miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: GTTGGAAGCCTTCGTGGGAGA

selected species: Physcomitrella patens



6 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Physcomitrella patens GSM313212 GTTGGAAGCCTTCGTGGGAGA TCCCTCAAAGGCTTCCAACAA down 3 0


Secondary structure

TGGTTACAGGGTGTTCGTTTTTCTCCCTCAAAGGCTTCCAACAACAGTCGGAATTAACTCTGATGCGGCCATTATCACTGGTTGCAGTGAATTATTCTAGTTCTGCTGTTGGAAGCCTTCGTGGGAGACGAAAGAACCCTTGTTTGGA
---------------------TCTCCCTCAAAGGCTTCCAAC 	5
---------------------TCTCCCTCAAAGGCTTCCAA 	106
---------------------TCTCCCTCAAAGGCTTCCA 	22
-----------------------TCCCTCAAAGGCTTCCAACAACA 	9
-----------------------TCCCTCAAAGGCTTCCAAC 	5
-----------------------TCCCTCAAAGGCTTCCAACA 	26
-----------------------TCCCTCAAAGGCTTCCAACAAC 	14
-----------------------TCCCTCAAAGGCTTCCAACAA 	183
------------------------CCCTCAAAGGCTTCCAACAA 	1
------------------------CCCTCAAAGGCTTCCAACAACA 	3
------------------------CCCTCAAAGGCTTCCAACA 	2
------------------------CCCTCAAAGGCTTCCAACAAC 	1
--------------------------------------------------------------------------------------------------------GCTGTTGGAAGCCTTCGTGGGAGA 	7
---------------------------------------------------------------------------------------------------------CTGTTGGAAGCCTTCGTGGGAGAC 	1
---------------------------------------------------------------------------------------------------------CTGTTGGAAGCCTTCGTGGGAGA 	67
---------------------------------------------------------------------------------------------------------CTGTTGGAAGCCTTCGTGGGAG 	2
----------------------------------------------------------------------------------------------------------TGTTGGAAGCCTTCGTGGGAGAC 	2
----------------------------------------------------------------------------------------------------------TGTTGGAAGCCTTCGTGGGAG 	1
----------------------------------------------------------------------------------------------------------TGTTGGAAGCCTTCGTGGGAGA 	139
-----------------------------------------------------------------------------------------------------------GTTGGAAGCCTTCGTGGGAGAC 	14
-----------------------------------------------------------------------------------------------------------GTTGGAAGCCTTCGTGGGAG 	6
-----------------------------------------------------------------------------------------------------------GTTGGAAGCCTTCGTGGGAGA 	648
-----------------------------------------------------------------------------------------------------------GTTGGAAGCCTTCGTGGGA 	2
------------------------------------------------------------------------------------------------------------TTGGAAGCCTTCGTGGGAGA 	19
-------------------------------------------------------------------------------------------------------------TGGAAGCCTTCGTGGGAGA 	5


Overlaps with: MNEST039500 MNEST039501
Overlaps with miRBase pre-miRNAs: ppt-MIR477g
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Physcomitrella patens GSM313213 GTTGGAAGCCTTCGTGGGAGA TCCCTCAAAGGCTTCCAACAA down 3 0


