miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

Please select library, species and/or miRNA sequence.

selected mature miRNA sequence: GATATAACCACTGCCAGACTGA

selected species: Mus musculus

40 records found

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
1	Mus musculus	GSM527274-2107	GATATAACCACTGCCAGACTGA	AGTCAGGCTGCTGGCTATACACCA	down	5	2

Secondary structure

GGAAGATTTCATCAGTCAGGCTGCTGGCTATACACCAGGACTTATCTGGTCCTGGATATAACCACTGCCAGACTGAAAGGTGCTAA
---------------------------------------------------CTGGATATAACCACTGCCAGA 	1
-----------------------------------------------------GGATATAACCACTGCCAGACTG 	1
------------------------------------------------------GATATAACCACTGCCAGACTG 	6
------------------------------------------------------GATATAACCACTGCCAGACT 	9
------------------------------------------------------GATATAACCACTGCCAGACTGA 	330
------------------------------------------------------GATATAACCACTGCCAGACTGAA 	3
-------------------------------------------------------ATATAACCACTGCCAGACTGA 	1

Overlaps with: MNEST032018
Overlaps with miRBase pre-miRNAs: mmu-mir-344d-1
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
2	Mus musculus	GSM527274-2107	GATATAACCACTGCCAGACTGA	AGTTAGGCTGCTGGCTATACTCCA	down	4	2

Secondary structure

GAAGATTTCATCAGTTAGGCTGCTGGCTATACTCCAGGACTTACCTTGTCCTGGATATAACCACTGCCAGACTGAAAGGTGCTA
--------------------------------------------------CTGGATATAACCACTGCCAGA 	1
----------------------------------------------------GGATATAACCACTGCCAGACTG 	1
-----------------------------------------------------GATATAACCACTGCCAGACTG 	6
-----------------------------------------------------GATATAACCACTGCCAGACT 	9
-----------------------------------------------------GATATAACCACTGCCAGACTGA 	330
-----------------------------------------------------GATATAACCACTGCCAGACTGAA 	3
------------------------------------------------------ATATAACCACTGCCAGACTGA 	1

HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
3	Mus musculus	GSM527274-2107	GATATAACCACTGCCAGACTGA	GTCTGGTTGCTGGCTATATTCCA	down	4	2

Secondary structure

AAGATTTCATTAGTCTGGTTGCTGGCTATATTCCAGGACTTATCTGGTCCTGGATATAACCACTGCCAGACTGAATGGTGCTA
-------------------------------------------------CTGGATATAACCACTGCCAGA 	1
---------------------------------------------------GGATATAACCACTGCCAGACTG 	1
----------------------------------------------------GATATAACCACTGCCAGACTG 	6
----------------------------------------------------GATATAACCACTGCCAGACT 	9
----------------------------------------------------GATATAACCACTGCCAGACTGA 	330
----------------------------------------------------GATATAACCACTGCCAGACTGAAT 	1
----------------------------------------------------GATATAACCACTGCCAGACTGAA 	3
-----------------------------------------------------ATATAACCACTGCCAGACTGA 	1

Overlaps with: MNEST032019
Overlaps with miRBase pre-miRNAs: mmu-mir-344d-2
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
4	Mus musculus	GSM527274-2107	GATATAACCACTGCCAGACTGA	AGTCAGGCTGCTGGTGATTCTCCA	down	5	2

Secondary structure

ATCTGCAGGAGAAGATTTGATCAGTCAGGCTGCTGGTGATTCTCCAGGACTTATCTGGTCCTGGATATAACCACTGCCAGACTGAATGGTGCTAAAGAGAAGGG
------------------------------------------------------------CTGGATATAACCACTGCCAGA 	1
--------------------------------------------------------------GGATATAACCACTGCCAGACTG 	1
---------------------------------------------------------------GATATAACCACTGCCAGACTG 	6
---------------------------------------------------------------GATATAACCACTGCCAGACT 	9
---------------------------------------------------------------GATATAACCACTGCCAGACTGA 	330
---------------------------------------------------------------GATATAACCACTGCCAGACTGAAT 	1
---------------------------------------------------------------GATATAACCACTGCCAGACTGAA 	3
----------------------------------------------------------------ATATAACCACTGCCAGACTGA 	1

HuntMi prediction: not a miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
5	Mus musculus	GSM527274-2107	GATATAACCACTGCCAGACTGA	AGTCAGGCTAGTGGTTATACTCCA	down	2	2

Secondary structure

TGTTTGCAGGGGAAGATTTCATCAGTCAGGCTAGTGGTTATACTCCAGGACTTATCTGGTCCTGGATATAACCACTGCCAGACTGAATGGTGCTAAAGAGAAGGGA
-----------------------AGTCAGGCTAGTGGTTATACTCC 	14
-----------------------AGTCAGGCTAGTGGTTATACTC 	1
-----------------------AGTCAGGCTAGTGGTTATACTCCA 	12
-------------------------TCAGGCTAGTGGTTATACTCCAG 	1
---------------------------AGGCTAGTGGTTATACTCCAGGA 	1
-------------------------------------------------------------CTGGATATAACCACTGCCAGA 	1
---------------------------------------------------------------GGATATAACCACTGCCAGACTG 	1
----------------------------------------------------------------GATATAACCACTGCCAGACTG 	6
----------------------------------------------------------------GATATAACCACTGCCAGACT 	9
----------------------------------------------------------------GATATAACCACTGCCAGACTGA 	330
----------------------------------------------------------------GATATAACCACTGCCAGACTGAAT 	1
----------------------------------------------------------------GATATAACCACTGCCAGACTGAA 	3
-----------------------------------------------------------------ATATAACCACTGCCAGACTGA 	1

