miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: GGAATGGGCTGATTGGGAAGC

selected species: Glycine max



5 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Glycine max GSM543396 GGAATGGGCTGATTGGGAAGC TTCCCAATTCCGCCCATTCCTA up 2 1


Secondary structure

GAGTGAATACGAAGAGCTGGGAACGGGAGATTGGAGCAATCAGAATTTGTGGGAATGGGCTGATTGGGAAGCAATGTGTGCTGGTGCAATGCATTTAATTTCTTCCCAATTCCGCCCATTCCTATGATTTCTGATGATTCTTTCCTTTCCTTTTGCTTTTTGCAATACGCAA
---------------------------------------TCAGAATTTGTGGGAATGGGC 	55
-----------------------------------------AGAATTTGTGGGAATGGGCTGA 	10
-----------------------------------------AGAATTTGTGGGAATGGGCTG 	16
------------------------------------------------GTGGGAATGGGCTGATTGGGA 	13
-------------------------------------------------TGGGAATGGGCTGATTGGGAA 	107
-------------------------------------------------TGGGAATGGGCTGATTGGGA 	309
--------------------------------------------------GGGAATGGGCTGATTGGGAAG 	46
--------------------------------------------------GGGAATGGGCTGATTGGGAA 	24
---------------------------------------------------GGAATGGGCTGATTGGGAAGCAA 	21
---------------------------------------------------GGAATGGGCTGATTGGGAAGCA 	87
---------------------------------------------------GGAATGGGCTGATTGGGAAGC 	12725
---------------------------------------------------GGAATGGGCTGATTGGGAAG 	1325
---------------------------------------------------GGAATGGGCTGATTGGGAA 	84
----------------------------------------------------GAATGGGCTGATTGGGAAGC 	11
-----------------------------------------------------AATGGGCTGATTGGGAAGCAA 	33
-----------------------------------------------------AATGGGCTGATTGGGAAGCA 	12
------------------------------------------------------------------------------------------------------TTCCCAATTCCGCCCATTCCTA 	545
------------------------------------------------------------------------------------------------------TTCCCAATTCCGCCCATTCCT 	16
------------------------------------------------------------------------------------------------------TTCCCAATTCCGCCCATTCC 	11


Overlaps with: MNEST040480 MNEST040481 MNEST048585
Overlaps with miRBase pre-miRNAs: gma-MIR482a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Glycine max GSM852280 GGAATGGGCTGATTGGGAAGC TTCCCAATTCCGCCCATTCCTA up 2 1


