miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: GGAATGTTGTCTGGTTCAAGG

selected species: Oryza sativa



5 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Oryza sativa GSM571078-22531 GGAATGTTGTCTGGTTCAAGG TCGAACCAGGCTTCATTCCCC up 3 0


Secondary structure

ACGCAGCCTTAATCTATACATAGCTCCATTGCCTCTCTGCTTCTTTGGCATAGACGGGAAGGGAAACAAATGACACAATGCTAGTGATAGAGGGGATTGAAGGAAGCTATTGTTTCTGGGTGGAATGTTGTCTGGTTCAAGGCCCCTTAGGATGTGTGATTTTTGATGGTTTATGCATTCATCTTGATGCGAACATCTATCTCGGATCTTTGGGTTCTCGAACCAGGCTTCATTCCCCTCAGAGATAGCTTTTCCATGAGTCTTTCGTTTTATCAGCATTTTTTTAGTTTTATTTTTGTAGTGGTCTCGTCTATTGGAAGAAGGGGAGATTCAATGCAGGGGTATATAAATCAAGG
------------------------------------------------------------------------------------------------------------------------TGGAATGTTGTCTGGTTCAA 	1
-------------------------------------------------------------------------------------------------------------------------GGAATGTTGTCTGGTTCAAGG 	9
-------------------------------------------------------------------------------------------------------------------------GGAATGTTGTCTGGTTCAAG 	1
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCGAACCAGGCTTCATTC 	1
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGAACCAGGCTTCATTCCCC 	2

Overlaps with: MNEST041941 MNEST048848
Overlaps with miRBase pre-miRNAs: osa-MIR166e
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Oryza sativa GSM520638-18676 GGAATGTTGTCTGGTTCAAGG TCGAACCAGGCTTCATTCCCC up 3 0


Secondary structure

ACGCAGCCTTAATCTATACATAGCTCCATTGCCTCTCTGCTTCTTTGGCATAGACGGGAAGGGAAACAAATGACACAATGCTAGTGATAGAGGGGATTGAAGGAAGCTATTGTTTCTGGGTGGAATGTTGTCTGGTTCAAGGCCCCTTAGGATGTGTGATTTTTGATGGTTTATGCATTCATCTTGATGCGAACATCTATCTCGGATCTTTGGGTTCTCGAACCAGGCTTCATTCCCCTCAGAGATAGCTTTTCCATGAGTCTTTCGTTTTATCAGCATTTTTTTAGTTTTATTTTTGTAGTGGTCTCGTCTATTGGAAGAAGGGGAGATTCAATGCAGGGGTATATAAATCAAGG
-------------------------------------------------------------------------------------------------------------------------GGAATGTTGTCTGGTTCAAGG 	39
-------------------------------------------------------------------------------------------------------------------------GGAATGTTGTCTGGTTCAA 	3
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGAACCAGGCTTCATTCCCC 	8

Overlaps with: MNEST041941 MNEST048848
Overlaps with miRBase pre-miRNAs: osa-MIR166e
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Oryza sativa GSM520640-18679 GGAATGTTGTCTGGTTCAAGG TCGAACCAGGCTTCATTCCCC up 3 0


Secondary structure

ACGCAGCCTTAATCTATACATAGCTCCATTGCCTCTCTGCTTCTTTGGCATAGACGGGAAGGGAAACAAATGACACAATGCTAGTGATAGAGGGGATTGAAGGAAGCTATTGTTTCTGGGTGGAATGTTGTCTGGTTCAAGGCCCCTTAGGATGTGTGATTTTTGATGGTTTATGCATTCATCTTGATGCGAACATCTATCTCGGATCTTTGGGTTCTCGAACCAGGCTTCATTCCCCTCAGAGATAGCTTTTCCATGAGTCTTTCGTTTTATCAGCATTTTTTTAGTTTTATTTTTGTAGTGGTCTCGTCTATTGGAAGAAGGGGAGATTCAATGCAGGGGTATATAAATCAAGG
------------------------------------------------------------------------------------------------------------------TCTGGGTGGAATGTTGTCTGG 	1
------------------------------------------------------------------------------------------------------------------------TGGAATGTTGTCTGGTTCAAG 	1
------------------------------------------------------------------------------------------------------------------------TGGAATGTTGTCTGGTTCAA 	1
-------------------------------------------------------------------------------------------------------------------------GGAATGTTGTCTGGTTCAAGG 	71
-------------------------------------------------------------------------------------------------------------------------GGAATGTTGTCTGGTTCAAG 	2
-------------------------------------------------------------------------------------------------------------------------GGAATGTTGTCTGGTTCAA 	2
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGAACCAGGCTTCATTCCCC 	6
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGAACCAGGCTTCATTCCC 	1
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAACCAGGCTTCATTCCCC 	1

