miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: GTTCAAGAAAGCTGTGGGAAA

selected species: Vitis vinifera



1 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Vitis vinifera GSM458927 GTTCAAGAAAGCTGTGGGAAA TTCCACAGCTTTCTTGAACTT down 0 0


Secondary structure

AACTTTTTCTCTCTGCAAGTCCTGCCATGCTTTTCCACAGCTTTCTTGAACTTCTTCTCCCTGTTTGGTGGTCTCCTACGTTTACCCATCCACTGAAGTTCAAGAAAGCTGTGGGAAACCATGGCTTTTCAGGACTTCTGCTTGCTG
--------------------------------TTCCACAGCTTTCTTGAACTT 	7
--------------------------------TTCCACAGCTTTCTTGAACT 	1
--------------------------------TTCCACAGCTTTCTTGAAC 	1
-----------------------------------------------------------------------------------------------AAGTTCAAGAAAGCTGTGGGAA 	1
------------------------------------------------------------------------------------------------AGTTCAAGAAAGCTGTGGGAAA 	2
------------------------------------------------------------------------------------------------AGTTCAAGAAAGCTGTGGGAA 	11
-------------------------------------------------------------------------------------------------GTTCAAGAAAGCTGTGGGAAAC 	1
-------------------------------------------------------------------------------------------------GTTCAAGAAAGCTGTGGGAAA 	1756
-------------------------------------------------------------------------------------------------GTTCAAGAAAGCTGTGGGAA 	36
-------------------------------------------------------------------------------------------------GTTCAAGAAAGCTGTGGGA 	10
--------------------------------------------------------------------------------------------------TTCAAGAAAGCTGTGGGAAAC 	5
--------------------------------------------------------------------------------------------------TTCAAGAAAGCTGTGGGAAA 	872
--------------------------------------------------------------------------------------------------TTCAAGAAAGCTGTGGGAA 	33
---------------------------------------------------------------------------------------------------TCAAGAAAGCTGTGGGAAA 	4

Overlaps with: MNEST041661 MNEST054869
Overlaps with miRBase pre-miRNAs: vvi-MIR396b
HuntMi prediction: true miRNA