miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: GGAATCTTGATGATGCTGCAT

selected species: Brachypodium distachyon



2 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Brachypodium distachyon GSM506620-12051 GGAATCTTGATGATGCTGCAT GTGGCATCATCAAGATTCACA down 2 0


Secondary structure

CGACCAGTCGGTGATTTCTGCTGTGGCATCATCAAGATTCACACAAATGCATGCTAGCTTCGTCTATGCCATCCTTTCTCATCTTTCGATCTCGATCTCGGCCCTAATTAAGTAATTATACCCAATTGTGGATCGGCCGGATTGGAGATCGATGGATGCGTGGAGAGGAGCTAGATTAGCTATAGCTTATGTGTGGGAATCTTGATGATGCTGCATCGGACATCAGTGACTAAAA
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGAATCTTGATGATGCTGCAT 	68
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGAATCTTGATGATGCTGCA 	2
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATCTTGATGATGCTGCAT 	3
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCTTGATGATGCTGCATCGG 	1

Overlaps with: MNEST041768
Overlaps with miRBase pre-miRNAs: bdi-MIR172b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Brachypodium distachyon GSM506621-23192 GGAATCTTGATGATGCTGCAT GTGGCATCATCAAGATTCACA down 2 0


Secondary structure

CGACCAGTCGGTGATTTCTGCTGTGGCATCATCAAGATTCACACAAATGCATGCTAGCTTCGTCTATGCCATCCTTTCTCATCTTTCGATCTCGATCTCGGCCCTAATTAAGTAATTATACCCAATTGTGGATCGGCCGGATTGGAGATCGATGGATGCGTGGAGAGGAGCTAGATTAGCTATAGCTTATGTGTGGGAATCTTGATGATGCTGCATCGGACATCAGTGACTAAAA
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGGGAATCTTGATGATGCTGCAT 	2
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGGAATCTTGATGATGCTGCATC 	1
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGGAATCTTGATGATGCTGCAT 	4
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGAATCTTGATGATGCTGCA 	6
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGAATCTTGATGATGCTGCAT 	322
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGAATCTTGATGATGCTGC 	1
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAATCTTGATGATGCTGCA 	2
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAATCTTGATGATGCTGCAT 	170
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATCTTGATGATGCTGCAT 	1
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGATGATGCTGCATCGGACA 	2
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATGATGCTGCATCGGACA 	1

Overlaps with: MNEST041768
Overlaps with miRBase pre-miRNAs: bdi-MIR172b
HuntMi prediction: true miRNA