miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

Please select library, species and/or miRNA sequence.

selected mature miRNA sequence: GTGCATTGTAGTTGCATTGCA

selected species: Homo sapiens

16 records found

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
1	Homo sapiens	GSM569185	GTGCATTGTAGTTGCATTGCA	CAATGTTTCCACAGTGCATCA	up	4	0

Secondary structure

ACCTCCTGGCGGGCAGCTGTGGTGCATTGTAGTTGCATTGCATGTTCTGGTGGTACCCATGCAATGTTTCCACAGTGCATCACAGAGGCCTGCCTGGCCC
ACCTCCTGGCGGGCAGCTGTGG 	1
-CCTCCTGGCGGGCAGCTGTG 	19
-CCTCCTGGCGGGCAGCTGT 	1
-CCTCCTGGCGGGCAGCTGTGG 	1
--CTCCTGGCGGGCAGCTGTGG 	2
--CTCCTGGCGGGCAGCTGTG 	85
---------------------GTGCATTGTAGTTGCATTGCA 	111
---------------------GTGCATTGTAGTTGCATTG 	5
---------------------GTGCATTGTAGTTGCATTGC 	12
---------------------GTGCATTGTAGTTGCATTGCATG 	1
---------------------GTGCATTGTAGTTGCATTGCAT 	4
------------------------------------------TGTTCTGGTGGTACCCATG 	5
-------------------------------------------------------------CAATGTTTCCACAGTGCATCA 	9
-------------------------------------------------------------CAATGTTTCCACAGTGCATC 	4
-------------------------------------------------------------CAATGTTTCCACAGTGCATCAC 	2
-------------------------------------------------------------CAATGTTTCCACAGTGCAT 	4
--------------------------------------------------------------AATGTTTCCACAGTGCATCA 	1

Overlaps with: MNEST028284 MNEST028399 MNEST030071 MNEST030185
Overlaps with miRBase pre-miRNAs: ptr-mir-33a ggo-mir-33 ppa-mir-33 hsa-mir-33a
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
2	Homo sapiens	GSM565979-9647	GTGCATTGTAGTTGCATTGCA	CAATGTTTCCACAGTGCATCA	up	4	0

Secondary structure

ACCTCCTGGCGGGCAGCTGTGGTGCATTGTAGTTGCATTGCATGTTCTGGTGGTACCCATGCAATGTTTCCACAGTGCATCACAGAGGCCTGCCTGGCCC
-CCTCCTGGCGGGCAGCTGTG 	2
--CTCCTGGCGGGCAGCTGTG 	1
---------------------GTGCATTGTAGTTGCATTGCA 	196
---------------------GTGCATTGTAGTTGCATTGC 	57
---------------------GTGCATTGTAGTTGCATTG 	2
------------------------------------------TGTTCTGGTGGTACCCATG 	4
-------------------------------------------------------------CAATGTTTCCACAGTGCATCA 	2

Overlaps with: MNEST028284 MNEST028399 MNEST030071 MNEST030185
Overlaps with miRBase pre-miRNAs: ptr-mir-33a ggo-mir-33 ppa-mir-33 hsa-mir-33a
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
3	Homo sapiens	GSM494810_Normal_2	GTGCATTGTAGTTGCATTGCA	CAATGTTTCCACAGTGCATCA	up	4	0

Secondary structure

ACCTCCTGGCGGGCAGCTGTGGTGCATTGTAGTTGCATTGCATGTTCTGGTGGTACCCATGCAATGTTTCCACAGTGCATCACAGAGGCCTGCCTGGCCC
--CTCCTGGCGGGCAGCTGTG 	1
---------------------GTGCATTGTAGTTGCATTGCA 	189
---------------------GTGCATTGTAGTTGCATTGC 	93
---------------------GTGCATTGTAGTTGCATTG 	4
----------------------------------------------------------ATGCAATGTTTCCACAGTG 	1
-------------------------------------------------------------CAATGTTTCCACAGTGCATC 	3
-------------------------------------------------------------CAATGTTTCCACAGTGCATCA 	2
-------------------------------------------------------------CAATGTTTCCACAGTGCAT 	2

