miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: GCGTGCGAGGAGCCAAGCATG

selected species: Oryza sativa



1 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Oryza sativa GSM686039-31370 GCGTGCGAGGAGCCAAGCATG TGCCTGGCTCCCTGTATGCCA down 2 0


Secondary structure

GAGAGGTGAAAAAAAGGGGATATGCCTGGCTCCCTGTATGCCACTCGCGTAGCTGCCAAACTCAGTTGAAACAACTGCCTTCTCCCGGCGAGATTCAGGCATTGTGTTCGTACGTTTGGCTCTACTGCGGATGGCGTGCGAGGAGCCAAGCATGACCGTCTCTCTCTGTCTCT
----------------------TGCCTGGCTCCCTGTATGCCA 	7
----------------------TGCCTGGCTCCCTGTATGC 	1
-------------------------------------------------------------------------------------------------------------------------------------GCGTGCGAGGAGCCAAGCATGA 	7
-------------------------------------------------------------------------------------------------------------------------------------GCGTGCGAGGAGCCAAGCATG 	42

Overlaps with: MNEST045236 MNEST045418 MNEST045467 MNEST046489
Overlaps with miRBase pre-miRNAs: osa-MIR160d
HuntMi prediction: true miRNA