miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

Please select library, species and/or miRNA sequence.

selected mature miRNA sequence: GGAATGGATGGTTAGGAGAG

selected species: Vitis vinifera

4 records found

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
1	Vitis vinifera	GSM458927	GGAATGGATGGTTAGGAGAG	TTCCTATACCACCCATTCCCT	up	3	1

Secondary structure

CTGCAGGTTTGAAATGGGAGATGAATATTTCGAAAGCAATAGGAATGGATGGTTAGGAGAGAACTCCTCTTATATATTTCTTCATCTTCTCCGCCGGAGATGTGGAAGTGCAGTTGGTTCCTATACCACCCATTCCCTACGGTTTTCGAAATTTTCTCCCTTTTCTCTTGGTGCTC
-----------------GAGATGAATATTTCGAAAGCAATA 	1
----------------------------TTCGAAAGCAATAGGAATGGATG 	1
----------------------------TTCGAAAGCAATAGGAATGGAT 	2
----------------------------TTCGAAAGCAATAGGAATGGA 	1
-----------------------------TCGAAAGCAATAGGAATGGAT 	3
------------------------------CGAAAGCAATAGGAATGGATG 	6
-----------------------------------------GGAATGGATGGTTAGGAGAGA 	21
-----------------------------------------GGAATGGATGGTTAGGAGAG 	79
-----------------------------------------GGAATGGATGGTTAGGAGA 	20
------------------------------------------GAATGGATGGTTAGGAGAGA 	1
------------------------------------------GAATGGATGGTTAGGAGAG 	1
-------------------------------------------AATGGATGGTTAGGAGAGAA 	2
-------------------------------------------AATGGATGGTTAGGAGAGA 	4
--------------------------------------------------------------------------------------------------------------------GTTCCTATACCACCCATTCCCTA 	1
---------------------------------------------------------------------------------------------------------------------TTCCTATACCACCCATTCCCTA 	3
---------------------------------------------------------------------------------------------------------------------TTCCTATACCACCCATTCCC 	1

Overlaps with: MNEST008300
Overlaps with miRBase pre-miRNAs: vvi-MIR3633a
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
2	Vitis vinifera	GSM458930-2718	GGAATGGATGGTTAGGAGAG	TTCCTATACCACCCATTCCCT	up	3	1

Secondary structure

CTGCAGGTTTGAAATGGGAGATGAATATTTCGAAAGCAATAGGAATGGATGGTTAGGAGAGAACTCCTCTTATATATTTCTTCATCTTCTCCGCCGGAGATGTGGAAGTGCAGTTGGTTCCTATACCACCCATTCCCTACGGTTTTCGAAATTTTCTCCCTTTTCTCTTGGTGCTC
-----------------GAGATGAATATTTCGAAAGCAATA 	1
----------------------------TTCGAAAGCAATAGGAATGGATG 	1
-----------------------------TCGAAAGCAATAGGAATGGAT 	1
------------------------------CGAAAGCAATAGGAATGGATG 	2
---------------------------------------TAGGAATGGATGGTTAGGAGAG 	1
-----------------------------------------GGAATGGATGGTTAGGAGAGA 	28
-----------------------------------------GGAATGGATGGTTAGGAGAG 	137
-----------------------------------------GGAATGGATGGTTAGGAGA 	73
-------------------------------------------AATGGATGGTTAGGAGAGAA 	1
-------------------------------------------AATGGATGGTTAGGAGAGA 	1
-----------------------------------------------------------------------------------------------GGAGATGTGGAAGTGCAGTT 	1
--------------------------------------------------------------------------------------------------------------------GTTCCTATACCACCCATTCCCTA 	2
--------------------------------------------------------------------------------------------------------------------GTTCCTATACCACCCATTCC 	1
---------------------------------------------------------------------------------------------------------------------TTCCTATACCACCCATTCCCTA 	31
---------------------------------------------------------------------------------------------------------------------TTCCTATACCACCCATTCCCT 	2
---------------------------------------------------------------------------------------------------------------------TTCCTATACCACCCATTCC 	1
------------------------------------------------------------------------------------------------------------------------CTATACCACCCATTCCCTA 	1
--------------------------------------------------------------------------------------------------------------------------------CCCATTCCCTACGGTTTTCGAA 	1

Overlaps with: MNEST008300
Overlaps with miRBase pre-miRNAs: vvi-MIR3633a
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
3	Vitis vinifera	GSM458929-2717	GGAATGGATGGTTAGGAGAG	TTCCTATACCACCCATTCCCT	up	3	1