Overlaps with: MNEST028284 MNEST028399 MNEST030071 MNEST030185
Overlaps with miRBase pre-miRNAs: ptr-mir-33a ggo-mir-33 ppa-mir-33 hsa-mir-33a
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
4	Homo sapiens	GSM531974	GTGCATTGTAGTTGCATTGCA	CAATGTTTCCACAGTGCATCA	up	4	0

Secondary structure

ACCTCCTGGCGGGCAGCTGTGGTGCATTGTAGTTGCATTGCATGTTCTGGTGGTACCCATGCAATGTTTCCACAGTGCATCACAGAGGCCTGCCTGGCCC
--CTCCTGGCGGGCAGCTGTG 	1
---------------------GTGCATTGTAGTTGCATTGCA 	45
---------------------GTGCATTGTAGTTGCATTGC 	35
---------------------GTGCATTGTAGTTGCATTG 	6
---------------------GTGCATTGTAGTTGCATTGCAT 	1
-------------------------------------------------------------CAATGTTTCCACAGTGCATCA 	2

Overlaps with: MNEST028284 MNEST028399 MNEST030071 MNEST030185
Overlaps with miRBase pre-miRNAs: ptr-mir-33a ggo-mir-33 ppa-mir-33 hsa-mir-33a
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
5	Homo sapiens	GSM494809_Normal_1	GTGCATTGTAGTTGCATTGCA	CAATGTTTCCACAGTGCATCA	up	4	0

Secondary structure

ACCTCCTGGCGGGCAGCTGTGGTGCATTGTAGTTGCATTGCATGTTCTGGTGGTACCCATGCAATGTTTCCACAGTGCATCACAGAGGCCTGCCTGGCCC
ACCTCCTGGCGGGCAGCTGTG 	3
-CCTCCTGGCGGGCAGCTGTG 	11
--CTCCTGGCGGGCAGCTGTG 	20
---------------------GTGCATTGTAGTTGCATTGCA 	631
---------------------GTGCATTGTAGTTGCATTGC 	175
---------------------GTGCATTGTAGTTGCATTGCAT 	5
---------------------GTGCATTGTAGTTGCATTG 	3
------------------------------------------TGTTCTGGTGGTACCCATG 	3
-------------------------------------------------------------CAATGTTTCCACAGTGCATCA 	6
-------------------------------------------------------------CAATGTTTCCACAGTGCAT 	3
-------------------------------------------------------------CAATGTTTCCACAGTGCATC 	1

Overlaps with: MNEST028284 MNEST028399 MNEST030071 MNEST030185
Overlaps with miRBase pre-miRNAs: ptr-mir-33a ggo-mir-33 ppa-mir-33 hsa-mir-33a
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
6	Homo sapiens	GSM565978-9532	GTGCATTGTAGTTGCATTGCA	CAATGTTTCCACAGTGCATCA	up	4	0

Secondary structure

ACCTCCTGGCGGGCAGCTGTGGTGCATTGTAGTTGCATTGCATGTTCTGGTGGTACCCATGCAATGTTTCCACAGTGCATCACAGAGGCCTGCCTGGCCC
-CCTCCTGGCGGGCAGCTGTG 	8
--CTCCTGGCGGGCAGCTGTG 	24
---------------------GTGCATTGTAGTTGCATTGCA 	588
---------------------GTGCATTGTAGTTGCATTGC 	126
---------------------GTGCATTGTAGTTGCATTGCAT 	4
---------------------GTGCATTGTAGTTGCATTG 	4
-------------------------------------------------------------CAATGTTTCCACAGTGCATCA 	2
-------------------------------------------------------------CAATGTTTCCACAGTGCATC 	1
-------------------------------------------------------------CAATGTTTCCACAGTGCAT 	1

Overlaps with: MNEST028284 MNEST028399 MNEST030071 MNEST030185
Overlaps with miRBase pre-miRNAs: ptr-mir-33a ggo-mir-33 ppa-mir-33 hsa-mir-33a
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
7	Homo sapiens	GSM569186	GTGCATTGTAGTTGCATTGCA	CAATGTTTCCACAGTGCATCA	up	4	0

