miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: GCAGTCCACGGGCATATACAC

selected species: Mus musculus



5 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Mus musculus GSM527274-2107 GCAGTCCACGGGCATATACACT CGTATGTGCCTTTGGACTACAT down 3 0


Secondary structure

CCCTGGTGTGAGCGTATGTGCCTTTGGACTACATCGTGAACGCAGCACCATGCAGTCCACGGGCATATACACTTGCCTCAAG
------------CGTATGTGCCTTTGGACTACAT 	1
------------CGTATGTGCCTTTGGACTACA 	1
-------------GTATGTGCCTTTGGACTACA 	2
--------------TATGTGCCTTTGGACTACATCGT 	5
--------------TATGTGCCTTTGGACTACATCG 	11
--------------TATGTGCCTTTGGACTACAT 	2
--------------TATGTGCCTTTGGACTACATC 	2
------------------------------------------------CATGCAGTCCACGGGCATATACA 	2
-------------------------------------------------ATGCAGTCCACGGGCATATACAC 	1
-------------------------------------------------ATGCAGTCCACGGGCATATAC 	3
--------------------------------------------------TGCAGTCCACGGGCATATACACT 	2
--------------------------------------------------TGCAGTCCACGGGCATATACAC 	1
--------------------------------------------------TGCAGTCCACGGGCATATACA 	1
---------------------------------------------------GCAGTCCACGGGCATATACAC 	12
---------------------------------------------------GCAGTCCACGGGCATATAC 	3
---------------------------------------------------GCAGTCCACGGGCATATACA 	2
---------------------------------------------------GCAGTCCACGGGCATATACACT 	32
----------------------------------------------------CAGTCCACGGGCATATACACT 	3
----------------------------------------------------CAGTCCACGGGCATATACACTT 	5
-----------------------------------------------------AGTCCACGGGCATATACACT 	1
------------------------------------------------------GTCCACGGGCATATACACT 	5



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Mus musculus GSM527280 GCAGTCCACGGGCATATACACT CGTATGTGCCTTTGGACTACAT down 3 0


Secondary structure

CCCTGGTGTGAGCGTATGTGCCTTTGGACTACATCGTGAACGCAGCACCATGCAGTCCACGGGCATATACACTTGCCTCAAG
-------------GTATGTGCCTTTGGACTACATCG 	1
-------------GTATGTGCCTTTGGACTACAT 	2
--------------TATGTGCCTTTGGACTACATCG 	7
--------------TATGTGCCTTTGGACTACATCGT 	2
--------------TATGTGCCTTTGGACTACATC 	1
-------------------------------------------------ATGCAGTCCACGGGCATATACAC 	1
-------------------------------------------------ATGCAGTCCACGGGCATATACACT 	2
-------------------------------------------------ATGCAGTCCACGGGCATATACA 	1
--------------------------------------------------TGCAGTCCACGGGCATATACAC 	2
---------------------------------------------------GCAGTCCACGGGCATATACACT 	18
---------------------------------------------------GCAGTCCACGGGCATATACAC 	5



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Mus musculus GSM527276 GCAGTCCACGGGCATATACACT CGTATGTGCCTTTGGACTACAT down 3 0


Secondary structure

CCCTGGTGTGAGCGTATGTGCCTTTGGACTACATCGTGAACGCAGCACCATGCAGTCCACGGGCATATACACTTGCCTCAAG
------------CGTATGTGCCTTTGGACTACAT 	1
------------CGTATGTGCCTTTGGACTAC 	1
-------------GTATGTGCCTTTGGACTACATCG 	2
-------------GTATGTGCCTTTGGACTACAT 	2
--------------TATGTGCCTTTGGACTACATCG 	12
--------------TATGTGCCTTTGGACTACAT 	2
--------------TATGTGCCTTTGGACTACATC 	4
-------------------------------------------------ATGCAGTCCACGGGCATATACAC 	4
-------------------------------------------------ATGCAGTCCACGGGCATATACA 	2
-------------------------------------------------ATGCAGTCCACGGGCATATACACT 	2
-------------------------------------------------ATGCAGTCCACGGGCATAT 	1
-------------------------------------------------ATGCAGTCCACGGGCATATAC 	2
--------------------------------------------------TGCAGTCCACGGGCATATAC 	1
--------------------------------------------------TGCAGTCCACGGGCATATACAC 	3
--------------------------------------------------TGCAGTCCACGGGCATATACA 	3
---------------------------------------------------GCAGTCCACGGGCATATAC 	3
---------------------------------------------------GCAGTCCACGGGCATATACACTT 	2
---------------------------------------------------GCAGTCCACGGGCATATACA 	3
---------------------------------------------------GCAGTCCACGGGCATATACACT 	34
---------------------------------------------------GCAGTCCACGGGCATATACAC 	20
----------------------------------------------------CAGTCCACGGGCATATACACTT 	2
----------------------------------------------------CAGTCCACGGGCATATACAC 	1
----------------------------------------------------CAGTCCACGGGCATATACA 	1
----------------------------------------------------CAGTCCACGGGCATATACACT 	1
-----------------------------------------------------AGTCCACGGGCATATACAC 	1
-----------------------------------------------------AGTCCACGGGCATATACACT 	1
------------------------------------------------------GTCCACGGGCATATACACT 	17



