miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



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selected mature miRNA sequence: GCGTGCAAGGAGCCAAGCATG

selected species: Oryza sativa



6 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Oryza sativa GSM686040-31373 GCGTGCAAGGAGCCAAGCATG TGCCTGGCTCCCTGTATGCCA down 2 0


Secondary structure

GGCTTGAGAGCGTGCCTGGCTCCCTGTATGCCACTCATGTAGCCCAATCCATGGTGTGTTTGGATGCTGTGGGTGGCGTGCAAGGAGCCAAGCATGCGTGCCATG
----------CGTGCCTGGCTCCCTGTATGC 	1
------------TGCCTGGCTCCCTGTATGCCA 	29
------------TGCCTGGCTCCCTGTATGC 	1
--------------CCTGGCTCCCTGTATGCCACT 	1
------------------------------------------------------------TGGATGCTGTGGGTGGCGTGCAAG 	1
-------------------------------------------------------------GGATGCTGTGGGTGGCGTGCAAGG 	1
-------------------------------------------------------------------------TGGCGTGCAAGGAGCCAAGCA 	2
---------------------------------------------------------------------------GCGTGCAAGGAGCCAAGCATG 	44
---------------------------------------------------------------------------GCGTGCAAGGAGCCAAGCAT 	2

Overlaps with: MNEST041924 MNEST048827
Overlaps with miRBase pre-miRNAs: osa-MIR160b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Oryza sativa GSM686040-31373 GCGTGCAAGGAGCCAAGCATG TGCCTGGCTCCCTGTATGCCA down 2 0


Secondary structure

TGTTCAGAAGCTGTGTAGTGTGTGCCTGGCTCCCTGTATGCCACACATGTAGACCAACCCATGGTGTCTGGTTGCCTACTGGGTGGCGTGCAAGGAGCCAAGCATGCATGCCTGCCTGCATATGG
----------------------TGCCTGGCTCCCTGTATGCCA 	29
----------------------TGCCTGGCTCCCTGTATGC 	1
-----------------------------------------------------------------------------------TGGCGTGCAAGGAGCCAAGCA 	2
-------------------------------------------------------------------------------------GCGTGCAAGGAGCCAAGCATG 	44
-------------------------------------------------------------------------------------GCGTGCAAGGAGCCAAGCAT 	2

Overlaps with: MNEST041923 MNEST048826
Overlaps with miRBase pre-miRNAs: osa-MIR160a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Oryza sativa GSM686039-31370 GCGTGCAAGGAGCCAAGCATG TGCCTGGCTCCCTGTATGCCA down 2 0


Secondary structure

GGCTTGAGAGCGTGCCTGGCTCCCTGTATGCCACTCATGTAGCCCAATCCATGGTGTGTTTGGATGCTGTGGGTGGCGTGCAAGGAGCCAAGCATGCGTGCCATG
------------TGCCTGGCTCCCTGTATGCCA 	7
------------TGCCTGGCTCCCTGTATGC 	1
-------------------------------------------------------------GGATGCTGTGGGTGGCGTGCAAGG 	5
-------------------------------------------------------------------------TGGCGTGCAAGGAGCCAAGCA 	1
---------------------------------------------------------------------------GCGTGCAAGGAGCCAAGCATG 	212
---------------------------------------------------------------------------GCGTGCAAGGAGCCAAGCAT 	7
-----------------------------------------------------------------------------GTGCAAGGAGCCAAGCATG 	3

Overlaps with: MNEST041924 MNEST048827
Overlaps with miRBase pre-miRNAs: osa-MIR160b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Oryza sativa GSM686039-31370 GCGTGCAAGGAGCCAAGCATG TGCCTGGCTCCCTGTATGCCA down 2 0


Secondary structure

TGTTCAGAAGCTGTGTAGTGTGTGCCTGGCTCCCTGTATGCCACACATGTAGACCAACCCATGGTGTCTGGTTGCCTACTGGGTGGCGTGCAAGGAGCCAAGCATGCATGCCTGCCTGCATATGG
----------------------TGCCTGGCTCCCTGTATGCCA 	7
----------------------TGCCTGGCTCCCTGTATGC 	1
-----------------------------------------------------------------------------------TGGCGTGCAAGGAGCCAAGCA 	1
-------------------------------------------------------------------------------------GCGTGCAAGGAGCCAAGCATG 	212
-------------------------------------------------------------------------------------GCGTGCAAGGAGCCAAGCAT 	7
---------------------------------------------------------------------------------------GTGCAAGGAGCCAAGCATG 	3

Overlaps with: MNEST041923 MNEST048826
Overlaps with miRBase pre-miRNAs: osa-MIR160a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Oryza sativa GSM693279 GCGTGCAAGGAGCCAAGCATG TGCCTGGCTCCCTGTATGCCA down 2 0


Secondary structure

GGCTTGAGAGCGTGCCTGGCTCCCTGTATGCCACTCATGTAGCCCAATCCATGGTGTGTTTGGATGCTGTGGGTGGCGTGCAAGGAGCCAAGCATGCGTGCCATG
------------TGCCTGGCTCCCTGTATGCCA 	13
------------TGCCTGGCTCCCTGTATGC 	5
------------TGCCTGGCTCCCTGTATGCC 	2
-------------GCCTGGCTCCCTGTATGCCA 	1
-------------------------------------------------------------------------TGGCGTGCAAGGAGCCAAG 	1
---------------------------------------------------------------------------GCGTGCAAGGAGCCAAGCATG 	27

Overlaps with: MNEST041924 MNEST048827
Overlaps with miRBase pre-miRNAs: osa-MIR160b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Oryza sativa GSM693279 GCGTGCAAGGAGCCAAGCATG TGCCTGGCTCCCTGTATGCCA down 2 0


Secondary structure

TGTTCAGAAGCTGTGTAGTGTGTGCCTGGCTCCCTGTATGCCACACATGTAGACCAACCCATGGTGTCTGGTTGCCTACTGGGTGGCGTGCAAGGAGCCAAGCATGCATGCCTGCCTGCATATGG
----------------------TGCCTGGCTCCCTGTATGCCA 	13
----------------------TGCCTGGCTCCCTGTATGC 	5
----------------------TGCCTGGCTCCCTGTATGCC 	2
-----------------------GCCTGGCTCCCTGTATGCCA 	1
-----------------------------------------------------------------------------------TGGCGTGCAAGGAGCCAAG 	1
-------------------------------------------------------------------------------------GCGTGCAAGGAGCCAAGCATG 	27

Overlaps with: MNEST041923 MNEST048826
Overlaps with miRBase pre-miRNAs: osa-MIR160a
HuntMi prediction: true miRNA