Secondary structure

ACCTCCTGGCGGGCAGCTGTGGTGCATTGTAGTTGCATTGCATGTTCTGGTGGTACCCATGCAATGTTTCCACAGTGCATCACAGAGGCCTGCCTGGCCC
ACCTCCTGGCGGGCAGCTGTGG 	1
-CCTCCTGGCGGGCAGCTGTG 	30
-CCTCCTGGCGGGCAGCTGTGG 	2
--CTCCTGGCGGGCAGCTGTGG 	3
--CTCCTGGCGGGCAGCTGTG 	80
---TCCTGGCGGGCAGCTGTGG 	14
---------------------GTGCATTGTAGTTGCATTGCA 	85
---------------------GTGCATTGTAGTTGCATTGC 	8
---------------------GTGCATTGTAGTTGCATTG 	3
---------------------GTGCATTGTAGTTGCATTGCAT 	14
------------------------------------------TGTTCTGGTGGTACCCATG 	1
-------------------------------------------------------------CAATGTTTCCACAGTGCATCA 	8
-------------------------------------------------------------CAATGTTTCCACAGTGCAT 	2

Overlaps with: MNEST028284 MNEST028399 MNEST030071 MNEST030185
Overlaps with miRBase pre-miRNAs: ptr-mir-33a ggo-mir-33 ppa-mir-33 hsa-mir-33a
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
8	Homo sapiens	GSM569188	GTGCATTGTAGTTGCATTGCA	CAATGTTTCCACAGTGCATCA	up	4	0

Secondary structure

ACCTCCTGGCGGGCAGCTGTGGTGCATTGTAGTTGCATTGCATGTTCTGGTGGTACCCATGCAATGTTTCCACAGTGCATCACAGAGGCCTGCCTGGCCC
-CCTCCTGGCGGGCAGCTGTG 	6
--CTCCTGGCGGGCAGCTGTG 	19
---TCCTGGCGGGCAGCTGTGG 	3
---------------------GTGCATTGTAGTTGCATTG 	2
---------------------GTGCATTGTAGTTGCATTGC 	2
---------------------GTGCATTGTAGTTGCATTGCAT 	13
---------------------GTGCATTGTAGTTGCATTGCA 	58
------------------------------------------TGTTCTGGTGGTACCCATG 	2
----------------------------------------------------------ATGCAATGTTTCCACAGTGCA 	1
-------------------------------------------------------------CAATGTTTCCACAGTGCATC 	1

Overlaps with: MNEST028284 MNEST028399 MNEST030071 MNEST030185
Overlaps with miRBase pre-miRNAs: ptr-mir-33a ggo-mir-33 ppa-mir-33 hsa-mir-33a
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
9	Homo sapiens	GSM569187	GTGCATTGTAGTTGCATTGCA	CAATGTTTCCACAGTGCATCA	up	4	0

Secondary structure

ACCTCCTGGCGGGCAGCTGTGGTGCATTGTAGTTGCATTGCATGTTCTGGTGGTACCCATGCAATGTTTCCACAGTGCATCACAGAGGCCTGCCTGGCCC
ACCTCCTGGCGGGCAGCTGTG 	1
-CCTCCTGGCGGGCAGCTGTG 	14
-CCTCCTGGCGGGCAGCTGT 	2
--CTCCTGGCGGGCAGCTGTG 	45
---TCCTGGCGGGCAGCTGTGG 	1
---------------------GTGCATTGTAGTTGCATTGCA 	55
---------------------GTGCATTGTAGTTGCATTG 	3
---------------------GTGCATTGTAGTTGCATTGCAT 	4
---------------------GTGCATTGTAGTTGCATTGC 	9
------------------------CATTGTAGTTGCATTGCATGT 	1
------------------------------------------TGTTCTGGTGGTACCCATG 	4
-------------------------------------------------------------CAATGTTTCCACAGTGCAT 	2
-------------------------------------------------------------CAATGTTTCCACAGTGCATCA 	5

Overlaps with: MNEST028284 MNEST028399 MNEST030071 MNEST030185
Overlaps with miRBase pre-miRNAs: ptr-mir-33a ggo-mir-33 ppa-mir-33 hsa-mir-33a
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
10	Homo sapiens	GSM651908	GTGCATTGTAGTTGCATTGCA	CAATGTTTCCACAGTGCATCA	up	4	0