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Mus musculus GSM539867 GCAGTCCACGGGCATATACAC GTATGTGCCTTTGGACTACAT down 3 0


Secondary structure

CCTGGTGTGAGCGTATGTGCCTTTGGACTACATCGTGAACGCAGCACCATGCAGTCCACGGGCATATACACTTGCCTCAA
-----------CGTATGTGCCTTTGGACTACAT 	2
------------GTATGTGCCTTTGGACTACATCGT 	3
------------GTATGTGCCTTTGGACTACAT 	6
-------------TATGTGCCTTTGGACTACATCGT 	11
-------------TATGTGCCTTTGGACTACATCG 	9
-------------TATGTGCCTTTGGACTACATC 	2
-------------TATGTGCCTTTGGACTACA 	1
---------------TGTGCCTTTGGACTACATCGTG 	1
-----------------------------------------------CATGCAGTCCACGGGCATATACA 	4
-----------------------------------------------CATGCAGTCCACGGGCATATACAC 	4
-----------------------------------------------CATGCAGTCCACGGGCATATAC 	3
------------------------------------------------ATGCAGTCCACGGGCATATACACT 	4
------------------------------------------------ATGCAGTCCACGGGCATATACAC 	16
------------------------------------------------ATGCAGTCCACGGGCATATACA 	9
------------------------------------------------ATGCAGTCCACGGGCATATAC 	3
-------------------------------------------------TGCAGTCCACGGGCATATACACT 	1
-------------------------------------------------TGCAGTCCACGGGCATATACAC 	7
-------------------------------------------------TGCAGTCCACGGGCATATAC 	1
--------------------------------------------------GCAGTCCACGGGCATATACACTT 	8
--------------------------------------------------GCAGTCCACGGGCATATACACT 	32
--------------------------------------------------GCAGTCCACGGGCATATACAC 	100
--------------------------------------------------GCAGTCCACGGGCATATACA 	11
---------------------------------------------------CAGTCCACGGGCATATACACTT 	15
---------------------------------------------------CAGTCCACGGGCATATACACT 	9
---------------------------------------------------CAGTCCACGGGCATATACAC 	14
----------------------------------------------------AGTCCACGGGCATATACACTT 	1
----------------------------------------------------AGTCCACGGGCATATACACT 	1



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Mus musculus GSM527279-2112 GCAGTCCACGGGCATATACACT CGTATGTGCCTTTGGACTACAT down 3 0


Secondary structure

CCCTGGTGTGAGCGTATGTGCCTTTGGACTACATCGTGAACGCAGCACCATGCAGTCCACGGGCATATACACTTGCCTCAAG
------------CGTATGTGCCTTTGGACTACAT 	2
-------------GTATGTGCCTTTGGACTACAT 	1
-------------GTATGTGCCTTTGGACTACA 	2
--------------TATGTGCCTTTGGACTACATCGT 	1
--------------TATGTGCCTTTGGACTACATCG 	32
--------------TATGTGCCTTTGGACTACAT 	7
--------------TATGTGCCTTTGGACTACATC 	5
---------------ATGTGCCTTTGGACTACATC 	1
---------------ATGTGCCTTTGGACTACAT 	1
------------------------------------------------CATGCAGTCCACGGGCATATACA 	2
------------------------------------------------CATGCAGTCCACGGGCATAT 	2
-------------------------------------------------ATGCAGTCCACGGGCATATACAC 	4
-------------------------------------------------ATGCAGTCCACGGGCATATACA 	3
--------------------------------------------------TGCAGTCCACGGGCATATACAC 	2
--------------------------------------------------TGCAGTCCACGGGCATATACA 	3
---------------------------------------------------GCAGTCCACGGGCATATACAC 	30
---------------------------------------------------GCAGTCCACGGGCATATAC 	2
---------------------------------------------------GCAGTCCACGGGCATATACACTT 	1
---------------------------------------------------GCAGTCCACGGGCATATACA 	3
---------------------------------------------------GCAGTCCACGGGCATATACACT 	54
----------------------------------------------------CAGTCCACGGGCATATACACT 	2
----------------------------------------------------CAGTCCACGGGCATATACACTT 	1
-----------------------------------------------------AGTCCACGGGCATATACACT 	4
-----------------------------------------------------AGTCCACGGGCATATACAC 	1
------------------------------------------------------GTCCACGGGCATATACACT 	10



HuntMi prediction: true miRNA