miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: GTACGTCGGGAAATGTACGGTA

selected species: Bombyx mori



2 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Bombyx mori GSM449725_whole_body_clean GTACGTCGGGAAATGTACGGTA CCGTCACATTTCTTTATGTATCA down 1 1


Secondary structure

TTTACTATTTTACCGTCACATTTCTTTATGTATCACGGATGGAGACACGTGGTACGTCGGGAAATGTACGGTAAAATATGAT
---------------------------------------------------GTACGTCGGGAAATGTACGGTA 	13
---------------------------------------------------GTACGTCGGGAAATGTACGGT 	7
---------------------------------------------------GTACGTCGGGAAATGTACGGTAA 	1
---------------------------------------------------GTACGTCGGGAAATGTACGG 	1
---------------------------------------------------GTACGTCGGGAAATGTACGGTAAAA 	1

Overlaps with: MNEST035626
Overlaps with miRBase pre-miRNAs: bmo-mir-2762
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Bombyx mori GSM449726_Anterior_silkgland_clean GTACGTCGGGAAATGTACGGTA CCGTCACATTTCTTTATGTATCA down 1 1


Secondary structure

TTTACTATTTTACCGTCACATTTCTTTATGTATCACGGATGGAGACACGTGGTACGTCGGGAAATGTACGGTAAAATATGAT
-------------------------------------------------TGGTACGTCGGGAAATGTACGGT 	26
-------------------------------------------------TGGTACGTCGGGAAATGTACGG 	26
--------------------------------------------------GGTACGTCGGGAAATGTACGGT 	3
---------------------------------------------------GTACGTCGGGAAATGTACGGTA 	187
---------------------------------------------------GTACGTCGGGAAATGTACGGT 	139
---------------------------------------------------GTACGTCGGGAAATGTACGGTAA 	14
---------------------------------------------------GTACGTCGGGAAATGTACGG 	6
---------------------------------------------------GTACGTCGGGAAATGTACGGTAAA 	1
----------------------------------------------------TACGTCGGGAAATGTACGGTA 	10
----------------------------------------------------TACGTCGGGAAATGTACGGTAA 	4
----------------------------------------------------TACGTCGGGAAATGTACGGT 	2

Overlaps with: MNEST035626
Overlaps with miRBase pre-miRNAs: bmo-mir-2762
HuntMi prediction: true miRNA