Secondary structure

ACCTCCTGGCGGGCAGCTGTGGTGCATTGTAGTTGCATTGCATGTTCTGGTGGTACCCATGCAATGTTTCCACAGTGCATCACAGAGGCCTGCCTGGCCC
---------------------GTGCATTGTAGTTGCATTGCA 	40
---------------------GTGCATTGTAGTTGCATTGC 	18
---------------------GTGCATTGTAGTTGCATTG 	11
---------------------GTGCATTGTAGTTGCATTGCAT 	2
-------------------------------------------------------------CAATGTTTCCACAGTGCATC 	8
-------------------------------------------------------------CAATGTTTCCACAGTGCATCA 	4
-------------------------------------------------------------CAATGTTTCCACAGTGCAT 	7

Overlaps with: MNEST028284 MNEST028399 MNEST030071 MNEST030185
Overlaps with miRBase pre-miRNAs: ptr-mir-33a ggo-mir-33 ppa-mir-33 hsa-mir-33a
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
11	Homo sapiens	GSM494811_K562	GTGCATTGTAGTTGCATTGCA	CAATGTTTCCACAGTGCATCA	up	4	0

Secondary structure

ACCTCCTGGCGGGCAGCTGTGGTGCATTGTAGTTGCATTGCATGTTCTGGTGGTACCCATGCAATGTTTCCACAGTGCATCACAGAGGCCTGCCTGGCCC
-CCTCCTGGCGGGCAGCTGTG 	3
--CTCCTGGCGGGCAGCTGTG 	6
---------------------GTGCATTGTAGTTGCATTGCA 	519
---------------------GTGCATTGTAGTTGCATTGC 	97
---------------------GTGCATTGTAGTTGCATTG 	6
---------------------GTGCATTGTAGTTGCATTGCAT 	1
-----------------------GCATTGTAGTTGCATTGCA 	1
-------------------------------------------------------------CAATGTTTCCACAGTGCATCA 	7

Overlaps with: MNEST028284 MNEST028399 MNEST030071 MNEST030185
Overlaps with miRBase pre-miRNAs: ptr-mir-33a ggo-mir-33 ppa-mir-33 hsa-mir-33a
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
12	Homo sapiens	GSM531978	GTGCATTGTAGTTGCATTGCA	CAATGTTTCCACAGTGCATCA	up	4	0

Secondary structure

ACCTCCTGGCGGGCAGCTGTGGTGCATTGTAGTTGCATTGCATGTTCTGGTGGTACCCATGCAATGTTTCCACAGTGCATCACAGAGGCCTGCCTGGCCC
-CCTCCTGGCGGGCAGCTGTG 	1
--CTCCTGGCGGGCAGCTGTG 	4
---------------------GTGCATTGTAGTTGCATTGCA 	86
---------------------GTGCATTGTAGTTGCATTGC 	75
---------------------GTGCATTGTAGTTGCATTG 	3
-------------------------------------------------------------CAATGTTTCCACAGTGCAT 	4

Overlaps with: MNEST028284 MNEST028399 MNEST030071 MNEST030185
Overlaps with miRBase pre-miRNAs: ptr-mir-33a ggo-mir-33 ppa-mir-33 hsa-mir-33a
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
13	Homo sapiens	GSM569189	GTGCATTGTAGTTGCATTGCA	CAATGTTTCCACAGTGCATCA	up	4	0

Secondary structure

ACCTCCTGGCGGGCAGCTGTGGTGCATTGTAGTTGCATTGCATGTTCTGGTGGTACCCATGCAATGTTTCCACAGTGCATCACAGAGGCCTGCCTGGCCC
ACCTCCTGGCGGGCAGCTGTG 	2
-CCTCCTGGCGGGCAGCTGTG 	2
--CTCCTGGCGGGCAGCTGTG 	8
---------------------GTGCATTGTAGTTGCATTGCA 	61
---------------------GTGCATTGTAGTTGCATTG 	2
---------------------GTGCATTGTAGTTGCATTGCAT 	7
---------------------GTGCATTGTAGTTGCATTGC 	1
-------------------------------------------------------------CAATGTTTCCACAGTGCATCA 	5
-------------------------------------------------------------CAATGTTTCCACAGTGCAT 	1

