miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: GCAGTCCATGGGCATATACAC

selected species: Sus scrofa



1 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Sus scrofa GSM636849 GCAGTCCATGGGCATATACAC GTATGTGCCTTTGGACTACAT down 3 0


Secondary structure

CCTGGCGTGAGGGTATGTGCCTTTGGACTACATCGTGGAAGCCAGCACCATGCAGTCCATGGGCATATACACTTGCCTCAA
-------------TATGTGCCTTTGGACTACATCG 	4
-------------TATGTGCCTTTGGACTACATCGT 	1
-------------------------------------------------ATGCAGTCCATGGGCATATACA 	1
-------------------------------------------------ATGCAGTCCATGGGCATATACAC 	1
-------------------------------------------------ATGCAGTCCATGGGCATATAC 	2
--------------------------------------------------TGCAGTCCATGGGCATATACAC 	1
---------------------------------------------------GCAGTCCATGGGCATATACACT 	3
---------------------------------------------------GCAGTCCATGGGCATATACA 	1
---------------------------------------------------GCAGTCCATGGGCATATACAC 	8
----------------------------------------------------CAGTCCATGGGCATATACACTT 	1
-----------------------------------------------------AGTCCATGGGCATATACACT 	1
-----------------------------------------------------AGTCCATGGGCATATACAC 	2

Overlaps with: MNEST033387
Overlaps with miRBase pre-miRNAs: mml-mir-455 cfa-mir-455 bta-mir-455 ptr-mir-455 ppy-mir-455 hsa-mir-455 ggo-mir-455
HuntMi prediction: true miRNA