Overlaps with: MNEST041941 MNEST048848
Overlaps with miRBase pre-miRNAs: osa-MIR166e
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Oryza sativa GSM571077-22529 GGAATGTTGTCTGGTTCAAGG TCGAACCAGGCTTCATTCCCC up 3 0


Secondary structure

ACGCAGCCTTAATCTATACATAGCTCCATTGCCTCTCTGCTTCTTTGGCATAGACGGGAAGGGAAACAAATGACACAATGCTAGTGATAGAGGGGATTGAAGGAAGCTATTGTTTCTGGGTGGAATGTTGTCTGGTTCAAGGCCCCTTAGGATGTGTGATTTTTGATGGTTTATGCATTCATCTTGATGCGAACATCTATCTCGGATCTTTGGGTTCTCGAACCAGGCTTCATTCCCCTCAGAGATAGCTTTTCCATGAGTCTTTCGTTTTATCAGCATTTTTTTAGTTTTATTTTTGTAGTGGTCTCGTCTATTGGAAGAAGGGGAGATTCAATGCAGGGGTATATAAATCAAGG
------------------------------------------------------------------------------------------------------------------------TGGAATGTTGTCTGGTTCAA 	1
-------------------------------------------------------------------------------------------------------------------------GGAATGTTGTCTGGTTCAAGG 	10
-------------------------------------------------------------------------------------------------------------------------GGAATGTTGTCTGGTTCAAG 	1
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCGAACCAGGCTTCATTCC 	2
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGAACCAGGCTTCATTCCCC 	2
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTCCCCTCAGAGATAGCTTTTCC 	1

Overlaps with: MNEST041941 MNEST048848
Overlaps with miRBase pre-miRNAs: osa-MIR166e
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Oryza sativa GSM520635-18669 GGAATGTTGTCTGGTTCAAGG TCGAACCAGGCTTCATTCCCC up 3 0


Secondary structure

ACGCAGCCTTAATCTATACATAGCTCCATTGCCTCTCTGCTTCTTTGGCATAGACGGGAAGGGAAACAAATGACACAATGCTAGTGATAGAGGGGATTGAAGGAAGCTATTGTTTCTGGGTGGAATGTTGTCTGGTTCAAGGCCCCTTAGGATGTGTGATTTTTGATGGTTTATGCATTCATCTTGATGCGAACATCTATCTCGGATCTTTGGGTTCTCGAACCAGGCTTCATTCCCCTCAGAGATAGCTTTTCCATGAGTCTTTCGTTTTATCAGCATTTTTTTAGTTTTATTTTTGTAGTGGTCTCGTCTATTGGAAGAAGGGGAGATTCAATGCAGGGGTATATAAATCAAGG
----------------------------------------------------------------------------------------------------------------------GGTGGAATGTTGTCTGGTTCAAGG 	1
-------------------------------------------------------------------------------------------------------------------------GGAATGTTGTCTGGTTCAAGGC 	1
-------------------------------------------------------------------------------------------------------------------------GGAATGTTGTCTGGTTCAAGG 	47

Overlaps with: MNEST041941 MNEST048848
Overlaps with miRBase pre-miRNAs: osa-MIR166e
HuntMi prediction: true miRNA