Overlaps with: MNEST032020
Overlaps with miRBase pre-miRNAs: mmu-mir-344d-3
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
6	Mus musculus	GSM527280	GATATAACCACTGCCAGACTGA	AGTTAGGCTGCTGGCTATACTCCA	down	4	2

Secondary structure

GAAGATTTCATCAGTTAGGCTGCTGGCTATACTCCAGGACTTACCTTGTCCTGGATATAACCACTGCCAGACTGAAAGGTGCTA
-----------------------------------------------------GATATAACCACTGCCAGACTGAA 	2
-----------------------------------------------------GATATAACCACTGCCAGACTG 	7
-----------------------------------------------------GATATAACCACTGCCAGACTGA 	213
-----------------------------------------------------GATATAACCACTGCCAGACT 	2
------------------------------------------------------ATATAACCACTGCCAGACTGA 	1

HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
7	Mus musculus	GSM527280	GATATAACCACTGCCAGACTGA	GTCTGGTTGCTGGCTATATTCCA	down	4	2

Secondary structure

AAGATTTCATTAGTCTGGTTGCTGGCTATATTCCAGGACTTATCTGGTCCTGGATATAACCACTGCCAGACTGAATGGTGCTA
----------------------------------------------------GATATAACCACTGCCAGACTGAA 	2
----------------------------------------------------GATATAACCACTGCCAGACTG 	7
----------------------------------------------------GATATAACCACTGCCAGACTGAAT 	1
----------------------------------------------------GATATAACCACTGCCAGACTGA 	213
----------------------------------------------------GATATAACCACTGCCAGACT 	2
-----------------------------------------------------ATATAACCACTGCCAGACTGA 	1

Overlaps with: MNEST032019
Overlaps with miRBase pre-miRNAs: mmu-mir-344d-2
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
8	Mus musculus	GSM527280	GATATAACCACTGCCAGACTGA	AGTCAGGCTGCTGGTGATTCTCCA	down	5	2

Secondary structure

ATCTGCAGGAGAAGATTTGATCAGTCAGGCTGCTGGTGATTCTCCAGGACTTATCTGGTCCTGGATATAACCACTGCCAGACTGAATGGTGCTAAAGAGAAGGG
---------------------------------------------------------------GATATAACCACTGCCAGACTGAA 	2
---------------------------------------------------------------GATATAACCACTGCCAGACTG 	7
---------------------------------------------------------------GATATAACCACTGCCAGACTGAAT 	1
---------------------------------------------------------------GATATAACCACTGCCAGACTGA 	213
---------------------------------------------------------------GATATAACCACTGCCAGACT 	2
----------------------------------------------------------------ATATAACCACTGCCAGACTGA 	1

HuntMi prediction: not a miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
9	Mus musculus	GSM527280	GATATAACCACTGCCAGACTGA	AGTCAGGCTAGTGGTTATACTCCA	down	2	2

Secondary structure

TGTTTGCAGGGGAAGATTTCATCAGTCAGGCTAGTGGTTATACTCCAGGACTTATCTGGTCCTGGATATAACCACTGCCAGACTGAATGGTGCTAAAGAGAAGGGA
-----------------------AGTCAGGCTAGTGGTTATACTC 	1
-----------------------AGTCAGGCTAGTGGTTATACTCCA 	6
-----------------------AGTCAGGCTAGTGGTTATACTCC 	5
---------------------------AGGCTAGTGGTTATACTCCAGGAC 	1
----------------------------------------------------------------GATATAACCACTGCCAGACTGAA 	2
----------------------------------------------------------------GATATAACCACTGCCAGACTG 	7
----------------------------------------------------------------GATATAACCACTGCCAGACTGAAT 	1
----------------------------------------------------------------GATATAACCACTGCCAGACTGA 	213
----------------------------------------------------------------GATATAACCACTGCCAGACT 	2
-----------------------------------------------------------------ATATAACCACTGCCAGACTGA 	1

Overlaps with: MNEST032020
Overlaps with miRBase pre-miRNAs: mmu-mir-344d-3
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
10	Mus musculus	GSM527280	GATATAACCACTGCCAGACTGA	AGTCAGGCTGCTGGCTATACACCA	down	5	2

Secondary structure

GGAAGATTTCATCAGTCAGGCTGCTGGCTATACACCAGGACTTATCTGGTCCTGGATATAACCACTGCCAGACTGAAAGGTGCTAA
-------------AGTCAGGCTGCTGGCTATACACCA 	1
------------------------------------------------------GATATAACCACTGCCAGACTGAA 	2
------------------------------------------------------GATATAACCACTGCCAGACTG 	7
------------------------------------------------------GATATAACCACTGCCAGACTGA 	213
------------------------------------------------------GATATAACCACTGCCAGACT 	2
-------------------------------------------------------ATATAACCACTGCCAGACTGA 	1