Secondary structure

TGGTTACAGGGTGTTCGTTTTTCTCCCTCAAAGGCTTCCAACAACAGTCGGAATTAACTCTGATGCGGCCATTATCACTGGTTGCAGTGAATTATTCTAGTTCTGCTGTTGGAAGCCTTCGTGGGAGACGAAAGAACCCTTGTTTGGA
------------------TTTTCTCCCTCAAAGGCTTCC 	1
---------------------TCTCCCTCAAAGGCTTCCAAC 	10
---------------------TCTCCCTCAAAGGCTTCCAA 	125
---------------------TCTCCCTCAAAGGCTTCCA 	28
----------------------CTCCCTCAAAGGCTTCCAA 	1
----------------------CTCCCTCAAAGGCTTCCAACA 	1
-----------------------TCCCTCAAAGGCTTCCAACAACA 	13
-----------------------TCCCTCAAAGGCTTCCAACAACAG 	1
-----------------------TCCCTCAAAGGCTTCCAACA 	35
-----------------------TCCCTCAAAGGCTTCCAACAAC 	27
-----------------------TCCCTCAAAGGCTTCCAACAA 	192
------------------------CCCTCAAAGGCTTCCAACAA 	3
------------------------CCCTCAAAGGCTTCCAACAACA 	1
------------------------CCCTCAAAGGCTTCCAACAAC 	1
-------------------------CCTCAAAGGCTTCCAACAA 	2
-----------------------------------TTCCAACAACAGTCGGAATTAAC 	1
------------------------------------TCCAACAACAGTCGGAATTA 	1
--------------------------------------------------------------------------------------------------------GCTGTTGGAAGCCTTCGTGGGAGA 	12
--------------------------------------------------------------------------------------------------------GCTGTTGGAAGCCTTCGTGGGA 	1
--------------------------------------------------------------------------------------------------------GCTGTTGGAAGCCTTCGTGGGAG 	1
---------------------------------------------------------------------------------------------------------CTGTTGGAAGCCTTCGTGGGAGA 	49
----------------------------------------------------------------------------------------------------------TGTTGGAAGCCTTCGTGGGAGAC 	2
----------------------------------------------------------------------------------------------------------TGTTGGAAGCCTTCGTGGGAGA 	165
-----------------------------------------------------------------------------------------------------------GTTGGAAGCCTTCGTGGGAGAC 	8
-----------------------------------------------------------------------------------------------------------GTTGGAAGCCTTCGTGGGAGA 	692
-----------------------------------------------------------------------------------------------------------GTTGGAAGCCTTCGTGGGA 	3
-----------------------------------------------------------------------------------------------------------GTTGGAAGCCTTCGTGGGAG 	9
------------------------------------------------------------------------------------------------------------TTGGAAGCCTTCGTGGGAGA 	19
-------------------------------------------------------------------------------------------------------------TGGAAGCCTTCGTGGGAGA 	2


Overlaps with: MNEST039500 MNEST039501
Overlaps with miRBase pre-miRNAs: ppt-MIR477g
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Physcomitrella patens GSM313215 GTTGGAAGCCTTCGTGGGAGA TCCCTCAAAGGCTTCCAACAA down 3 0


Secondary structure

TGGTTACAGGGTGTTCGTTTTTCTCCCTCAAAGGCTTCCAACAACAGTCGGAATTAACTCTGATGCGGCCATTATCACTGGTTGCAGTGAATTATTCTAGTTCTGCTGTTGGAAGCCTTCGTGGGAGACGAAAGAACCCTTGTTTGGA
--------------------TTCTCCCTCAAAGGCTTCCAA 	1
---------------------TCTCCCTCAAAGGCTTCCA 	2
---------------------TCTCCCTCAAAGGCTTCCAAC 	9
---------------------TCTCCCTCAAAGGCTTCCAA 	26
----------------------CTCCCTCAAAGGCTTCCAA 	1
-----------------------TCCCTCAAAGGCTTCCAACAAC 	29
-----------------------TCCCTCAAAGGCTTCCAACAA 	15
------------------------CCCTCAAAGGCTTCCAACAAC 	2
-------------------------CCTCAAAGGCTTCCAACAAC 	1
---------------------------------------------------------------------------------------------------------CTGTTGGAAGCCTTCGTGGGAGA 	7
---------------------------------------------------------------------------------------------------------CTGTTGGAAGCCTTCGTGG 	1
----------------------------------------------------------------------------------------------------------TGTTGGAAGCCTTCGTGGGAGAC 	2
----------------------------------------------------------------------------------------------------------TGTTGGAAGCCTTCGTGGGAGA 	100
-----------------------------------------------------------------------------------------------------------GTTGGAAGCCTTCGTGGGAGAC 	1
-----------------------------------------------------------------------------------------------------------GTTGGAAGCCTTCGTGGGAG 	1
-----------------------------------------------------------------------------------------------------------GTTGGAAGCCTTCGTGGGAGA 	170
------------------------------------------------------------------------------------------------------------TTGGAAGCCTTCGTGGGAGA 	10
-----------------------------------------------------------------------------------------------------------------AGCCTTCGTGGGAGACGAAA 	1


Overlaps with: MNEST039500 MNEST039501
Overlaps with miRBase pre-miRNAs: ppt-MIR477g
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Physcomitrella patens GSM313216 GTTGGAAGCCTTCGTGGGAGA TCCCTCAAAGGCTTCCAACAA down 3 0


