miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: GGGAACATTCCGGTAAGGGA

selected species: Ciona intestinalis



1 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Ciona intestinalis GSM343286 GGGAACATTCCGGTAAGGGA CCTTTCCACAATGTTCGAAA up 5 0


Secondary structure

AAAGAAAAACAACAAATTTTTAACGATTTTCGGGAACATTCCGGTAAGGGACGTATTTAACTTTCCTTTCCACAATGTTCGAAAAAATCGGTAAAACTTGCAACAGCCGTAC
------------------------------CGGGAACATTCCGGTAAGGG 	1
-------------------------------GGGAACATTCCGGTAAGGGA 	523
-------------------------------GGGAACATTCCGGTAAGGG 	21
-------------------------------------------------------------TTTCCTTTCCACAATGTTCG 	13
-------------------------------------------------------------TTTCCTTTCCACAATGTTC 	2
--------------------------------------------------------------TTCCTTTCCACAATGTTCGA 	6
------------------------------------------------------------------------------------AAATCGGTAAAACTTGCAAC 	4

Overlaps with: MNEST024955 MNEST024956
Overlaps with miRBase pre-miRNAs: cin-mir-4006g
HuntMi prediction: true miRNA