miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



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selected mature miRNA sequence: GGAGAAATTATCCTTGGTGTGT

selected species: Mus musculus



7 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Mus musculus GSM527274-2107 GGAGAAATTATCCTTGGTGTGT ATACAAGGATAATTTCTTTTT up 1 1


Secondary structure

GTGCTACTGTTTCATACTTGAGGAGAAATTATCCTTGGTGTGTTGGCTCTTTTGGATGAATCATACAAGGATAATTTCTTTTTGAGTATCAAATACTGCCC
---------------------GGAGAAATTATCCTTGGTGTGTT 	83
---------------------GGAGAAATTATCCTTGGTGTG 	3
---------------------GGAGAAATTATCCTTGGTGT 	5
---------------------GGAGAAATTATCCTTGGTGTGT 	89
------------------------GAAATTATCCTTGGTGTGTT 	3
------------------------GAAATTATCCTTGGTGTGT 	3
-------------------------------------------------------------CATACAAGGATAATTTCTTTTT 	10
--------------------------------------------------------------ATACAAGGATAATTTCTTTTT 	2
--------------------------------------------------------------ATACAAGGATAATTTCTTTTTG 	1
---------------------------------------------------------------TACAAGGATAATTTCTTTTTGA 	1
----------------------------------------------------------------ACAAGGATAATTTCTTTTT 	1


Overlaps with: MNEST032201 MNEST032202
Overlaps with miRBase pre-miRNAs: mmu-mir-539
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Mus musculus GSM527280 GGAGAAATTATCCTTGGTGTGT ATACAAGGATAATTTCTTTTT up 1 1


Secondary structure

GTGCTACTGTTTCATACTTGAGGAGAAATTATCCTTGGTGTGTTGGCTCTTTTGGATGAATCATACAAGGATAATTTCTTTTTGAGTATCAAATACTGCCC
---------------------GGAGAAATTATCCTTGGTGTGTT 	21
---------------------GGAGAAATTATCCTTGGTGTGT 	35
---------------------GGAGAAATTATCCTTGGTGT 	3
---------------------GGAGAAATTATCCTTGGTGTG 	2
-------------------------------------------------------------CATACAAGGATAATTTCTTTTT 	5
--------------------------------------------------------------ATACAAGGATAATTTCTTTTT 	1
---------------------------------------------------------------TACAAGGATAATTTCTTTTT 	1
----------------------------------------------------------------ACAAGGATAATTTCTTTTT 	1


Overlaps with: MNEST032201 MNEST032202
Overlaps with miRBase pre-miRNAs: mmu-mir-539
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Mus musculus GSM527276 GGAGAAATTATCCTTGGTGTGT ATACAAGGATAATTTCTTTTT up 1 1


Secondary structure

GTGCTACTGTTTCATACTTGAGGAGAAATTATCCTTGGTGTGTTGGCTCTTTTGGATGAATCATACAAGGATAATTTCTTTTTGAGTATCAAATACTGCCC
---------------------GGAGAAATTATCCTTGGTGTGTT 	99
---------------------GGAGAAATTATCCTTGGTGTGT 	115
---------------------GGAGAAATTATCCTTGGTGTGTTGGC 	1
---------------------GGAGAAATTATCCTTGGTGT 	1
---------------------GGAGAAATTATCCTTGGTGTGTTG 	1
---------------------GGAGAAATTATCCTTGGTGTG 	5
------------------------GAAATTATCCTTGGTGTGTT 	4
------------------------GAAATTATCCTTGGTGTGT 	1
-------------------------AAATTATCCTTGGTGTGTT 	6
-------------------------------------------------------------CATACAAGGATAATTTCTTTTT 	4
--------------------------------------------------------------ATACAAGGATAATTTCTTTTTG 	1
---------------------------------------------------------------TACAAGGATAATTTCTTTTT 	2


Overlaps with: MNEST032201 MNEST032202
Overlaps with miRBase pre-miRNAs: mmu-mir-539
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Mus musculus GSM527277-2110 GGAGAAATTATCCTTGGTGTGT ATACAAGGATAATTTCTTTTT up 1 1


