miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

Please select library, species and/or miRNA sequence.

selected mature miRNA sequence: GTGCATTGTAGTTGCATTGCA

selected species: Bombyx mori

3 records found

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
1	Bombyx mori	GSM449725_whole_body_clean	GTGCATTGTAGTTGCATTGCA	CAATATGACTACAAGGCAAAT	up	3	0

Secondary structure

TTTTATTTGCAGTGCTTCGTAGAGGAGAAACTAAAGCGAGAGTGCATTGTAGTTGCATTGCACCGGTTCCATTAACGTGCAATATGACTACAAGGCAAATCCCGAATTAGTTGCATTCGACGCATGAAGCTCGCAGTT
-----------------------------------------GTGCATTGTAGTTGCATTGCA 	81
-----------------------------------------GTGCATTGTAGTTGCATTGC 	5
-----------------------------------------GTGCATTGTAGTTGCATTG 	1
--------------------------------------------CATTGTAGTTGCATTGCAC 	21
--------------------------------------------CATTGTAGTTGCATTGCACC 	2
------------------------------------------------------------------------------GCAATATGACTACAAGGCAAAT 	2
-------------------------------------------------------------------------------CAATATGACTACAAGGCAAATC 	8
-------------------------------------------------------------------------------CAATATGACTACAAGGCAAAT 	2

Overlaps with: MNEST035530
Overlaps with miRBase pre-miRNAs: bmo-mir-33
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
2	Bombyx mori	GSM449726_Anterior_silkgland_clean	GTGCATTGTAGTTGCATTGCA	CAATATGACTACAAGGCAAAT	up	3	0

Secondary structure

TTTTATTTGCAGTGCTTCGTAGAGGAGAAACTAAAGCGAGAGTGCATTGTAGTTGCATTGCACCGGTTCCATTAACGTGCAATATGACTACAAGGCAAATCCCGAATTAGTTGCATTCGACGCATGAAGCTCGCAGTT
----------------------------------------AGTGCATTGTAGTTGCATTGCA 	3
-----------------------------------------GTGCATTGTAGTTGCATTGCA 	486
-----------------------------------------GTGCATTGTAGTTGCATTGC 	76
-----------------------------------------GTGCATTGTAGTTGCATTG 	9
-----------------------------------------GTGCATTGTAGTTGCATTGCAC 	5
--------------------------------------------CATTGTAGTTGCATTGCACC 	2
-----------------------------------------------------------------------------TGCAATATGACTACAAGGCAAAT 	1
------------------------------------------------------------------------------GCAATATGACTACAAGGCAAATC 	3
------------------------------------------------------------------------------GCAATATGACTACAAGGCAAAT 	2
------------------------------------------------------------------------------GCAATATGACTACAAGGCAAA 	1
-------------------------------------------------------------------------------CAATATGACTACAAGGCAAATC 	43
-------------------------------------------------------------------------------CAATATGACTACAAGGCAAAT 	22
-------------------------------------------------------------------------------CAATATGACTACAAGGCAAA 	1
--------------------------------------------------------------------------------AATATGACTACAAGGCAAAT 	2

Overlaps with: MNEST035530
Overlaps with miRBase pre-miRNAs: bmo-mir-33
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
3	Bombyx mori	GSM449727_Posterior_silkgland_clean	GTGCATTGTAGTTGCATTGCA	CAATATGACTACAAGGCAAAT	up	3	0

Secondary structure

TTTTATTTGCAGTGCTTCGTAGAGGAGAAACTAAAGCGAGAGTGCATTGTAGTTGCATTGCACCGGTTCCATTAACGTGCAATATGACTACAAGGCAAATCCCGAATTAGTTGCATTCGACGCATGAAGCTCGCAGTT
-----------------------------------------GTGCATTGTAGTTGCATTGCA 	36
-----------------------------------------GTGCATTGTAGTTGCATTGC 	11
-----------------------------------------GTGCATTGTAGTTGCATTGCAC 	3
-----------------------------------------GTGCATTGTAGTTGCATTG 	2
------------------------------------------------------------------------------GCAATATGACTACAAGGCAAAT 	1
-------------------------------------------------------------------------------CAATATGACTACAAGGCAAATC 	4
-------------------------------------------------------------------------------CAATATGACTACAAGGCAAAT 	3
-------------------------------------------------------------------------------CAATATGACTACAAGGCAAA 	1

Overlaps with: MNEST035530
Overlaps with miRBase pre-miRNAs: bmo-mir-33
HuntMi prediction: true miRNA