAAGCAAGTTTT AACTTGACACGTTGAGCTCGT up 5 0


Secondary structure

ACGTCGTCATTAGTGGCATTCGGTGAATCCCCAAGTCTCTGTCCTACGTCCGAGTTCCACTAAGCAAGTTTTGAGATCGTTTTAAAAACAAAAACTTGACACGTTGAGCTCGTTCGTGGGATGGACTACTGCAATTCGAAATCCAGTTGCTACTTAATTTA
---------------------------------------------------GAGTTCCACTAAGCAAGTTTT 	72
---------------------------------------------------GAGTTCCACTAAGCAAGTTT 	11
----------------------------------------------------AGTTCCACTAAGCAAGTTTT 	3
--------------------------------------------------------------------------------------------AACTTGACACGTTGAGCTCGT 	13
---------------------------------------------------------------------------------------------ACTTGACACGTTGAGCTCGT 	1

Overlaps with: MNEST037278
Overlaps with miRBase pre-miRNAs: dme-mir-969 dsi-mir-969
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Drosophila melanogaster GSM466496_r2d2_homozygotes_untreated GAGTTCCACTAAGCAAGTTTT AACTTGACACGTTGAGCTCGT up 5 0


Secondary structure

ACGTCGTCATTAGTGGCATTCGGTGAATCCCCAAGTCTCTGTCCTACGTCCGAGTTCCACTAAGCAAGTTTTGAGATCGTTTTAAAAACAAAAACTTGACACGTTGAGCTCGTTCGTGGGATGGACTACTGCAATTCGAAATCCAGTTGCTACTTAATTTA
--------------------------------------------------CGAGTTCCACTAAGCAAGTTTT 	1
---------------------------------------------------GAGTTCCACTAAGCAAGTTTT 	108
---------------------------------------------------GAGTTCCACTAAGCAAGTTT 	5
----------------------------------------------------AGTTCCACTAAGCAAGTTTT 	2
----------------------------------------------------AGTTCCACTAAGCAAGTTT 	5
------------------------------------------------------------------------------------------AAAACTTGACACGTTGAGCTCG 	1
--------------------------------------------------------------------------------------------AACTTGACACGTTGAGCTCGT 	24
--------------------------------------------------------------------------------------------AACTTGACACGTTGAGCTCG 	1
-----------------------------------------------------------------------------------------------TTGACACGTTGAGCTCGTTCGT 	1

Overlaps with: MNEST037278
Overlaps with miRBase pre-miRNAs: dme-mir-969 dsi-mir-969
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Drosophila melanogaster GSM322543-14323 GAGTTCCACTAAGCAAGTTTT AACTTGACACGTTGAGCTCGT up 5 0


Secondary structure

ACGTCGTCATTAGTGGCATTCGGTGAATCCCCAAGTCTCTGTCCTACGTCCGAGTTCCACTAAGCAAGTTTTGAGATCGTTTTAAAAACAAAAACTTGACACGTTGAGCTCGTTCGTGGGATGGACTACTGCAATTCGAAATCCAGTTGCTACTTAATTTA
---------------------------------------------------GAGTTCCACTAAGCAAGTTTT 	216
---------------------------------------------------GAGTTCCACTAAGCAAGTTT 	6
--------------------------------------------------------------------------------------------AACTTGACACGTTGAGCTCGT 	2
-----------------------------------------------------------------------------------------------------------------TCGTGGGATGGACTACTGC 	26
-----------------------------------------------------------------------------------------------------------------TCGTGGGATGGACTACTGCA 	4
-----------------------------------------------------------------------------------------------------------------TCGTGGGATGGACTACTGCAA 	19

Overlaps with: MNEST037278
Overlaps with miRBase pre-miRNAs: dme-mir-969 dsi-mir-969
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
7 Drosophila melanogaster GSM466492_dcr-2_homozygotes_untreated GAGTTCCACTAAGCAAGTTTT AACTTGACACGTTGAGCTCGT up 5 0


Secondary structure

ACGTCGTCATTAGTGGCATTCGGTGAATCCCCAAGTCTCTGTCCTACGTCCGAGTTCCACTAAGCAAGTTTTGAGATCGTTTTAAAAACAAAAACTTGACACGTTGAGCTCGTTCGTGGGATGGACTACTGCAATTCGAAATCCAGTTGCTACTTAATTTA
--------------------------------------------------CGAGTTCCACTAAGCAAGTTTT 	1
---------------------------------------------------GAGTTCCACTAAGCAAGTTTT 	81
---------------------------------------------------GAGTTCCACTAAGCAAGTT 	1
---------------------------------------------------GAGTTCCACTAAGCAAGTTT 	10
----------------------------------------------------AGTTCCACTAAGCAAGTTT 	1
----------------------------------------------------AGTTCCACTAAGCAAGTTTT 	4
------------------------------------------------------------------------------------------AAAACTTGACACGTTGAGCTCGT 	1
--------------------------------------------------------------------------------------------AACTTGACACGTTGAGCTCGT 	14
--------------------------------------------------------------------------------------------AACTTGACACGTTGAGCTCG 	1
---------------------------------------------------------------------------------------------ACTTGACACGTTGAGCTCGT 	1

Overlaps with: MNEST037278
Overlaps with miRBase pre-miRNAs: dme-mir-969 dsi-mir-969
HuntMi prediction: true miRNA