Overlaps with: MNEST032018
Overlaps with miRBase pre-miRNAs: mmu-mir-344d-1
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
11	Mus musculus	GSM527276	GATATAACCACTGCCAGACTGA	AGTCAGGCTAGTGGTTATACTCCA	down	2	2

Secondary structure

TGTTTGCAGGGGAAGATTTCATCAGTCAGGCTAGTGGTTATACTCCAGGACTTATCTGGTCCTGGATATAACCACTGCCAGACTGAATGGTGCTAAAGAGAAGGGA
-----------------------AGTCAGGCTAGTGGTTATACTC 	7
-----------------------AGTCAGGCTAGTGGTTATACTCCA 	20
-----------------------AGTCAGGCTAGTGGTTATACTCC 	16
---------------------------AGGCTAGTGGTTATACTCCAGGA 	2
---------------------------AGGCTAGTGGTTATACTCCAGGAC 	1
-------------------------------------------------------------CTGGATATAACCACTGCCAGA 	1
----------------------------------------------------------------GATATAACCACTGCCAGACTG 	7
----------------------------------------------------------------GATATAACCACTGCCAGACTGAA 	6
----------------------------------------------------------------GATATAACCACTGCCAGACTGAAT 	1
----------------------------------------------------------------GATATAACCACTGCCAGACTGA 	473
----------------------------------------------------------------GATATAACCACTGCCAGACT 	9
----------------------------------------------------------------GATATAACCACTGCCAGAC 	1
------------------------------------------------------------------TATAACCACTGCCAGACTGA 	1

Overlaps with: MNEST032020
Overlaps with miRBase pre-miRNAs: mmu-mir-344d-3
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
12	Mus musculus	GSM527276	GATATAACCACTGCCAGACTGA	AGTCAGGCTGCTGGCTATACACCA	down	5	2

Secondary structure

GGAAGATTTCATCAGTCAGGCTGCTGGCTATACACCAGGACTTATCTGGTCCTGGATATAACCACTGCCAGACTGAAAGGTGCTAA
-------------AGTCAGGCTGCTGGCTATACACC 	2
-------------AGTCAGGCTGCTGGCTATACACCAG 	1
---------------------------------------------------CTGGATATAACCACTGCCAGA 	1
------------------------------------------------------GATATAACCACTGCCAGACTG 	7
------------------------------------------------------GATATAACCACTGCCAGACTGAA 	6
------------------------------------------------------GATATAACCACTGCCAGACTGA 	473
------------------------------------------------------GATATAACCACTGCCAGACT 	9
------------------------------------------------------GATATAACCACTGCCAGAC 	1
--------------------------------------------------------TATAACCACTGCCAGACTGA 	1

Overlaps with: MNEST032018
Overlaps with miRBase pre-miRNAs: mmu-mir-344d-1
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
13	Mus musculus	GSM527276	GATATAACCACTGCCAGACTGA	AGTTAGGCTGCTGGCTATACTCCA	down	4	2

Secondary structure

GAAGATTTCATCAGTTAGGCTGCTGGCTATACTCCAGGACTTACCTTGTCCTGGATATAACCACTGCCAGACTGAAAGGTGCTA
--------------------------------------------------CTGGATATAACCACTGCCAGA 	1
-----------------------------------------------------GATATAACCACTGCCAGACTG 	7
-----------------------------------------------------GATATAACCACTGCCAGACTGAA 	6
-----------------------------------------------------GATATAACCACTGCCAGACTGA 	473
-----------------------------------------------------GATATAACCACTGCCAGACT 	9
-----------------------------------------------------GATATAACCACTGCCAGAC 	1
-------------------------------------------------------TATAACCACTGCCAGACTGA 	1

HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
14	Mus musculus	GSM527276	GATATAACCACTGCCAGACTGA	GTCTGGTTGCTGGCTATATTCCA	down	4	2

Secondary structure

AAGATTTCATTAGTCTGGTTGCTGGCTATATTCCAGGACTTATCTGGTCCTGGATATAACCACTGCCAGACTGAATGGTGCTA
-------------------------------------------------CTGGATATAACCACTGCCAGA 	1
----------------------------------------------------GATATAACCACTGCCAGACTG 	7
----------------------------------------------------GATATAACCACTGCCAGACTGAA 	6
----------------------------------------------------GATATAACCACTGCCAGACTGAAT 	1
----------------------------------------------------GATATAACCACTGCCAGACTGA 	473
----------------------------------------------------GATATAACCACTGCCAGACT 	9
----------------------------------------------------GATATAACCACTGCCAGAC 	1
------------------------------------------------------TATAACCACTGCCAGACTGA 	1

Overlaps with: MNEST032019
Overlaps with miRBase pre-miRNAs: mmu-mir-344d-2
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
15	Mus musculus	GSM527276	GATATAACCACTGCCAGACTGA	AGTCAGGCTGCTGGTGATTCTCCA	down	5	2

