miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



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selected mature miRNA sequence: GCAGTCCATGGGCATATACAC

selected species: Homo sapiens



4 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Homo sapiens GSM569185 GCAGTCCATGGGCATATACAC GTATGTGCCTTTGGACTACAT down 3 0


Secondary structure

CCTGGCGTGAGGGTATGTGCCTTTGGACTACATCGTGGAAGCCAGCACCATGCAGTCCATGGGCATATACACTTGCCTCAA
------------GTATGTGCCTTTGGACTACATC 	1
-------------TATGTGCCTTTGGACTACATCGT 	1
---------------------------------------------------GCAGTCCATGGGCATATACAC 	5
---------------------------------------------------GCAGTCCATGGGCATATACACT 	1


Overlaps with: MNEST033387
Overlaps with miRBase pre-miRNAs: mml-mir-455 cfa-mir-455 bta-mir-455 ptr-mir-455 ppy-mir-455 hsa-mir-455 ggo-mir-455
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Homo sapiens GSM337570 GCAGTCCATGGGCATATACAC GTATGTGCCTTTGGACTACAT down 3 0


Secondary structure

CCTGGCGTGAGGGTATGTGCCTTTGGACTACATCGTGGAAGCCAGCACCATGCAGTCCATGGGCATATACACTTGCCTCAA
-------------------------------------------------ATGCAGTCCATGGGCATATACAC 	2
-------------------------------------------------ATGCAGTCCATGGGCATATAC 	2
--------------------------------------------------TGCAGTCCATGGGCATATACAC 	2
---------------------------------------------------GCAGTCCATGGGCATATACAC 	8
---------------------------------------------------GCAGTCCATGGGCATATAC 	3


Overlaps with: MNEST033387
Overlaps with miRBase pre-miRNAs: mml-mir-455 cfa-mir-455 bta-mir-455 ptr-mir-455 ppy-mir-455 hsa-mir-455 ggo-mir-455
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Homo sapiens GSM494812_HL60 GCAGTCCATGGGCATATACAC GTATGTGCCTTTGGACTACAT down 3 0


Secondary structure

CCTGGCGTGAGGGTATGTGCCTTTGGACTACATCGTGGAAGCCAGCACCATGCAGTCCATGGGCATATACACTTGCCTCAA
------------GTATGTGCCTTTGGACTACAT 	4
------------GTATGTGCCTTTGGACTACATCG 	1
------------GTATGTGCCTTTGGACTACATCGT 	1
-------------TATGTGCCTTTGGACTACATCG 	2
-------------TATGTGCCTTTGGACTACATCGTG 	1
--------------------------------------------------TGCAGTCCATGGGCATATACAC 	1
---------------------------------------------------GCAGTCCATGGGCATATACAC 	7


Overlaps with: MNEST033387
Overlaps with miRBase pre-miRNAs: mml-mir-455 cfa-mir-455 bta-mir-455 ptr-mir-455 ppy-mir-455 hsa-mir-455 ggo-mir-455
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Homo sapiens GSM531975 GCAGTCCATGGGCATATACACT GGTATGTGCCTTTGGACTACAT down 3 0


Secondary structure

CCCTGGCGTGAGGGTATGTGCCTTTGGACTACATCGTGGAAGCCAGCACCATGCAGTCCATGGGCATATACACTTGCCTCAAG
-------------GTATGTGCCTTTGGACTACATCGT 	35
-------------GTATGTGCCTTTGGACTACATCG 	47
-------------GTATGTGCCTTTGGACTACATC 	29
-------------GTATGTGCCTTTGGACTACAT 	145
-------------GTATGTGCCTTTGGACTACA 	11
--------------TATGTGCCTTTGGACTACATCGT 	65
--------------TATGTGCCTTTGGACTACATCG 	207
--------------TATGTGCCTTTGGACTACATC 	100
--------------TATGTGCCTTTGGACTACAT 	20
--------------TATGTGCCTTTGGACTACA 	16
--------------TATGTGCCTTTGGACTACATCGTG 	5
---------------ATGTGCCTTTGGACTACATCGT 	4
---------------ATGTGCCTTTGGACTACATCG 	5
---------------ATGTGCCTTTGGACTACAT 	1
----------------TGTGCCTTTGGACTACATCGTG 	8
----------------TGTGCCTTTGGACTACATCGT 	4
----------------TGTGCCTTTGGACTACATC 	2
----------------TGTGCCTTTGGACTACATCG 	1
-----------------GTGCCTTTGGACTACATCGT 	1
-------------------------------------------------CATGCAGTCCATGGGCATATAC 	5
-------------------------------------------------CATGCAGTCCATGGGCATATACA 	2
-------------------------------------------------CATGCAGTCCATGGGCATATA 	2
--------------------------------------------------ATGCAGTCCATGGGCATATACACT 	12
--------------------------------------------------ATGCAGTCCATGGGCATATACAC 	75
--------------------------------------------------ATGCAGTCCATGGGCATATACA 	157
--------------------------------------------------ATGCAGTCCATGGGCATATAC 	61
--------------------------------------------------ATGCAGTCCATGGGCATATA 	18
--------------------------------------------------ATGCAGTCCATGGGCATAT 	12
---------------------------------------------------TGCAGTCCATGGGCATATACAC 	16
---------------------------------------------------TGCAGTCCATGGGCATATACA 	22
---------------------------------------------------TGCAGTCCATGGGCATATACACT 	5
---------------------------------------------------TGCAGTCCATGGGCATATAC 	5
----------------------------------------------------GCAGTCCATGGGCATATACACTT 	30
----------------------------------------------------GCAGTCCATGGGCATATACACT 	840
----------------------------------------------------GCAGTCCATGGGCATATACAC 	320
----------------------------------------------------GCAGTCCATGGGCATATACA 	333
----------------------------------------------------GCAGTCCATGGGCATATAC 	52
-----------------------------------------------------CAGTCCATGGGCATATACACTT 	82
-----------------------------------------------------CAGTCCATGGGCATATACACT 	210
-----------------------------------------------------CAGTCCATGGGCATATACAC 	16
-----------------------------------------------------CAGTCCATGGGCATATACA 	5
------------------------------------------------------AGTCCATGGGCATATACACT 	8
------------------------------------------------------AGTCCATGGGCATATACAC 	2
------------------------------------------------------AGTCCATGGGCATATACACTT 	2


Overlaps with: MNEST034103
Overlaps with miRBase pre-miRNAs: ssc-mir-455 mml-mir-455 cfa-mir-455 bta-mir-455 ptr-mir-455 ppy-mir-455 hsa-mir-455 ggo-mir-455
HuntMi prediction: true miRNA