miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: GCAGGACAGGCAGAAGTGGAT

selected species: Homo sapiens



2 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Homo sapiens GSM569185 GCAGGACAGGCAGAAGTGGAT CCACTTATGCCTGCCCTGCCC down 3 0


Secondary structure

GACTCCTCATGGCCTCACTTTTCCACTTATGCCTGCCCTGCCCCTCGAATCTGCTCCACGATTTGGGCAGGACAGGCAGAAGTGGATAAGTGAGGACACTTCTCAC
--------------------------------------------------------------TTGGGCAGGACAGGCAGAAGTGG 	1
------------------------------------------------------------------GCAGGACAGGCAGAAGTGGAT 	5
------------------------------------------------------------------GCAGGACAGGCAGAAGTGGA 	1

Overlaps with: MNEST029633
Overlaps with miRBase pre-miRNAs: hsa-mir-4436a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Homo sapiens GSM569188 GCAGGACAGGCAGAAGTGGAT CCACTTATGCCTGCCCTGCCC down 3 0


Secondary structure

GACTCCTCATGGCCTCACTTTTCCACTTATGCCTGCCCTGCCCCTCGAATCTGCTCCACGATTTGGGCAGGACAGGCAGAAGTGGATAAGTGAGGACACTTCTCAC
-------------------------------------------------------------TTTGGGCAGGACAGGCAGAA 	1
-------------------------------------------------------------TTTGGGCAGGACAGGCAGAAGT 	1
--------------------------------------------------------------TTGGGCAGGACAGGCAGAA 	4
--------------------------------------------------------------TTGGGCAGGACAGGCAGAAGTG 	2
-----------------------------------------------------------------GGCAGGACAGGCAGAAGTGGAT 	1
------------------------------------------------------------------GCAGGACAGGCAGAAGTGGAT 	26
------------------------------------------------------------------GCAGGACAGGCAGAAGTGGA 	4
-------------------------------------------------------------------CAGGACAGGCAGAAGTGGAT 	2

Overlaps with: MNEST029633
Overlaps with miRBase pre-miRNAs: hsa-mir-4436a
HuntMi prediction: true miRNA