Secondary structure

ATCTGCAGGAGAAGATTTGATCAGTCAGGCTGCTGGTGATTCTCCAGGACTTATCTGGTCCTGGATATAACCACTGCCAGACTGAATGGTGCTAAAGAGAAGGG
------------------------------------------------------------CTGGATATAACCACTGCCAGA 	1
---------------------------------------------------------------GATATAACCACTGCCAGACTG 	7
---------------------------------------------------------------GATATAACCACTGCCAGACTGAA 	6
---------------------------------------------------------------GATATAACCACTGCCAGACTGAAT 	1
---------------------------------------------------------------GATATAACCACTGCCAGACTGA 	473
---------------------------------------------------------------GATATAACCACTGCCAGACT 	9
---------------------------------------------------------------GATATAACCACTGCCAGAC 	1
-----------------------------------------------------------------TATAACCACTGCCAGACTGA 	1

HuntMi prediction: not a miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
16	Mus musculus	GSM539869	GATATAACCACTGCCAGACTGA	GTCTGGTTGCTGGCTATATTCCA	down	4	2

Secondary structure

AAGATTTCATTAGTCTGGTTGCTGGCTATATTCCAGGACTTATCTGGTCCTGGATATAACCACTGCCAGACTGAATGGTGCTA
-----------AGTCTGGTTGCTGGCTATATTCCA 	2
----------------------------------------------------GATATAACCACTGCCAGACT 	26
----------------------------------------------------GATATAACCACTGCCAGACTGAA 	23
----------------------------------------------------GATATAACCACTGCCAGACTGA 	295
----------------------------------------------------GATATAACCACTGCCAGACTG 	92
----------------------------------------------------GATATAACCACTGCCAGAC 	1

Overlaps with: MNEST032019
Overlaps with miRBase pre-miRNAs: mmu-mir-344d-2
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
17	Mus musculus	GSM539869	GATATAACCACTGCCAGACTGA	AGTCAGGCTGCTGGTGATTCTCCA	down	5	2

Secondary structure

ATCTGCAGGAGAAGATTTGATCAGTCAGGCTGCTGGTGATTCTCCAGGACTTATCTGGTCCTGGATATAACCACTGCCAGACTGAATGGTGCTAAAGAGAAGGG
---------------------------------------------------------------GATATAACCACTGCCAGACT 	26
---------------------------------------------------------------GATATAACCACTGCCAGACTGAA 	23
---------------------------------------------------------------GATATAACCACTGCCAGACTGA 	295
---------------------------------------------------------------GATATAACCACTGCCAGACTG 	92
---------------------------------------------------------------GATATAACCACTGCCAGAC 	1

HuntMi prediction: not a miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
18	Mus musculus	GSM539869	GATATAACCACTGCCAGACTGA	AGTCAGGCTAGTGGTTATACTCCA	down	2	2

Secondary structure

TGTTTGCAGGGGAAGATTTCATCAGTCAGGCTAGTGGTTATACTCCAGGACTTATCTGGTCCTGGATATAACCACTGCCAGACTGAATGGTGCTAAAGAGAAGGGA
-----------------------AGTCAGGCTAGTGGTTATACTCCA 	5
-----------------------AGTCAGGCTAGTGGTTATACTCC 	4
-----------------------AGTCAGGCTAGTGGTTATACTC 	1
-----------------------AGTCAGGCTAGTGGTTATAC 	1
-----------------------AGTCAGGCTAGTGGTTATACT 	4
---------------------------AGGCTAGTGGTTATACTCCAGGA 	2
---------------------------AGGCTAGTGGTTATACTCCA 	1
----------------------------------------------------------------GATATAACCACTGCCAGACT 	26
----------------------------------------------------------------GATATAACCACTGCCAGACTGAA 	23
----------------------------------------------------------------GATATAACCACTGCCAGACTGA 	295
----------------------------------------------------------------GATATAACCACTGCCAGACTG 	92
----------------------------------------------------------------GATATAACCACTGCCAGAC 	1

Overlaps with: MNEST032020
Overlaps with miRBase pre-miRNAs: mmu-mir-344d-3
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
19	Mus musculus	GSM539869	GATATAACCACTGCCAGACTGA	AGTCAGGCTGCTGGCTATACACCA	down	5	2

Secondary structure

GGAAGATTTCATCAGTCAGGCTGCTGGCTATACACCAGGACTTATCTGGTCCTGGATATAACCACTGCCAGACTGAAAGGTGCTAA
-------------AGTCAGGCTGCTGGCTATACACCA 	2
-------------AGTCAGGCTGCTGGCTATACACC 	2
-------------AGTCAGGCTGCTGGCTATACA 	1
------------------------------------------------------GATATAACCACTGCCAGACT 	26
------------------------------------------------------GATATAACCACTGCCAGACTGAAA 	16
------------------------------------------------------GATATAACCACTGCCAGACTGAA 	23
------------------------------------------------------GATATAACCACTGCCAGACTGA 	295
------------------------------------------------------GATATAACCACTGCCAGACTG 	92
------------------------------------------------------GATATAACCACTGCCAGAC 	1

Overlaps with: MNEST032018
Overlaps with miRBase pre-miRNAs: mmu-mir-344d-1
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
20	Mus musculus	GSM539869	GATATAACCACTGCCAGACTGA	AGTTAGGCTGCTGGCTATACTCCA	down	4	2

