miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: GTTCCTGCTGAACTGAGCCAGT

selected species: Mus musculus



4 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Mus musculus GSM527276 GTTCCTGCTGAACTGAGCCAGT TGATATCAGCTCAGTAGGCACCG up 4 1


Secondary structure

TTGCTCAAGGGCTCGACTCCTGTTCCTGCTGAACTGAGCCAGTGTGTGAAATGAGAACTGATATCAGCTCAGTAGGCACCGGAGGGCGGGTCCAATCAC
--------------------TGTTCCTGCTGAACTGAGCCAG 	1
---------------------GTTCCTGCTGAACTGAGCCAGT 	5
----------------------------------------------------------TGATATCAGCTCAGTAGGCA 	1
----------------------------------------------------------TGATATCAGCTCAGTAGGCACCG 	1

Overlaps with: MNEST033024
Overlaps with miRBase pre-miRNAs: mmu-mir-3074-1 rno-mir-3074 rno-mir-24-1 mmu-mir-24-1
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Mus musculus GSM527276 GTTCCTGCTGAACTGAGCCAGT TGTTTCAGCTCAGTAGGCACGG up 3 0


Secondary structure

GCTGGACTCCTGTTCCTGCTGAACTGAGCCAGTGCACTGGAATCAACTGTTTCAGCTCAGTAGGCACGGGAGGCGGA
----------TGTTCCTGCTGAACTGAGCCAG 	1
-----------GTTCCTGCTGAACTGAGCCAGT 	5

Overlaps with: MNEST032513 MNEST032514
Overlaps with miRBase pre-miRNAs: mmu-mir-3074-2 mmu-mir-24-2
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Mus musculus GSM527277-2110 GTTCCTGCTGAACTGAGCCAGT TGATATCAGCTCAGTAGGCACCG up 4 1


Secondary structure

TTGCTCAAGGGCTCGACTCCTGTTCCTGCTGAACTGAGCCAGTGTGTGAAATGAGAACTGATATCAGCTCAGTAGGCACCGGAGGGCGGGTCCAATCAC
--------------------TGTTCCTGCTGAACTGAGCCAG 	2
---------------------GTTCCTGCTGAACTGAGCCAGT 	9
---------------------GTTCCTGCTGAACTGAGCCAG 	3
----------------------------------------------------------TGATATCAGCTCAGTAGGCACCG 	2
----------------------------------------------------------TGATATCAGCTCAGTAGGCAC 	3
-----------------------------------------------------------GATATCAGCTCAGTAGGCACCG 	5

Overlaps with: MNEST033024
Overlaps with miRBase pre-miRNAs: mmu-mir-3074-1 rno-mir-3074 rno-mir-24-1 mmu-mir-24-1
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Mus musculus GSM527277-2110 GTTCCTGCTGAACTGAGCCAGT TGTTTCAGCTCAGTAGGCACGG up 3 0


Secondary structure

GCTGGACTCCTGTTCCTGCTGAACTGAGCCAGTGCACTGGAATCAACTGTTTCAGCTCAGTAGGCACGGGAGGCGGA
----------TGTTCCTGCTGAACTGAGCCAG 	2
-----------GTTCCTGCTGAACTGAGCCAGT 	9
-----------GTTCCTGCTGAACTGAGCCAG 	3

Overlaps with: MNEST032513 MNEST032514
Overlaps with miRBase pre-miRNAs: mmu-mir-3074-2 mmu-mir-24-2
HuntMi prediction: true miRNA