miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

Please select library, species and/or miRNA sequence.

selected mature miRNA sequence: GATCAGGGCCTTTCTAAGTAGA

selected species: Mus musculus

8 records found

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
1	Mus musculus	GSM539877-5198	GATCAGGGCCTTTCTAAGTAGA	TATTTAGAATGGCGCTGATCTG	down	3	0

Secondary structure

ACAGGCTTTGTATGCAATGCCCTATTTAGAATGGCGCTGATCTGATGAATAAAAAAAAAATGATCAGGGCCTTTCTAAGTAGAGTAAGGCTTACCAACTTCT
----------------------TATTTAGAATGGCGCTGATCTGAT 	9
----------------------TATTTAGAATGGCGCTGAT 	68
----------------------TATTTAGAATGGCGCTGATCTG 	771
----------------------TATTTAGAATGGCGCTGATCT 	565
----------------------TATTTAGAATGGCGCTGATC 	95
----------------------TATTTAGAATGGCGCTGATCTGA 	69
-----------------------ATTTAGAATGGCGCTGATCT 	1
---------------------------------------------------------AAATGATCAGGGCCTTTCTAAGTAGA 	2
----------------------------------------------------------AATGATCAGGGCCTTTCTAA 	1
-----------------------------------------------------------ATGATCAGGGCCTTTCTAAGTAGA 	1
------------------------------------------------------------TGATCAGGGCCTTTCTAAGTAGA 	995
------------------------------------------------------------TGATCAGGGCCTTTCTAAGTAG 	58
------------------------------------------------------------TGATCAGGGCCTTTCTAAGTAGAG 	9
------------------------------------------------------------TGATCAGGGCCTTTCTAAGTA 	10
------------------------------------------------------------TGATCAGGGCCTTTCTAAGT 	16
------------------------------------------------------------TGATCAGGGCCTTTCTAAG 	5
-------------------------------------------------------------GATCAGGGCCTTTCTAAGTAGA 	1856
-------------------------------------------------------------GATCAGGGCCTTTCTAAGTAG 	187
-------------------------------------------------------------GATCAGGGCCTTTCTAAGTA 	251
-------------------------------------------------------------GATCAGGGCCTTTCTAAGT 	40
-------------------------------------------------------------GATCAGGGCCTTTCTAAGTAGAG 	13
-------------------------------------------------------------GATCAGGGCCTTTCTAAGTAGAGT 	1
--------------------------------------------------------------ATCAGGGCCTTTCTAAGTAGA 	19
--------------------------------------------------------------ATCAGGGCCTTTCTAAGTA 	2
--------------------------------------------------------------ATCAGGGCCTTTCTAAGTAG 	3
---------------------------------------------------------------TCAGGGCCTTTCTAAGTAGA 	3
----------------------------------------------------------------CAGGGCCTTTCTAAGTAGA 	1
-----------------------------------------------------------------------------------GTAAGGCTTACCAACTTCT 	1

HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
2	Mus musculus	GSM539877-5198	GATCAGGGCCTTTCTAAGTAGA	TATTTAGAATGGTGCTGATCTG	down	3	0

Secondary structure

TATGCAATGCCCTATTTAGAATGGTGCTGATCTGATGAAATAAAAAATTGATCAGGGCCTTTCTAAGTAGAGTAAGGCTT
------------TATTTAGAATGGTGCTGATC 	14
------------TATTTAGAATGGTGCTGATCTGA 	24
------------TATTTAGAATGGTGCTGATCTGAT 	4
------------TATTTAGAATGGTGCTGATCT 	53
------------TATTTAGAATGGTGCTGATCTG 	197
------------TATTTAGAATGGTGCTGAT 	7
----------------------------------------------ATTGATCAGGGCCTTTCTAAG 	1
-----------------------------------------------TTGATCAGGGCCTTTCTAAGTAGA 	3
------------------------------------------------TGATCAGGGCCTTTCTAAGTAGA 	995
------------------------------------------------TGATCAGGGCCTTTCTAAGTAG 	58
------------------------------------------------TGATCAGGGCCTTTCTAAGTAGAG 	9
------------------------------------------------TGATCAGGGCCTTTCTAAGTA 	10
------------------------------------------------TGATCAGGGCCTTTCTAAGT 	16
------------------------------------------------TGATCAGGGCCTTTCTAAG 	5
-------------------------------------------------GATCAGGGCCTTTCTAAGTAGA 	1856
-------------------------------------------------GATCAGGGCCTTTCTAAGTAG 	187
-------------------------------------------------GATCAGGGCCTTTCTAAGTA 	251
-------------------------------------------------GATCAGGGCCTTTCTAAGT 	40
-------------------------------------------------GATCAGGGCCTTTCTAAGTAGAG 	13
-------------------------------------------------GATCAGGGCCTTTCTAAGTAGAGT 	1
--------------------------------------------------ATCAGGGCCTTTCTAAGTAGA 	19
--------------------------------------------------ATCAGGGCCTTTCTAAGTA 	2
--------------------------------------------------ATCAGGGCCTTTCTAAGTAG 	3
---------------------------------------------------TCAGGGCCTTTCTAAGTAGA 	3
----------------------------------------------------CAGGGCCTTTCTAAGTAGA 	1

HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
3	Mus musculus	GSM539877-5198	GATCAGGGCCTTTCTAAGTAGA	TATTTAGAATGGCACTGATGTG	down	4	0

Secondary structure

AAAGGCTTTGTATGCAGTGCCCTATTTAGAATGGCACTGATGTGATAAAATAAAAAATTGATCAGGGCCTTTCTAAGTAGAGTAAGGCTTACCACCTTCT
----------------------TATTTAGAATGGCACTGAT 	27
----------------------TATTTAGAATGGCACTGATGTGATA 	4
----------------------TATTTAGAATGGCACTGATGT 	83
----------------------TATTTAGAATGGCACTGATGTGAT 	51
----------------------TATTTAGAATGGCACTGATG 	13
----------------------TATTTAGAATGGCACTGATGTGA 	218
----------------------TATTTAGAATGGCACTGATGTG 	20
-----------------------ATTTAGAATGGCACTGATGTGAT 	1
------------------------TTTAGAATGGCACTGATGTGATA 	1
--------------------------------------------------------ATTGATCAGGGCCTTTCTAAG 	1
---------------------------------------------------------TTGATCAGGGCCTTTCTAAGTAGA 	3
----------------------------------------------------------TGATCAGGGCCTTTCTAAGTAGA 	995
----------------------------------------------------------TGATCAGGGCCTTTCTAAGTAG 	58
----------------------------------------------------------TGATCAGGGCCTTTCTAAGTAGAG 	9
----------------------------------------------------------TGATCAGGGCCTTTCTAAGTA 	10
----------------------------------------------------------TGATCAGGGCCTTTCTAAGT 	16
----------------------------------------------------------TGATCAGGGCCTTTCTAAG 	5
-----------------------------------------------------------GATCAGGGCCTTTCTAAGTAGA 	1856
-----------------------------------------------------------GATCAGGGCCTTTCTAAGTAG 	187
-----------------------------------------------------------GATCAGGGCCTTTCTAAGTA 	251
-----------------------------------------------------------GATCAGGGCCTTTCTAAGT 	40
-----------------------------------------------------------GATCAGGGCCTTTCTAAGTAGAG 	13
-----------------------------------------------------------GATCAGGGCCTTTCTAAGTAGAGT 	1
------------------------------------------------------------ATCAGGGCCTTTCTAAGTAGA 	19
------------------------------------------------------------ATCAGGGCCTTTCTAAGTA 	2
------------------------------------------------------------ATCAGGGCCTTTCTAAGTAG 	3
-------------------------------------------------------------TCAGGGCCTTTCTAAGTAGA 	3
--------------------------------------------------------------CAGGGCCTTTCTAAGTAGA 	1

Overlaps with: MNEST032090 MNEST032091
Overlaps with miRBase pre-miRNAs: mmu-mir-465a
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
4	Mus musculus	GSM539878	GATCAGGGCCTTTCTAAGTAGA	TATTTAGAATGGTGCTGATCTG	down	3	0

Secondary structure

TATGCAATGCCCTATTTAGAATGGTGCTGATCTGATGAAATAAAAAATTGATCAGGGCCTTTCTAAGTAGAGTAAGGCTT
------------TATTTAGAATGGTGCTGATCTGAT 	1
------------TATTTAGAATGGTGCTGATCTG 	6
------------TATTTAGAATGGTGCTGATCT 	2
-----------------------------------------------TTGATCAGGGCCTTTCTAAGTAGA 	1
------------------------------------------------TGATCAGGGCCTTTCTAAGTAGA 	60
------------------------------------------------TGATCAGGGCCTTTCTAAGTA 	1
------------------------------------------------TGATCAGGGCCTTTCTAAGTAG 	7
-------------------------------------------------GATCAGGGCCTTTCTAAGTAGA 	98
-------------------------------------------------GATCAGGGCCTTTCTAAGTAG 	9
-------------------------------------------------GATCAGGGCCTTTCTAAGTA 	8
-------------------------------------------------GATCAGGGCCTTTCTAAGT 	3
-------------------------------------------------GATCAGGGCCTTTCTAAGTAGAG 	1
--------------------------------------------------ATCAGGGCCTTTCTAAGTAGA 	1

HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
5	Mus musculus	GSM539878	GATCAGGGCCTTTCTAAGTAGA	TATTTAGAATGGCACTGATGTG	down	4	0

