miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: GGATAGGTTGAATTCATCGT

selected species: Ciona intestinalis



5 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Ciona intestinalis GSM343283-14443 GGATAGGTTGAATTCATCGTGG ACAATGAAATTAACCTTCTCTG down 4 0


Secondary structure

TCATATTTTGGTCTGTTACGTCACAATGAAATTAACCTTCTCTGTGACGTCAGGATAGGTTGAATTCATCGTGGTGTAGCTGACTTCTATCTA
----------------------------------------------------GGATAGGTTGAATTCATCGTGG 	135
----------------------------------------------------GGATAGGTTGAATTCATCGTG 	23
----------------------------------------------------GGATAGGTTGAATTCATCG 	27

Overlaps with: MNEST024988 MNEST024989 MNEST024990 MNEST024991
Overlaps with miRBase pre-miRNAs: cin-mir-4015-2 cin-mir-4015-1
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Ciona intestinalis GSM343282-14442 GGATAGGTTGAATTCATCGTGG ACAATGAAATTAACCTTCTCTG down 4 0


Secondary structure

TCATATTTTGGTCTGTTACGTCACAATGAAATTAACCTTCTCTGTGACGTCAGGATAGGTTGAATTCATCGTGGTGTAGCTGACTTCTATCTA
--ATATTTTGGTCTGTTACGTC 	1
----------------------------------------------------GGATAGGTTGAATTCATCGTGG 	81
----------------------------------------------------GGATAGGTTGAATTCATCGTG 	54
----------------------------------------------------GGATAGGTTGAATTCATCGT 	1
----------------------------------------------------GGATAGGTTGAATTCATCG 	26

Overlaps with: MNEST024988 MNEST024989 MNEST024990 MNEST024991
Overlaps with miRBase pre-miRNAs: cin-mir-4015-2 cin-mir-4015-1
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Ciona intestinalis GSM343284-14444 GGATAGGTTGAATTCATCGTGG ACAATGAAATTAACCTTCTCTG down 4 0


Secondary structure

TCATATTTTGGTCTGTTACGTCACAATGAAATTAACCTTCTCTGTGACGTCAGGATAGGTTGAATTCATCGTGGTGTAGCTGACTTCTATCTA
--ATATTTTGGTCTGTTACGTC 	7
--ATATTTTGGTCTGTTACGT 	8
---TATTTTGGTCTGTTACGTC 	1
----------------------------------------------------GGATAGGTTGAATTCATCGTGG 	753
----------------------------------------------------GGATAGGTTGAATTCATCGTG 	12
----------------------------------------------------GGATAGGTTGAATTCATCGT 	4
----------------------------------------------------GGATAGGTTGAATTCATCG 	91
-------------------------------------------------------TAGGTTGAATTCATCGTGG 	2

Overlaps with: MNEST024988 MNEST024989 MNEST024990 MNEST024991
Overlaps with miRBase pre-miRNAs: cin-mir-4015-2 cin-mir-4015-1
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Ciona intestinalis GSM343286 GGATAGGTTGAATTCATCGT AATGAAATTAACCTTCTCTG down 4 0


Secondary structure

ATATTTTGGTCTGTTACGTCACAATGAAATTAACCTTCTCTGTGACGTCAGGATAGGTTGAATTCATCGTGGTGTAGCTGACTTCTATC
ATATTTTGGTCTGTTACGTC 	63
-TATTTTGGTCTGTTACGTC 	1
--------------------------------------------------GGATAGGTTGAATTCATCGT 	295

Overlaps with: MNEST024988 MNEST024989 MNEST024990 MNEST024991
Overlaps with miRBase pre-miRNAs: cin-mir-4015-2 cin-mir-4015-1
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Ciona intestinalis GSM343285 GGATAGGTTGAATTCATCGTGG ACAATGAAATTAACCTTCTCTG down 4 0


Secondary structure

TCATATTTTGGTCTGTTACGTCACAATGAAATTAACCTTCTCTGTGACGTCAGGATAGGTTGAATTCATCGTGGTGTAGCTGACTTCTATCTA
----------------------------------------------------GGATAGGTTGAATTCATCGTGG 	15

Overlaps with: MNEST024988 MNEST024989 MNEST024990 MNEST024991
Overlaps with miRBase pre-miRNAs: cin-mir-4015-2 cin-mir-4015-1
HuntMi prediction: true miRNA