Secondary structure

GAAGATTTCATCAGTTAGGCTGCTGGCTATACTCCAGGACTTACCTTGTCCTGGATATAACCACTGCCAGACTGAAAGGTGCTA
-----------------------------------------------------GATATAACCACTGCCAGACT 	26
-----------------------------------------------------GATATAACCACTGCCAGACTGAAA 	16
-----------------------------------------------------GATATAACCACTGCCAGACTGAA 	23
-----------------------------------------------------GATATAACCACTGCCAGACTGA 	295
-----------------------------------------------------GATATAACCACTGCCAGACTG 	92
-----------------------------------------------------GATATAACCACTGCCAGAC 	1

HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
21	Mus musculus	GSM527277-2110	GATATAACCACTGCCAGACTGA	AGTTAGGCTGCTGGCTATACTCCA	down	4	2

Secondary structure

GAAGATTTCATCAGTTAGGCTGCTGGCTATACTCCAGGACTTACCTTGTCCTGGATATAACCACTGCCAGACTGAAAGGTGCTA
---------------------------------------------------TGGATATAACCACTGCCAGACTGA 	2
---------------------------------------------------TGGATATAACCACTGCCAG 	1
----------------------------------------------------GGATATAACCACTGCCAGACTGA 	3
-----------------------------------------------------GATATAACCACTGCCAGACTG 	50
-----------------------------------------------------GATATAACCACTGCCAGACTGA 	1735
-----------------------------------------------------GATATAACCACTGCCAGACT 	38
-----------------------------------------------------GATATAACCACTGCCAGACTGAA 	14
------------------------------------------------------ATATAACCACTGCCAGACTGA 	4
-------------------------------------------------------TATAACCACTGCCAGACTGA 	3

HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
22	Mus musculus	GSM527277-2110	GATATAACCACTGCCAGACTGA	GTCTGGTTGCTGGCTATATTCCA	down	4	2

Secondary structure

AAGATTTCATTAGTCTGGTTGCTGGCTATATTCCAGGACTTATCTGGTCCTGGATATAACCACTGCCAGACTGAATGGTGCTA
------------------------------------------TCTGGTCCTGGATATAACCACTG 	1
--------------------------------------------------TGGATATAACCACTGCCAGACTGA 	2
--------------------------------------------------TGGATATAACCACTGCCAG 	1
---------------------------------------------------GGATATAACCACTGCCAGACTGA 	3
----------------------------------------------------GATATAACCACTGCCAGACTG 	50
----------------------------------------------------GATATAACCACTGCCAGACTGA 	1735
----------------------------------------------------GATATAACCACTGCCAGACT 	38
----------------------------------------------------GATATAACCACTGCCAGACTGAAT 	4
----------------------------------------------------GATATAACCACTGCCAGACTGAA 	14
-----------------------------------------------------ATATAACCACTGCCAGACTGA 	4
------------------------------------------------------TATAACCACTGCCAGACTGA 	3

Overlaps with: MNEST032019
Overlaps with miRBase pre-miRNAs: mmu-mir-344d-2
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
23	Mus musculus	GSM527277-2110	GATATAACCACTGCCAGACTGA	AGTCAGGCTGCTGGTGATTCTCCA	down	5	2

Secondary structure

ATCTGCAGGAGAAGATTTGATCAGTCAGGCTGCTGGTGATTCTCCAGGACTTATCTGGTCCTGGATATAACCACTGCCAGACTGAATGGTGCTAAAGAGAAGGG
-----------------------------------------------------TCTGGTCCTGGATATAACCACTG 	1
-------------------------------------------------------------TGGATATAACCACTGCCAGACTGA 	2
-------------------------------------------------------------TGGATATAACCACTGCCAG 	1
--------------------------------------------------------------GGATATAACCACTGCCAGACTGA 	3
---------------------------------------------------------------GATATAACCACTGCCAGACTG 	50
---------------------------------------------------------------GATATAACCACTGCCAGACTGA 	1735
---------------------------------------------------------------GATATAACCACTGCCAGACT 	38
---------------------------------------------------------------GATATAACCACTGCCAGACTGAAT 	4
---------------------------------------------------------------GATATAACCACTGCCAGACTGAA 	14
----------------------------------------------------------------ATATAACCACTGCCAGACTGA 	4
-----------------------------------------------------------------TATAACCACTGCCAGACTGA 	3

HuntMi prediction: not a miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
24	Mus musculus	GSM527277-2110	GATATAACCACTGCCAGACTGA	AGTCAGGCTAGTGGTTATACTCCA	down	2	2