Secondary structure

TGGTTACAGGGTGTTCGTTTTTCTCCCTCAAAGGCTTCCAACAACAGTCGGAATTAACTCTGATGCGGCCATTATCACTGGTTGCAGTGAATTATTCTAGTTCTGCTGTTGGAAGCCTTCGTGGGAGACGAAAGAACCCTTGTTTGGA
------------------TTTTCTCCCTCAAAGGCTTCC 	1
--------------------TTCTCCCTCAAAGGCTTCCAA 	1
---------------------TCTCCCTCAAAGGCTTCCAAC 	72
---------------------TCTCCCTCAAAGGCTTCCAA 	124
---------------------TCTCCCTCAAAGGCTTCCA 	8
---------------------TCTCCCTCAAAGGCTTCCAACA 	1
----------------------CTCCCTCAAAGGCTTCCAA 	2
-----------------------TCCCTCAAAGGCTTCCAACAACA 	4
-----------------------TCCCTCAAAGGCTTCCAAC 	19
-----------------------TCCCTCAAAGGCTTCCAACAACAG 	3
-----------------------TCCCTCAAAGGCTTCCAACA 	10
-----------------------TCCCTCAAAGGCTTCCAACAAC 	229
-----------------------TCCCTCAAAGGCTTCCAACAA 	36
------------------------CCCTCAAAGGCTTCCAACAAC 	18
-------------------------CCTCAAAGGCTTCCAACAAC 	4
----------------------------------------------------------------------------------------------TTCTAGTTCTGCTGTTGGAAGC 	1
--------------------------------------------------------------------------------------------------------GCTGTTGGAAGCCTTCGTGGGAGA 	21
--------------------------------------------------------------------------------------------------------GCTGTTGGAAGCCTTCGTGGGAGAC 	1
--------------------------------------------------------------------------------------------------------GCTGTTGGAAGCCTTCGTGGGAG 	1
---------------------------------------------------------------------------------------------------------CTGTTGGAAGCCTTCGTGGGAGAC 	1
---------------------------------------------------------------------------------------------------------CTGTTGGAAGCCTTCGTGGGAGA 	156
---------------------------------------------------------------------------------------------------------CTGTTGGAAGCCTTCGTGGGAG 	2
----------------------------------------------------------------------------------------------------------TGTTGGAAGCCTTCGTGGGAGAC 	6
----------------------------------------------------------------------------------------------------------TGTTGGAAGCCTTCGTGGGAGA 	87
-----------------------------------------------------------------------------------------------------------GTTGGAAGCCTTCGTGGGAGAC 	15
-----------------------------------------------------------------------------------------------------------GTTGGAAGCCTTCGTGGGAG 	1
-----------------------------------------------------------------------------------------------------------GTTGGAAGCCTTCGTGGGAGA 	421
-----------------------------------------------------------------------------------------------------------GTTGGAAGCCTTCGTGGGA 	1
------------------------------------------------------------------------------------------------------------TTGGAAGCCTTCGTGGGAGA 	21
------------------------------------------------------------------------------------------------------------TTGGAAGCCTTCGTGGGAGAC 	2
-------------------------------------------------------------------------------------------------------------TGGAAGCCTTCGTGGGAGAC 	1
-------------------------------------------------------------------------------------------------------------TGGAAGCCTTCGTGGGAGA 	3


Overlaps with: MNEST039500 MNEST039501
Overlaps with miRBase pre-miRNAs: ppt-MIR477g
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Physcomitrella patens GSM313214 GTTGGAAGCCTTCGTGGGAGA TCCCTCAAAGGCTTCCAACAA down 3 0


Secondary structure

TGGTTACAGGGTGTTCGTTTTTCTCCCTCAAAGGCTTCCAACAACAGTCGGAATTAACTCTGATGCGGCCATTATCACTGGTTGCAGTGAATTATTCTAGTTCTGCTGTTGGAAGCCTTCGTGGGAGACGAAAGAACCCTTGTTTGGA
--------------------TTCTCCCTCAAAGGCTTCCAA 	2
---------------------TCTCCCTCAAAGGCTTCCA 	18
---------------------TCTCCCTCAAAGGCTTCCAAC 	15
---------------------TCTCCCTCAAAGGCTTCCAA 	82
----------------------CTCCCTCAAAGGCTTCCAA 	2
-----------------------TCCCTCAAAGGCTTCCAACAAC 	33
-----------------------TCCCTCAAAGGCTTCCAAC 	1
-----------------------TCCCTCAAAGGCTTCCAACAA 	27
-----------------------TCCCTCAAAGGCTTCCAACA 	3
------------------------CCCTCAAAGGCTTCCAACAAC 	1
------------------------CCCTCAAAGGCTTCCAACAA 	1
-------------------------CCTCAAAGGCTTCCAACAAC 	1
---------------------------------------------------------------------------------------------------------CTGTTGGAAGCCTTCGTGGGAGA 	3
----------------------------------------------------------------------------------------------------------TGTTGGAAGCCTTCGTGGGA 	1
----------------------------------------------------------------------------------------------------------TGTTGGAAGCCTTCGTGGGAGAC 	1
----------------------------------------------------------------------------------------------------------TGTTGGAAGCCTTCGTGGGAGA 	154
-----------------------------------------------------------------------------------------------------------GTTGGAAGCCTTCGTGGGAGAC 	4
-----------------------------------------------------------------------------------------------------------GTTGGAAGCCTTCGTGGGAG 	3
-----------------------------------------------------------------------------------------------------------GTTGGAAGCCTTCGTGGGAGA 	228
------------------------------------------------------------------------------------------------------------TTGGAAGCCTTCGTGGGAGA 	14
-------------------------------------------------------------------------------------------------------------TGGAAGCCTTCGTGGGAGA 	5