Overlaps with: MNEST028284 MNEST028399 MNEST030071 MNEST030185
Overlaps with miRBase pre-miRNAs: ptr-mir-33a ggo-mir-33 ppa-mir-33 hsa-mir-33a
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
14	Homo sapiens	GSM494812_HL60	GTGCATTGTAGTTGCATTGCA	CAATGTTTCCACAGTGCATCA	up	4	0

Secondary structure

ACCTCCTGGCGGGCAGCTGTGGTGCATTGTAGTTGCATTGCATGTTCTGGTGGTACCCATGCAATGTTTCCACAGTGCATCACAGAGGCCTGCCTGGCCC
ACCTCCTGGCGGGCAGCTGTG 	1
-CCTCCTGGCGGGCAGCTGTG 	11
--CTCCTGGCGGGCAGCTGTG 	7
---------------------GTGCATTGTAGTTGCATTGCAT 	24
---------------------GTGCATTGTAGTTGCATTGCA 	1681
---------------------GTGCATTGTAGTTGCATTGC 	550
---------------------GTGCATTGTAGTTGCATTG 	14
------------------------------------------TGTTCTGGTGGTACCCATG 	2
----------------------------------------------------------ATGCAATGTTTCCACAGTGCATC 	1
-------------------------------------------------------------CAATGTTTCCACAGTGCATCA 	21
-------------------------------------------------------------CAATGTTTCCACAGTGCATC 	2
-------------------------------------------------------------CAATGTTTCCACAGTGCAT 	1
--------------------------------------------------------------AATGTTTCCACAGTGCATCA 	1

Overlaps with: MNEST028284 MNEST028399 MNEST030071 MNEST030185
Overlaps with miRBase pre-miRNAs: ptr-mir-33a ggo-mir-33 ppa-mir-33 hsa-mir-33a
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
15	Homo sapiens	GSM531986-13294	GTGCATTGTAGTTGCATTGCA	CAATGTTTCCACAGTGCATCA	up	4	0

Secondary structure

ACCTCCTGGCGGGCAGCTGTGGTGCATTGTAGTTGCATTGCATGTTCTGGTGGTACCCATGCAATGTTTCCACAGTGCATCACAGAGGCCTGCCTGGCCC
---------------------GTGCATTGTAGTTGCATTGCA 	54
---------------------GTGCATTGTAGTTGCATTGC 	16
---------------------GTGCATTGTAGTTGCATTG 	5
---------------------GTGCATTGTAGTTGCATTGCAT 	1
----------------------------------------------------------ATGCAATGTTTCCACAGTG 	4
-------------------------------------------------------------CAATGTTTCCACAGTGCATCA 	8
-------------------------------------------------------------CAATGTTTCCACAGTGCAT 	9
-------------------------------------------------------------CAATGTTTCCACAGTGCATC 	2

Overlaps with: MNEST028284 MNEST028399 MNEST030071 MNEST030185
Overlaps with miRBase pre-miRNAs: ptr-mir-33a ggo-mir-33 ppa-mir-33 hsa-mir-33a
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
16	Homo sapiens	GSM531975	GTGCATTGTAGTTGCATTGCA	CAATGTTTCCACAGTGCATCA	up	4	0

Secondary structure

ACCTCCTGGCGGGCAGCTGTGGTGCATTGTAGTTGCATTGCATGTTCTGGTGGTACCCATGCAATGTTTCCACAGTGCATCACAGAGGCCTGCCTGGCCC
ACCTCCTGGCGGGCAGCTGTG 	1
---------------------GTGCATTGTAGTTGCATTGCAT 	26
---------------------GTGCATTGTAGTTGCATTGCA 	512
---------------------GTGCATTGTAGTTGCATTGC 	242
---------------------GTGCATTGTAGTTGCATTG 	27
----------------------TGCATTGTAGTTGCATTGCA 	1
------------------------------------------TGTTCTGGTGGTACCCATG 	2
-------------------------------------------------------------CAATGTTTCCACAGTGCAT 	4
-------------------------------------------------------------CAATGTTTCCACAGTGCATC 	1
-------------------------------------------------------------CAATGTTTCCACAGTGCATCA 	1

Overlaps with: MNEST028284 MNEST028399 MNEST030071 MNEST030185
Overlaps with miRBase pre-miRNAs: ptr-mir-33a ggo-mir-33 ppa-mir-33 hsa-mir-33a
HuntMi prediction: true miRNA