Secondary structure

AAAGGCTTTGTATGCAGTGCCCTATTTAGAATGGCACTGATGTGATAAAATAAAAAATTGATCAGGGCCTTTCTAAGTAGAGTAAGGCTTACCACCTTCT
----------------------TATTTAGAATGGCACTGATGTG 	3
----------------------TATTTAGAATGGCACTGATGT 	2
----------------------TATTTAGAATGGCACTGATGTGAT 	4
----------------------TATTTAGAATGGCACTGATGTGA 	14
----------------------TATTTAGAATGGCACTGATG 	1
---------------------------------------------------------TTGATCAGGGCCTTTCTAAGTAGA 	1
----------------------------------------------------------TGATCAGGGCCTTTCTAAGTAGA 	60
----------------------------------------------------------TGATCAGGGCCTTTCTAAGTA 	1
----------------------------------------------------------TGATCAGGGCCTTTCTAAGTAG 	7
-----------------------------------------------------------GATCAGGGCCTTTCTAAGTAGA 	98
-----------------------------------------------------------GATCAGGGCCTTTCTAAGTAG 	9
-----------------------------------------------------------GATCAGGGCCTTTCTAAGTA 	8
-----------------------------------------------------------GATCAGGGCCTTTCTAAGT 	3
-----------------------------------------------------------GATCAGGGCCTTTCTAAGTAGAG 	1
------------------------------------------------------------ATCAGGGCCTTTCTAAGTAGA 	1

Overlaps with: MNEST032090 MNEST032091
Overlaps with miRBase pre-miRNAs: mmu-mir-465a
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
6	Mus musculus	GSM539878	GATCAGGGCCTTTCTAAGTAGA	TATTTAGAATGGCGCTGATCTG	down	3	0

Secondary structure

ACAGGCTTTGTATGCAATGCCCTATTTAGAATGGCGCTGATCTGATGAATAAAAAAAAAATGATCAGGGCCTTTCTAAGTAGAGTAAGGCTTACCAACTTCT
----------------------TATTTAGAATGGCGCTGATCTG 	36
----------------------TATTTAGAATGGCGCTGATCT 	13
----------------------TATTTAGAATGGCGCTGATC 	4
----------------------TATTTAGAATGGCGCTGATCTGA 	2
----------------------TATTTAGAATGGCGCTGAT 	1
------------------------------------------------------------TGATCAGGGCCTTTCTAAGTAGA 	60
------------------------------------------------------------TGATCAGGGCCTTTCTAAGTA 	1
------------------------------------------------------------TGATCAGGGCCTTTCTAAGTAG 	7
-------------------------------------------------------------GATCAGGGCCTTTCTAAGTAGA 	98
-------------------------------------------------------------GATCAGGGCCTTTCTAAGTAG 	9
-------------------------------------------------------------GATCAGGGCCTTTCTAAGTA 	8
-------------------------------------------------------------GATCAGGGCCTTTCTAAGT 	3
-------------------------------------------------------------GATCAGGGCCTTTCTAAGTAGAG 	1
--------------------------------------------------------------ATCAGGGCCTTTCTAAGTAGA 	1

HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
7	Mus musculus	GSM539873	GATCAGGGCCTTTCTAAGTAGA	TATTTAGAATGGTGCTGATCTG	down	3	0

Secondary structure

TATGCAATGCCCTATTTAGAATGGTGCTGATCTGATGAAATAAAAAATTGATCAGGGCCTTTCTAAGTAGAGTAAGGCTT
------------TATTTAGAATGGTGCTGATCTGA 	1
------------TATTTAGAATGGTGCTGATCTG 	3
------------TATTTAGAATGGTGCTGATCT 	3
------------TATTTAGAATGGTGCTGATC 	1
------------------------------------------------TGATCAGGGCCTTTCTAAGTAGA 	29
------------------------------------------------TGATCAGGGCCTTTCTAAGTAG 	2
------------------------------------------------TGATCAGGGCCTTTCTAAGTA 	1
------------------------------------------------TGATCAGGGCCTTTCTAAGT 	2
-------------------------------------------------GATCAGGGCCTTTCTAAGTAGA 	37
-------------------------------------------------GATCAGGGCCTTTCTAAGTAG 	4
-------------------------------------------------GATCAGGGCCTTTCTAAGTA 	2

HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
8	Mus musculus	GSM539873	GATCAGGGCCTTTCTAAGTAGA	TATTTAGAATGGCACTGATGTG	down	4	0

Secondary structure

AAAGGCTTTGTATGCAGTGCCCTATTTAGAATGGCACTGATGTGATAAAATAAAAAATTGATCAGGGCCTTTCTAAGTAGAGTAAGGCTTACCACCTTCT
----------------------TATTTAGAATGGCACTGAT 	6
----------------------TATTTAGAATGGCACTGATGT 	4
----------------------TATTTAGAATGGCACTGATGTGAT 	2
----------------------TATTTAGAATGGCACTGATGTGA 	4
----------------------------------------------------------TGATCAGGGCCTTTCTAAGTAGA 	29
----------------------------------------------------------TGATCAGGGCCTTTCTAAGTAG 	2
----------------------------------------------------------TGATCAGGGCCTTTCTAAGTA 	1
----------------------------------------------------------TGATCAGGGCCTTTCTAAGT 	2
-----------------------------------------------------------GATCAGGGCCTTTCTAAGTAGA 	37
-----------------------------------------------------------GATCAGGGCCTTTCTAAGTAG 	4
-----------------------------------------------------------GATCAGGGCCTTTCTAAGTA 	2

Overlaps with: MNEST032090 MNEST032091
Overlaps with miRBase pre-miRNAs: mmu-mir-465a
HuntMi prediction: true miRNA