Secondary structure

TGTTTGCAGGGGAAGATTTCATCAGTCAGGCTAGTGGTTATACTCCAGGACTTATCTGGTCCTGGATATAACCACTGCCAGACTGAATGGTGCTAAAGAGAAGGGA
--------------------ATCAGTCAGGCTAGTGGTTATAC 	1
----------------------CAGTCAGGCTAGTGGTTATACT 	1
-----------------------AGTCAGGCTAGTGGTTATACTCC 	25
-----------------------AGTCAGGCTAGTGGTTATACTCCA 	41
-----------------------AGTCAGGCTAGTGGTTATACTC 	11
---------------------------AGGCTAGTGGTTATACTCCAGG 	1
---------------------------AGGCTAGTGGTTATACTCCAGGACT 	1
---------------------------AGGCTAGTGGTTATACTCCAGGA 	1
---------------------------AGGCTAGTGGTTATACTCCAGGAC 	2
------------------------------------------------------TCTGGTCCTGGATATAACCACTG 	1
--------------------------------------------------------------TGGATATAACCACTGCCAGACTGA 	2
--------------------------------------------------------------TGGATATAACCACTGCCAG 	1
---------------------------------------------------------------GGATATAACCACTGCCAGACTGA 	3
----------------------------------------------------------------GATATAACCACTGCCAGACTG 	50
----------------------------------------------------------------GATATAACCACTGCCAGACTGA 	1735
----------------------------------------------------------------GATATAACCACTGCCAGACT 	38
----------------------------------------------------------------GATATAACCACTGCCAGACTGAAT 	4
----------------------------------------------------------------GATATAACCACTGCCAGACTGAA 	14
-----------------------------------------------------------------ATATAACCACTGCCAGACTGA 	4
------------------------------------------------------------------TATAACCACTGCCAGACTGA 	3

Overlaps with: MNEST032020
Overlaps with miRBase pre-miRNAs: mmu-mir-344d-3
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
25	Mus musculus	GSM527277-2110	GATATAACCACTGCCAGACTGA	AGTCAGGCTGCTGGCTATACACCA	down	5	2

Secondary structure

GGAAGATTTCATCAGTCAGGCTGCTGGCTATACACCAGGACTTATCTGGTCCTGGATATAACCACTGCCAGACTGAAAGGTGCTAA
-------------AGTCAGGCTGCTGGCTATACACCA 	1
-------------AGTCAGGCTGCTGGCTATACAC 	1
-----------------AGGCTGCTGGCTATACACCAG 	1
--------------------------------------------TCTGGTCCTGGATATAACCACTG 	1
----------------------------------------------------TGGATATAACCACTGCCAGACTGA 	2
----------------------------------------------------TGGATATAACCACTGCCAG 	1
-----------------------------------------------------GGATATAACCACTGCCAGACTGA 	3
------------------------------------------------------GATATAACCACTGCCAGACTG 	50
------------------------------------------------------GATATAACCACTGCCAGACTGA 	1735
------------------------------------------------------GATATAACCACTGCCAGACT 	38
------------------------------------------------------GATATAACCACTGCCAGACTGAA 	14
-------------------------------------------------------ATATAACCACTGCCAGACTGA 	4
--------------------------------------------------------TATAACCACTGCCAGACTGA 	3

Overlaps with: MNEST032018
Overlaps with miRBase pre-miRNAs: mmu-mir-344d-1
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
26	Mus musculus	GSM539867	GATATAACCACTGCCAGACTGA	AGTCAGGCTAGTGGTTATACTCCA	down	2	2

Secondary structure

TGTTTGCAGGGGAAGATTTCATCAGTCAGGCTAGTGGTTATACTCCAGGACTTATCTGGTCCTGGATATAACCACTGCCAGACTGAATGGTGCTAAAGAGAAGGGA
-----------------------AGTCAGGCTAGTGGTTATACT 	1
----------------------------------------------------------------GATATAACCACTGCCAGACTG 	9
----------------------------------------------------------------GATATAACCACTGCCAGACTGAA 	1
----------------------------------------------------------------GATATAACCACTGCCAGACTGA 	42
-----------------------------------------------------------------ATATAACCACTGCCAGACTGA 	2

Overlaps with: MNEST032020
Overlaps with miRBase pre-miRNAs: mmu-mir-344d-3
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
27	Mus musculus	GSM539867	GATATAACCACTGCCAGACTGA	AGTCAGGCTGCTGGCTATACACCA	down	5	2

Secondary structure

GGAAGATTTCATCAGTCAGGCTGCTGGCTATACACCAGGACTTATCTGGTCCTGGATATAACCACTGCCAGACTGAAAGGTGCTAA
------------------------------------------------------GATATAACCACTGCCAGACTG 	9
------------------------------------------------------GATATAACCACTGCCAGACTGAA 	1
------------------------------------------------------GATATAACCACTGCCAGACTGA 	42
-------------------------------------------------------ATATAACCACTGCCAGACTGA 	2

Overlaps with: MNEST032018
Overlaps with miRBase pre-miRNAs: mmu-mir-344d-1
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
28	Mus musculus	GSM539867	GATATAACCACTGCCAGACTGA	AGTTAGGCTGCTGGCTATACTCCA	down	4	2

Secondary structure

GAAGATTTCATCAGTTAGGCTGCTGGCTATACTCCAGGACTTACCTTGTCCTGGATATAACCACTGCCAGACTGAAAGGTGCTA
-----------------------------------------------------GATATAACCACTGCCAGACTG 	9
-----------------------------------------------------GATATAACCACTGCCAGACTGAA 	1
-----------------------------------------------------GATATAACCACTGCCAGACTGA 	42
------------------------------------------------------ATATAACCACTGCCAGACTGA 	2

HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
29	Mus musculus	GSM539867	GATATAACCACTGCCAGACTGA	GTCTGGTTGCTGGCTATATTCCA	down	4	2