Secondary structure

GTGCTACTGTTTCATACTTGAGGAGAAATTATCCTTGGTGTGTTGGCTCTTTTGGATGAATCATACAAGGATAATTTCTTTTTGAGTATCAAATACTGCCC
-------------------GAGGAGAAATTATCCTTGGTGTGT 	1
---------------------GGAGAAATTATCCTTGGTGTG 	10
---------------------GGAGAAATTATCCTTGGTGTGTT 	144
---------------------GGAGAAATTATCCTTGGTGT 	12
---------------------GGAGAAATTATCCTTGGTGTGT 	209
------------------------GAAATTATCCTTGGTGTGTT 	10
------------------------GAAATTATCCTTGGTGTGT 	6
-------------------------AAATTATCCTTGGTGTGTT 	5
-------------------------------------------------------------CATACAAGGATAATTTCTTTTT 	22
-------------------------------------------------------------CATACAAGGATAATTTCTTTT 	1
---------------------------------------------------------------TACAAGGATAATTTCTTTTT 	3
----------------------------------------------------------------ACAAGGATAATTTCTTTTT 	4


Overlaps with: MNEST032201 MNEST032202
Overlaps with miRBase pre-miRNAs: mmu-mir-539
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Mus musculus GSM539875 GGAGAAATTATCCTTGGTGTGT ATACAAGGATAATTTCTTTTT up 1 1


Secondary structure

GTGCTACTGTTTCATACTTGAGGAGAAATTATCCTTGGTGTGTTGGCTCTTTTGGATGAATCATACAAGGATAATTTCTTTTTGAGTATCAAATACTGCCC
---------------------GGAGAAATTATCCTTGGTGTGTT 	2
---------------------GGAGAAATTATCCTTGGTGTG 	1
---------------------GGAGAAATTATCCTTGGTGTGT 	15
---------------------GGAGAAATTATCCTTGGTGT 	3
---------------------GGAGAAATTATCCTTGGTG 	2
-------------------------------------------------------------CATACAAGGATAATTTCTTTTT 	3


Overlaps with: MNEST032201 MNEST032202
Overlaps with miRBase pre-miRNAs: mmu-mir-539
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Mus musculus GSM527279-2112 GGAGAAATTATCCTTGGTGTGT ATACAAGGATAATTTCTTTTT up 1 1


Secondary structure

GTGCTACTGTTTCATACTTGAGGAGAAATTATCCTTGGTGTGTTGGCTCTTTTGGATGAATCATACAAGGATAATTTCTTTTTGAGTATCAAATACTGCCC
--------------------AGGAGAAATTATCCTTGGTGTGT 	1
--------------------AGGAGAAATTATCCTTGGTGTGTT 	1
---------------------GGAGAAATTATCCTTGGTGTGTTG 	1
---------------------GGAGAAATTATCCTTGGTGTGTT 	107
---------------------GGAGAAATTATCCTTGGTGTG 	15
---------------------GGAGAAATTATCCTTGGTGT 	5
---------------------GGAGAAATTATCCTTGGTGTGT 	133
------------------------GAAATTATCCTTGGTGTGTT 	2
------------------------GAAATTATCCTTGGTGTGT 	3
-------------------------AAATTATCCTTGGTGTGTT 	1
-------------------------------------------------------------CATACAAGGATAATTTCTTTTT 	8
-------------------------------------------------------------CATACAAGGATAATTTCTTTT 	2
---------------------------------------------------------------TACAAGGATAATTTCTTTTT 	1
----------------------------------------------------------------ACAAGGATAATTTCTTTTT 	2


Overlaps with: MNEST032201 MNEST032202
Overlaps with miRBase pre-miRNAs: mmu-mir-539
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
7 Mus musculus GSM539874 GGAGAAATTATCCTTGGTGTGT ATACAAGGATAATTTCTTTTT up 1 1


Secondary structure

GTGCTACTGTTTCATACTTGAGGAGAAATTATCCTTGGTGTGTTGGCTCTTTTGGATGAATCATACAAGGATAATTTCTTTTTGAGTATCAAATACTGCCC
---------------------GGAGAAATTATCCTTGGTGTGTT 	3
---------------------GGAGAAATTATCCTTGGTGTGT 	10
---------------------GGAGAAATTATCCTTGGTGTG 	1
---------------------GGAGAAATTATCCTTGGTGT 	2
-------------------------------------------------------------CATACAAGGATAATTTCTTTTT 	2


Overlaps with: MNEST032201 MNEST032202
Overlaps with miRBase pre-miRNAs: mmu-mir-539
HuntMi prediction: true miRNA