Secondary structure

GAGTGAATACGAAGAGCTGGGAACGGGAGATTGGAGCAATCAGAATTTGTGGGAATGGGCTGATTGGGAAGCAATGTGTGCTGGTGCAATGCATTTAATTTCTTCCCAATTCCGCCCATTCCTATGATTTCTGATGATTCTTTCCTTTCCTTTTGCTTTTTGCAATACGCAA
------------------------------------CAATCAGAATTTGTGGGAATGGGC 	2
--------------------------------------ATCAGAATTTGTGGGAATGGG 	2
----------------------------------------CAGAATTTGTGGGAATGGGC 	2
-----------------------------------------AGAATTTGTGGGAATGGGCTGA 	80
-----------------------------------------AGAATTTGTGGGAATGGGCTG 	7
-----------------------------------------AGAATTTGTGGGAATGGGC 	7
--------------------------------------------ATTTGTGGGAATGGGCTGATTGG 	2
-----------------------------------------------TGTGGGAATGGGCTGATTGGGAAG 	29
------------------------------------------------GTGGGAATGGGCTGATTGGGAAG 	95
-------------------------------------------------TGGGAATGGGCTGATTGGGAAGCA 	52
-------------------------------------------------TGGGAATGGGCTGATTGGGAAGC 	238
-------------------------------------------------TGGGAATGGGCTGATTGGGAA 	166
--------------------------------------------------GGGAATGGGCTGATTGGGAAGC 	102
--------------------------------------------------GGGAATGGGCTGATTGGGAAG 	505
--------------------------------------------------GGGAATGGGCTGATTGGGAA 	27
--------------------------------------------------GGGAATGGGCTGATTGGGA 	22
--------------------------------------------------GGGAATGGGCTGATTGGGAAGCA 	13
---------------------------------------------------GGAATGGGCTGATTGGGAAGCAA 	23
---------------------------------------------------GGAATGGGCTGATTGGGAAGCA 	193
---------------------------------------------------GGAATGGGCTGATTGGGAAGC 	697418
---------------------------------------------------GGAATGGGCTGATTGGGAAG 	3
---------------------------------------------------GGAATGGGCTGATTGGGAA 	406
---------------------------------------------------GGAATGGGCTGATTGGGAAG 	3
----------------------------------------------------GAATGGGCTGATTGGGAAGC 	621
----------------------------------------------------GAATGGGCTGATTGGGAAGC 	621
----------------------------------------------------GAATGGGCTGATTGGGAAGCA 	6
----------------------------------------------------GAATGGGCTGATTGGGAAG 	5
-----------------------------------------------------AATGGGCTGATTGGGAAGC 	99
-----------------------------------------------------AATGGGCTGATTGGGAAGC 	99
-----------------------------------------------------AATGGGCTGATTGGGAAGCA 	10
-----------------------------------------------------AATGGGCTGATTGGGAAGCAA 	6
----------------------------------------------------------------------------------------------------TCTTCCCAATTCCGCCCATTCC 	7
------------------------------------------------------------------------------------------------------TTCCCAATTCCGCCCATTCCTA 	1122
------------------------------------------------------------------------------------------------------TTCCCAATTCCGCCCATTCCTAT 	1
-------------------------------------------------------------------------------------------------------TCCCAATTCCGCCCATTCCTA 	1
-------------------------------------------------------------------------------------------------------TCCCAATTCCGCCCATTCCTATG 	3
-------------------------------------------------------------------------------------------------------TCCCAATTCCGCCCATTCCTAT 	2
-------------------------------------------------------------------------------------------------------TCCCAATTCCGCCCATTCCTA 	1
--------------------------------------------------------------------------------------------------------CCCAATTCCGCCCATTCCTA 	2
---------------------------------------------------------------------------------------------------------CCAATTCCGCCCATTCCTA 	1
-----------------------------------------------------------------------------------------------------------AATTCCGCCCATTCCTATG 	2
----------------------------------------------------------------------------------------------------------------CGCCCATTCCTATGATTTCTGA 	1
-----------------------------------------------------------------------------------------------------------------GCCCATTCCTATGATTTCTGA 	1


Overlaps with: MNEST040480 MNEST040481 MNEST048585
Overlaps with miRBase pre-miRNAs: gma-MIR482a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Glycine max GSM543394 GGAATGGGCTGATTGGGAAGC TTCCCAATTCCGCCCATTCCTA up 2 1


Secondary structure

GAGTGAATACGAAGAGCTGGGAACGGGAGATTGGAGCAATCAGAATTTGTGGGAATGGGCTGATTGGGAAGCAATGTGTGCTGGTGCAATGCATTTAATTTCTTCCCAATTCCGCCCATTCCTATGATTTCTGATGATTCTTTCCTTTCCTTTTGCTTTTTGCAATACGCAA
--------------------------GAGATTGGAGCAATCAGAATTTGTG 	5
---------------------------------------TCAGAATTTGTGGGAATGGGC 	17
-------------------------------------------------TGGGAATGGGCTGATTGGGAA 	80
-------------------------------------------------TGGGAATGGGCTGATTGGGA 	115
--------------------------------------------------GGGAATGGGCTGATTGGGAAG 	36
--------------------------------------------------GGGAATGGGCTGATTGGGAA 	9
--------------------------------------------------GGGAATGGGCTGATTGGGA 	5
---------------------------------------------------GGAATGGGCTGATTGGGAAGCAA 	8
---------------------------------------------------GGAATGGGCTGATTGGGAAGCA 	77
---------------------------------------------------GGAATGGGCTGATTGGGAAGC 	5911
---------------------------------------------------GGAATGGGCTGATTGGGAAG 	676
---------------------------------------------------GGAATGGGCTGATTGGGAA 	39
----------------------------------------------------GAATGGGCTGATTGGGAAGC 	25
-----------------------------------------------------AATGGGCTGATTGGGAAGCAA 	23
------------------------------------------------------------------------------------------------------TTCCCAATTCCGCCCATTCCTA 	119