Secondary structure

AAGATTTCATTAGTCTGGTTGCTGGCTATATTCCAGGACTTATCTGGTCCTGGATATAACCACTGCCAGACTGAATGGTGCTA
----------------------------------------------------GATATAACCACTGCCAGACTG 	9
----------------------------------------------------GATATAACCACTGCCAGACTGAA 	1
----------------------------------------------------GATATAACCACTGCCAGACTGA 	42
-----------------------------------------------------ATATAACCACTGCCAGACTGA 	2

Overlaps with: MNEST032019
Overlaps with miRBase pre-miRNAs: mmu-mir-344d-2
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
30	Mus musculus	GSM539867	GATATAACCACTGCCAGACTGA	AGTCAGGCTGCTGGTGATTCTCCA	down	5	2

Secondary structure

ATCTGCAGGAGAAGATTTGATCAGTCAGGCTGCTGGTGATTCTCCAGGACTTATCTGGTCCTGGATATAACCACTGCCAGACTGAATGGTGCTAAAGAGAAGGG
---------------------------------------------------------------GATATAACCACTGCCAGACTG 	9
---------------------------------------------------------------GATATAACCACTGCCAGACTGAA 	1
---------------------------------------------------------------GATATAACCACTGCCAGACTGA 	42
----------------------------------------------------------------ATATAACCACTGCCAGACTGA 	2

HuntMi prediction: not a miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
31	Mus musculus	GSM539854	GATATAACCACTGCCAGACTGA	AGTTAGGCTGCTGGCTATACTCCA	down	4	2

Secondary structure

GAAGATTTCATCAGTTAGGCTGCTGGCTATACTCCAGGACTTACCTTGTCCTGGATATAACCACTGCCAGACTGAAAGGTGCTA
-----------------------------------------------------GATATAACCACTGCCAGACTGA 	8
-----------------------------------------------------GATATAACCACTGCCAGACTG 	1

HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
32	Mus musculus	GSM539854	GATATAACCACTGCCAGACTGA	GTCTGGTTGCTGGCTATATTCCA	down	4	2

Secondary structure

AAGATTTCATTAGTCTGGTTGCTGGCTATATTCCAGGACTTATCTGGTCCTGGATATAACCACTGCCAGACTGAATGGTGCTA
----------------------------------------------------GATATAACCACTGCCAGACTGA 	8
----------------------------------------------------GATATAACCACTGCCAGACTG 	1

Overlaps with: MNEST032019
Overlaps with miRBase pre-miRNAs: mmu-mir-344d-2
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
33	Mus musculus	GSM539854	GATATAACCACTGCCAGACTGA	AGTCAGGCTGCTGGTGATTCTCCA	down	5	2

Secondary structure

ATCTGCAGGAGAAGATTTGATCAGTCAGGCTGCTGGTGATTCTCCAGGACTTATCTGGTCCTGGATATAACCACTGCCAGACTGAATGGTGCTAAAGAGAAGGG
---------------------------------------------------------------GATATAACCACTGCCAGACTGA 	8
---------------------------------------------------------------GATATAACCACTGCCAGACTG 	1

HuntMi prediction: not a miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
34	Mus musculus	GSM539854	GATATAACCACTGCCAGACTGA	AGTCAGGCTAGTGGTTATACTCCA	down	2	2

Secondary structure

TGTTTGCAGGGGAAGATTTCATCAGTCAGGCTAGTGGTTATACTCCAGGACTTATCTGGTCCTGGATATAACCACTGCCAGACTGAATGGTGCTAAAGAGAAGGGA
----------------------------------------------------------------GATATAACCACTGCCAGACTGA 	8
----------------------------------------------------------------GATATAACCACTGCCAGACTG 	1

Overlaps with: MNEST032020
Overlaps with miRBase pre-miRNAs: mmu-mir-344d-3
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
35	Mus musculus	GSM539854	GATATAACCACTGCCAGACTGA	AGTCAGGCTGCTGGCTATACACCA	down	5	2

Secondary structure

GGAAGATTTCATCAGTCAGGCTGCTGGCTATACACCAGGACTTATCTGGTCCTGGATATAACCACTGCCAGACTGAAAGGTGCTAA
------------------------------------------------------GATATAACCACTGCCAGACTGA 	8
------------------------------------------------------GATATAACCACTGCCAGACTG 	1

Overlaps with: MNEST032018
Overlaps with miRBase pre-miRNAs: mmu-mir-344d-1
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
36	Mus musculus	GSM527279-2112	GATATAACCACTGCCAGACTGA	AGTCAGGCTGCTGGCTATACACCA	down	5	2

Secondary structure

GGAAGATTTCATCAGTCAGGCTGCTGGCTATACACCAGGACTTATCTGGTCCTGGATATAACCACTGCCAGACTGAAAGGTGCTAA
-------------AGTCAGGCTGCTGGCTATACAC 	1
-------------AGTCAGGCTGCTGGCTATACACC 	1
-------------AGTCAGGCTGCTGGCTATAC 	1
----------------------------------------------------TGGATATAACCACTGCCAGAC 	3
------------------------------------------------------GATATAACCACTGCCAGACTG 	29
------------------------------------------------------GATATAACCACTGCCAGACT 	18
------------------------------------------------------GATATAACCACTGCCAGACTGA 	591
------------------------------------------------------GATATAACCACTGCCAGACTGAAA 	1
------------------------------------------------------GATATAACCACTGCCAGACTGAA 	5
-------------------------------------------------------ATATAACCACTGCCAGACTGA 	1
--------------------------------------------------------TATAACCACTGCCAGACTGA 	1

