miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: GTTGAGGCGAGTTGAAGACTTA

selected species: Danio rerio



2 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Danio rerio GSM540642 GTTGAGGCGAGTTGAAGACTTA AGTCTTCAATTCCTCCCAGCCC down 3 0


Secondary structure

CAGTCACCTGTATGTCATTTTCAGTCTTCAATTCCTCCCAGCCCGTACCCATCGAAACTGTGAGTTGAGGCGAGTTGAAGACTTAAAGTGCTGTACAGATTCAA
--------------------TCAGTCTTCAATTCCTCCCAGC 	3
---------------------------------------------------------------GTTGAGGCGAGTTGAAGACTTA 	10
---------------------------------------------------------------GTTGAGGCGAGTTGAAGACTT 	1
---------------------------------------------------------------GTTGAGGCGAGTTGAAGACT 	2
----------------------------------------------------------------TTGAGGCGAGTTGAAGACTTAA 	1
----------------------------------------------------------------TTGAGGCGAGTTGAAGACTTA 	2
----------------------------------------------------------------TTGAGGCGAGTTGAAGACTT 	1

Overlaps with: MNEST034494
Overlaps with miRBase pre-miRNAs: dre-mir-727
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Danio rerio GSM540643 GTTGAGGCGAGTTGAAGACTTA AGTCTTCAATTCCTCCCAGCCC down 3 0


Secondary structure

CAGTCACCTGTATGTCATTTTCAGTCTTCAATTCCTCCCAGCCCGTACCCATCGAAACTGTGAGTTGAGGCGAGTTGAAGACTTAAAGTGCTGTACAGATTCAA
--------------------TCAGTCTTCAATTCCTCCCAGC 	5
---------------------------------------------------------------GTTGAGGCGAGTTGAAGACTT 	1
---------------------------------------------------------------GTTGAGGCGAGTTGAAGACTTA 	17
----------------------------------------------------------------TTGAGGCGAGTTGAAGACTTA 	2
----------------------------------------------------------------TTGAGGCGAGTTGAAGACTTAA 	10
-----------------------------------------------------------------TGAGGCGAGTTGAAGACTTAAA 	1
-----------------------------------------------------------------TGAGGCGAGTTGAAGACTTA 	1
-----------------------------------------------------------------TGAGGCGAGTTGAAGACTTAA 	2

Overlaps with: MNEST034494
Overlaps with miRBase pre-miRNAs: dre-mir-727
HuntMi prediction: true miRNA