miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



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selected mature miRNA sequence: GCCAAACTCGGAAATTGTCTGC

selected species: Caenorhabditis elegans



2 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Caenorhabditis elegans GSM297751-9445 GCCAAACTCGGAAATTGTCTGC TGACAATTTCCGAGTTAGGCCA down 2 0


Secondary structure

GTGTGTAGGATTTTCGAAATTTTCCAAAGGGTAGGATACCGTGAACGGCGGCTGACAATTTCCGAGTTAGGCCACTCTTATAATCAGTGGCCAAACTCGGAAATTGTCTGCCGCCGTGAAAACCTACCCCTCGGAAAATATTCAAAGTTCTAAGTGTTCA
----------------------------------------------------TGACAATTTCCGAGTTAGGCC 	2
----------------------------------------------------TGACAATTTCCGAGTTAGGCCA 	5
----------------------------------------------------TGACAATTTCCGAGTTAGGCCAC 	1
------------------------------------------------------------------------CACTCTTATAATCAGTGGC 	2
-----------------------------------------------------------------------------------------GCCAAACTCGGAAATTGTCTGCC 	2
-----------------------------------------------------------------------------------------GCCAAACTCGGAAATTGTCTGC 	17

Overlaps with: MNEST038404
Overlaps with miRBase pre-miRNAs: cel-mir-800
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Caenorhabditis elegans GSM297752-9446 GCCAAACTCGGAAATTGTCTGC TGACAATTTCCGAGTTAGGCCA down 2 0


Secondary structure

GTGTGTAGGATTTTCGAAATTTTCCAAAGGGTAGGATACCGTGAACGGCGGCTGACAATTTCCGAGTTAGGCCACTCTTATAATCAGTGGCCAAACTCGGAAATTGTCTGCCGCCGTGAAAACCTACCCCTCGGAAAATATTCAAAGTTCTAAGTGTTCA
----------------------------------------------------TGACAATTTCCGAGTTAGGCCA 	7
----------------------------------------------------TGACAATTTCCGAGTTAGGC 	2
----------------------------------------------------TGACAATTTCCGAGTTAGGCCAC 	1
-----------------------------------------------------------------------------------------GCCAAACTCGGAAATTGTCTGC 	19
-------------------------------------------------------------------------------------------CAAACTCGGAAATTGTCTGCCG 	2
--------------------------------------------------------------------------------------------------GGAAATTGTCTGCCGCCGTG 	1

Overlaps with: MNEST038404
Overlaps with miRBase pre-miRNAs: cel-mir-800
HuntMi prediction: true miRNA