miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: GGGTGCATTGCGGAGCGAGC

selected species: Ciona intestinalis



3 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Ciona intestinalis GSM343283-14443 GGGTGCATTGCGGAGCGAGCT CCCGTTCCAACAATGTTCCGA up 3 2


Secondary structure

CATAATGACTTGGGTGCATTGCGGAGCGAGCTGAGATCGTACAGCCCGTTCCAACAATGTTCCGACGTCATAA
----------TGGGTGCATTGCGGAGCGAGC 	1
-----------GGGTGCATTGCGGAGCGAGCT 	5
-----------GGGTGCATTGCGGAGCGAGC 	3
-----------GGGTGCATTGCGGAGCGAG 	1
--------------------------------------------CCCGTTCCAACAATGTTCCG 	1


Overlaps with: MNEST025002 MNEST025003
Overlaps with miRBase pre-miRNAs: cin-mir-4019 cin-mir-4018a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Ciona intestinalis GSM343282-14442 GGGTGCATTGCGGAGCGAGCT CCCGTTCCAACAATGTTCCGA up 3 2


Secondary structure

CATAATGACTTGGGTGCATTGCGGAGCGAGCTGAGATCGTACAGCCCGTTCCAACAATGTTCCGACGTCATAA
-----------GGGTGCATTGCGGAGCGAGCTG 	1
-----------GGGTGCATTGCGGAGCGAGCT 	6
-----------GGGTGCATTGCGGAGCGAGC 	2
--------------------------------------------CCCGTTCCAACAATGTTCCGA 	2
--------------------------------------------CCCGTTCCAACAATGTTCCG 	2


Overlaps with: MNEST025002 MNEST025003
Overlaps with miRBase pre-miRNAs: cin-mir-4019 cin-mir-4018a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Ciona intestinalis GSM343286 GGGTGCATTGCGGAGCGAGC CCGTTCCAACAATGTTCCGA up 3 2


Secondary structure

CATAATGACTTGGGTGCATTGCGGAGCGAGCTGAGATCGTACAGCCCGTTCCAACAATGTTCCGACGTCATAA
-----------GGGTGCATTGCGGAGCGAGC 	7


Overlaps with: MNEST025002 MNEST025003
Overlaps with miRBase pre-miRNAs: cin-mir-4019 cin-mir-4018a
HuntMi prediction: true miRNA