Overlaps with: MNEST040480 MNEST040481 MNEST048585
Overlaps with miRBase pre-miRNAs: gma-MIR482a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Glycine max GSM543393 GGAATGGGCTGATTGGGAAGC TTCCCAATTCCGCCCATTCCTA up 2 1


Secondary structure

GAGTGAATACGAAGAGCTGGGAACGGGAGATTGGAGCAATCAGAATTTGTGGGAATGGGCTGATTGGGAAGCAATGTGTGCTGGTGCAATGCATTTAATTTCTTCCCAATTCCGCCCATTCCTATGATTTCTGATGATTCTTTCCTTTCCTTTTGCTTTTTGCAATACGCAA
---------------------------------------TCAGAATTTGTGGGAATGGGC 	28
-----------------------------------------AGAATTTGTGGGAATGGGCTGA 	5
------------------------------------------------GTGGGAATGGGCTGATTGGGAAG 	21
-------------------------------------------------TGGGAATGGGCTGATTGGGAAG 	15
-------------------------------------------------TGGGAATGGGCTGATTGGGAA 	98
-------------------------------------------------TGGGAATGGGCTGATTGGGA 	135
--------------------------------------------------GGGAATGGGCTGATTGGGAAG 	68
--------------------------------------------------GGGAATGGGCTGATTGGGAA 	11
---------------------------------------------------GGAATGGGCTGATTGGGAAGCAA 	24
---------------------------------------------------GGAATGGGCTGATTGGGAAGCA 	77
---------------------------------------------------GGAATGGGCTGATTGGGAAGC 	6159
---------------------------------------------------GGAATGGGCTGATTGGGAAG 	855
---------------------------------------------------GGAATGGGCTGATTGGGAA 	69
----------------------------------------------------GAATGGGCTGATTGGGAAGC 	29
----------------------------------------------------GAATGGGCTGATTGGGAAG 	5
-----------------------------------------------------AATGGGCTGATTGGGAAGCAA 	25
-----------------------------------------------------AATGGGCTGATTGGGAAGCA 	6
------------------------------------------------------------------------------------------------------TTCCCAATTCCGCCCATTCCTA 	100


Overlaps with: MNEST040480 MNEST040481 MNEST048585
Overlaps with miRBase pre-miRNAs: gma-MIR482a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Glycine max GSM543395 GGAATGGGCTGATTGGGAAGC TTCCCAATTCCGCCCATTCCTA up 2 1


Secondary structure

GAGTGAATACGAAGAGCTGGGAACGGGAGATTGGAGCAATCAGAATTTGTGGGAATGGGCTGATTGGGAAGCAATGTGTGCTGGTGCAATGCATTTAATTTCTTCCCAATTCCGCCCATTCCTATGATTTCTGATGATTCTTTCCTTTCCTTTTGCTTTTTGCAATACGCAA
---------------------------------------------------GGAATGGGCTGATTGGGAAGC 	55
------------------------------------------------------------------------------------------------------TTCCCAATTCCGCCCATTCCTA 	6


Overlaps with: MNEST040480 MNEST040481 MNEST048585
Overlaps with miRBase pre-miRNAs: gma-MIR482a
HuntMi prediction: true miRNA