Secondary structure

CTGCAGGTTTGAAATGGGAGATGAATATTTCGAAAGCAATAGGAATGGATGGTTAGGAGAGAACTCCTCTTATATATTTCTTCATCTTCTCCGCCGGAGATGTGGAAGTGCAGTTGGTTCCTATACCACCCATTCCCTACGGTTTTCGAAATTTTCTCCCTTTTCTCTTGGTGCTC
----------------------------TTCGAAAGCAATAGGAATGGA 	1
------------------------------CGAAAGCAATAGGAATGGATG 	2
-------------------------------GAAAGCAATAGGAATGGAT 	1
---------------------------------------TAGGAATGGATGGTTAGGAGAG 	1
---------------------------------------TAGGAATGGATGGTTAGGAGA 	1
-----------------------------------------GGAATGGATGGTTAGGAGAGA 	18
-----------------------------------------GGAATGGATGGTTAGGAGAG 	139
-----------------------------------------GGAATGGATGGTTAGGAGA 	27
------------------------------------------GAATGGATGGTTAGGAGAG 	1
--------------------------------------------------------------------------------------------------------------------GTTCCTATACCACCCATTCCCTA 	10
--------------------------------------------------------------------------------------------------------------------GTTCCTATACCACCCATTCCCT 	1
--------------------------------------------------------------------------------------------------------------------GTTCCTATACCACCCATTCCC 	1
---------------------------------------------------------------------------------------------------------------------TTCCTATACCACCCATTCCCTA 	45
---------------------------------------------------------------------------------------------------------------------TTCCTATACCACCCATTCCCT 	3
---------------------------------------------------------------------------------------------------------------------TTCCTATACCACCCATTCCC 	1
---------------------------------------------------------------------------------------------------------------------TTCCTATACCACCCATTCC 	2
------------------------------------------------------------------------------------------------------------------------CTATACCACCCATTCCCTA 	1
--------------------------------------------------------------------------------------------------------------------------------CCCATTCCCTACGGTTTTCGAA 	1

Overlaps with: MNEST008300
Overlaps with miRBase pre-miRNAs: vvi-MIR3633a
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
4	Vitis vinifera	GSM458928-2716	GGAATGGATGGTTAGGAGAG	TTCCTATACCACCCATTCCCT	up	3	1

Secondary structure

CTGCAGGTTTGAAATGGGAGATGAATATTTCGAAAGCAATAGGAATGGATGGTTAGGAGAGAACTCCTCTTATATATTTCTTCATCTTCTCCGCCGGAGATGTGGAAGTGCAGTTGGTTCCTATACCACCCATTCCCTACGGTTTTCGAAATTTTCTCCCTTTTCTCTTGGTGCTC
-----------------GAGATGAATATTTCGAAAGCAATA 	1
--------------------ATGAATATTTCGAAAGCAAT 	1
----------------------------TTCGAAAGCAATAGGAATGGATG 	3
----------------------------TTCGAAAGCAATAGGAATGGAT 	2
-----------------------------TCGAAAGCAATAGGAATGGAT 	8
-----------------------------TCGAAAGCAATAGGAATGGA 	2
------------------------------CGAAAGCAATAGGAATGGATG 	32
------------------------------CGAAAGCAATAGGAATGGAT 	1
------------------------------CGAAAGCAATAGGAATGGA 	1
---------------------------------------TAGGAATGGATGGTTAGGAGAG 	1
---------------------------------------TAGGAATGGATGGTTAGGAGA 	5
---------------------------------------TAGGAATGGATGGTTAGGA 	1
----------------------------------------AGGAATGGATGGTTAGGAGAG 	1
----------------------------------------AGGAATGGATGGTTAGGAGA 	2
-----------------------------------------GGAATGGATGGTTAGGAGAGAA 	3
-----------------------------------------GGAATGGATGGTTAGGAGAGA 	252
-----------------------------------------GGAATGGATGGTTAGGAGAG 	2537
-----------------------------------------GGAATGGATGGTTAGGAGA 	521
------------------------------------------GAATGGATGGTTAGGAGAGA 	2
------------------------------------------GAATGGATGGTTAGGAGAG 	9
-------------------------------------------AATGGATGGTTAGGAGAGAAC 	2
-------------------------------------------AATGGATGGTTAGGAGAGAA 	3
-------------------------------------------AATGGATGGTTAGGAGAGA 	18
--------------------------------------------------------------------------------------------------------------------GTTCCTATACCACCCATTCCCTA 	3
---------------------------------------------------------------------------------------------------------------------TTCCTATACCACCCATTCCCTA 	18
---------------------------------------------------------------------------------------------------------------------TTCCTATACCACCCATTCCC 	1
---------------------------------------------------------------------------------------------------------------------TTCCTATACCACCCATTCC 	1
--------------------------------------------------------------------------------------------------------------------------------CCCATTCCCTACGGTTTTCGAA 	1

Overlaps with: MNEST008300
Overlaps with miRBase pre-miRNAs: vvi-MIR3633a
HuntMi prediction: true miRNA