Overlaps with: MNEST032018
Overlaps with miRBase pre-miRNAs: mmu-mir-344d-1
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
37	Mus musculus	GSM527279-2112	GATATAACCACTGCCAGACTGA	AGTTAGGCTGCTGGCTATACTCCA	down	4	2

Secondary structure

GAAGATTTCATCAGTTAGGCTGCTGGCTATACTCCAGGACTTACCTTGTCCTGGATATAACCACTGCCAGACTGAAAGGTGCTA
---------------------------------------------------TGGATATAACCACTGCCAGAC 	3
-----------------------------------------------------GATATAACCACTGCCAGACTG 	29
-----------------------------------------------------GATATAACCACTGCCAGACT 	18
-----------------------------------------------------GATATAACCACTGCCAGACTGA 	591
-----------------------------------------------------GATATAACCACTGCCAGACTGAAA 	1
-----------------------------------------------------GATATAACCACTGCCAGACTGAA 	5
------------------------------------------------------ATATAACCACTGCCAGACTGA 	1
-------------------------------------------------------TATAACCACTGCCAGACTGA 	1

HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
38	Mus musculus	GSM527279-2112	GATATAACCACTGCCAGACTGA	GTCTGGTTGCTGGCTATATTCCA	down	4	2

Secondary structure

AAGATTTCATTAGTCTGGTTGCTGGCTATATTCCAGGACTTATCTGGTCCTGGATATAACCACTGCCAGACTGAATGGTGCTA
--------------------------------------------------TGGATATAACCACTGCCAGAC 	3
----------------------------------------------------GATATAACCACTGCCAGACTG 	29
----------------------------------------------------GATATAACCACTGCCAGACT 	18
----------------------------------------------------GATATAACCACTGCCAGACTGA 	591
----------------------------------------------------GATATAACCACTGCCAGACTGAA 	5
-----------------------------------------------------ATATAACCACTGCCAGACTGA 	1
------------------------------------------------------TATAACCACTGCCAGACTGAAT 	1
------------------------------------------------------TATAACCACTGCCAGACTGA 	1

Overlaps with: MNEST032019
Overlaps with miRBase pre-miRNAs: mmu-mir-344d-2
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
39	Mus musculus	GSM527279-2112	GATATAACCACTGCCAGACTGA	AGTCAGGCTGCTGGTGATTCTCCA	down	5	2

Secondary structure

ATCTGCAGGAGAAGATTTGATCAGTCAGGCTGCTGGTGATTCTCCAGGACTTATCTGGTCCTGGATATAACCACTGCCAGACTGAATGGTGCTAAAGAGAAGGG
-------------------------------------------------------------TGGATATAACCACTGCCAGAC 	3
---------------------------------------------------------------GATATAACCACTGCCAGACTG 	29
---------------------------------------------------------------GATATAACCACTGCCAGACT 	18
---------------------------------------------------------------GATATAACCACTGCCAGACTGA 	591
---------------------------------------------------------------GATATAACCACTGCCAGACTGAA 	5
----------------------------------------------------------------ATATAACCACTGCCAGACTGA 	1
-----------------------------------------------------------------TATAACCACTGCCAGACTGAAT 	1
-----------------------------------------------------------------TATAACCACTGCCAGACTGA 	1

HuntMi prediction: not a miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
40	Mus musculus	GSM527279-2112	GATATAACCACTGCCAGACTGA	AGTCAGGCTAGTGGTTATACTCCA	down	2	2

Secondary structure

TGTTTGCAGGGGAAGATTTCATCAGTCAGGCTAGTGGTTATACTCCAGGACTTATCTGGTCCTGGATATAACCACTGCCAGACTGAATGGTGCTAAAGAGAAGGGA
-----------------------AGTCAGGCTAGTGGTTATACTCC 	19
-----------------------AGTCAGGCTAGTGGTTATACT 	1
-----------------------AGTCAGGCTAGTGGTTATACTC 	4
-----------------------AGTCAGGCTAGTGGTTATACTCCA 	25
--------------------------------------------------------------TGGATATAACCACTGCCAGAC 	3
----------------------------------------------------------------GATATAACCACTGCCAGACTG 	29
----------------------------------------------------------------GATATAACCACTGCCAGACT 	18
----------------------------------------------------------------GATATAACCACTGCCAGACTGA 	591
----------------------------------------------------------------GATATAACCACTGCCAGACTGAA 	5
-----------------------------------------------------------------ATATAACCACTGCCAGACTGA 	1
------------------------------------------------------------------TATAACCACTGCCAGACTGAAT 	1
------------------------------------------------------------------TATAACCACTGCCAGACTGA 	1

Overlaps with: MNEST032020
Overlaps with miRBase pre-miRNAs: mmu-mir-344d-3
HuntMi prediction: true miRNA