Overlaps with: MNEST039500 MNEST039501
Overlaps with miRBase pre-miRNAs: ppt-MIR477g
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Physcomitrella patens GSM313217 GTTGGAAGCCTTCGTGGGAGA TCCCTCAAAGGCTTCCAACAA down 3 0


Secondary structure

TGGTTACAGGGTGTTCGTTTTTCTCCCTCAAAGGCTTCCAACAACAGTCGGAATTAACTCTGATGCGGCCATTATCACTGGTTGCAGTGAATTATTCTAGTTCTGCTGTTGGAAGCCTTCGTGGGAGACGAAAGAACCCTTGTTTGGA
------------------TTTTCTCCCTCAAAGGCTTCC 	1
---------------------TCTCCCTCAAAGGCTTCCAAC 	71
---------------------TCTCCCTCAAAGGCTTCCAA 	132
---------------------TCTCCCTCAAAGGCTTCCA 	11
----------------------CTCCCTCAAAGGCTTCCAA 	2
-----------------------TCCCTCAAAGGCTTCCAACAACA 	7
-----------------------TCCCTCAAAGGCTTCCAAC 	6
-----------------------TCCCTCAAAGGCTTCCAACA 	7
-----------------------TCCCTCAAAGGCTTCCAACAAC 	237
-----------------------TCCCTCAAAGGCTTCCAACAACAG 	3
-----------------------TCCCTCAAAGGCTTCCAACAA 	31
------------------------CCCTCAAAGGCTTCCAACAACA 	1
------------------------CCCTCAAAGGCTTCCAACA 	1
------------------------CCCTCAAAGGCTTCCAACAAC 	13
-------------------------CCTCAAAGGCTTCCAACAAC 	2
--------------------------------------------------------------------------------------------------------GCTGTTGGAAGCCTTCGTGGGAGA 	15
--------------------------------------------------------------------------------------------------------GCTGTTGGAAGCCTTCGTGGGAGAC 	1
--------------------------------------------------------------------------------------------------------GCTGTTGGAAGCCTTCGTGGGAG 	1
---------------------------------------------------------------------------------------------------------CTGTTGGAAGCCTTCGTGGGAGAC 	3
---------------------------------------------------------------------------------------------------------CTGTTGGAAGCCTTCGTGGGAGA 	144
---------------------------------------------------------------------------------------------------------CTGTTGGAAGCCTTCGTGGGAG 	1
----------------------------------------------------------------------------------------------------------TGTTGGAAGCCTTCGTGGGA 	2
----------------------------------------------------------------------------------------------------------TGTTGGAAGCCTTCGTGGGAGAC 	6
----------------------------------------------------------------------------------------------------------TGTTGGAAGCCTTCGTGGGAGA 	80
-----------------------------------------------------------------------------------------------------------GTTGGAAGCCTTCGTGGGAGAC 	16
-----------------------------------------------------------------------------------------------------------GTTGGAAGCCTTCGTGGGAG 	2
-----------------------------------------------------------------------------------------------------------GTTGGAAGCCTTCGTGGGAGA 	408
-----------------------------------------------------------------------------------------------------------GTTGGAAGCCTTCGTGGGA 	4
------------------------------------------------------------------------------------------------------------TTGGAAGCCTTCGTGGGAGA 	25
-------------------------------------------------------------------------------------------------------------TGGAAGCCTTCGTGGGAGAC 	1
-------------------------------------------------------------------------------------------------------------TGGAAGCCTTCGTGGGAGA 	4


Overlaps with: MNEST039500 MNEST039501
Overlaps with miRBase pre-miRNAs: ppt-MIR477g
HuntMi prediction: true miRNA