miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: GGATACATTCAGTATACGTTTA

selected species: Drosophila melanogaster



2 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Drosophila melanogaster GSM286605-9793 GGATACATTCAGTATACGTTTA TTACGTATACTGAAGGTATACCGG down 2 2


Secondary structure

ACGTTGTTAGTGCTCTCTCGTGTTACGTATACTGAAGGTATACCGGATAGGATACACTCAGGATACATTCAGTATACGTTTACGAGGTCGCACAGAATCGC
-----------------------------------------------------------AGGATACATTCAGTATACGTTTA 	3
------------------------------------------------------------GGATACATTCAGTATACGTTT 	2
------------------------------------------------------------GGATACATTCAGTATACGTTTA 	34

Overlaps with: MNEST036230 MNEST036231 MNEST036745 MNEST036746 MNEST037186 MNEST037187 MNEST037322 MNEST037323 MNEST037557 MNEST037558
Overlaps with miRBase pre-miRNAs: dya-mir-iab-4 dme-mir-iab-8 dsi-mir-iab-4 dme-mir-iab-4 dse-mir-iab-4 der-mir-iab-4
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Drosophila melanogaster GSM286607-9796 GGATACATTCAGTATACGTTTA TTACGTATACTGAAGGTATACCGG down 2 2


Secondary structure

ACGTTGTTAGTGCTCTCTCGTGTTACGTATACTGAAGGTATACCGGATAGGATACACTCAGGATACATTCAGTATACGTTTACGAGGTCGCACAGAATCGC
----------------------TTACGTATACTGAAGGTATACCGG 	5
----------------------TTACGTATACTGAAGGTATACC 	1
-----------------------------------------------------------AGGATACATTCAGTATACGTTTA 	5
------------------------------------------------------------GGATACATTCAGTATACGTTTA 	21

Overlaps with: MNEST036230 MNEST036231 MNEST036745 MNEST036746 MNEST037186 MNEST037187 MNEST037322 MNEST037323 MNEST037557 MNEST037558
Overlaps with miRBase pre-miRNAs: dya-mir-iab-4 dme-mir-iab-8 dsi-mir-iab-4 dme-mir-iab-4 dse-mir-iab-4 der-mir-iab-4
HuntMi prediction: true miRNA