miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



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selected mature miRNA sequence: TAAAGCTAGATAACCGAAAGT

selected species: Homo sapiens



6 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Homo sapiens GSM651905 TAAAGCTAGATAACCGAAAGT TCTTTGGTTATCTAGCTGTATG down 2 1


Secondary structure

GCAGCGGCACTGGCTAAGGGAGGCCCGTTTCTCTCTTTGGTTATCTAGCTGTATGAGTGCCACAGAGCCGTCATAAAGCTAGATAACCGAAAGTAGAAATGATTCTCACAACTTCTGCGTGCGA
---------------------------------TCTTTGGTTATCTAGCTGTATGA 	46
---------------------------------TCTTTGGTTATCTAGCTGTATG 	49
---------------------------------TCTTTGGTTATCTAGCTGT 	3
---------------------------------TCTTTGGTTATCTAGCTGTA 	1
----------------------------------CTTTGGTTATCTAGCTGTATG 	1
-----------------------------------TTTGGTTATCTAGCTGTATGA 	2
-----------------------------------TTTGGTTATCTAGCTGTATG 	2
------------------------------------TTGGTTATCTAGCTGTATG 	2
------------------------------------TTGGTTATCTAGCTGTATGA 	1
------------------------------------------------------------------------ATAAAGCTAGATAACCGAAAGTA 	13
------------------------------------------------------------------------ATAAAGCTAGATAACCGAAAGT 	20
------------------------------------------------------------------------ATAAAGCTAGATAACCGAAAG 	2
-------------------------------------------------------------------------TAAAGCTAGATAACCGAAAGTA 	16
-------------------------------------------------------------------------TAAAGCTAGATAACCGAAAGT 	99
-------------------------------------------------------------------------TAAAGCTAGATAACCGAAAG 	65
-------------------------------------------------------------------------TAAAGCTAGATAACCGAAA 	4
--------------------------------------------------------------------------AAAGCTAGATAACCGAAAG 	3
--------------------------------------------------------------------------AAAGCTAGATAACCGAAAGTA 	1

Overlaps with: MNEST028357
Overlaps with miRBase pre-miRNAs: hsa-mir-9-3 cfa-mir-9-3
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Homo sapiens GSM651905 TAAAGCTAGATAACCGAAAGT CTTTGGTTATCTAGCTGTATG down 2 0


Secondary structure

AGGAGGCGGGGTTGGTTGTTATCTTTGGTTATCTAGCTGTATGAGTGGTGTGGAGTCTTCATAAAGCTAGATAACCGAAAGTAAAAATAACCCCATACACT
---------------------TCTTTGGTTATCTAGCTGTATGA 	46
---------------------TCTTTGGTTATCTAGCTGTATG 	49
---------------------TCTTTGGTTATCTAGCTGT 	3
---------------------TCTTTGGTTATCTAGCTGTA 	1
----------------------CTTTGGTTATCTAGCTGTATG 	1
-----------------------TTTGGTTATCTAGCTGTATGA 	2
-----------------------TTTGGTTATCTAGCTGTATG 	2
------------------------TTGGTTATCTAGCTGTATG 	2
------------------------TTGGTTATCTAGCTGTATGA 	1
------------------------------------------------------------ATAAAGCTAGATAACCGAAAGTA 	13
------------------------------------------------------------ATAAAGCTAGATAACCGAAAGT 	20
------------------------------------------------------------ATAAAGCTAGATAACCGAAAGTAA 	3
------------------------------------------------------------ATAAAGCTAGATAACCGAAAG 	2
-------------------------------------------------------------TAAAGCTAGATAACCGAAAGTA 	16
-------------------------------------------------------------TAAAGCTAGATAACCGAAAGT 	99
-------------------------------------------------------------TAAAGCTAGATAACCGAAAG 	65
-------------------------------------------------------------TAAAGCTAGATAACCGAAAGTAA 	7
-------------------------------------------------------------TAAAGCTAGATAACCGAAA 	4
--------------------------------------------------------------AAAGCTAGATAACCGAAAG 	3
--------------------------------------------------------------AAAGCTAGATAACCGAAAGTA 	1

Overlaps with: MNEST026941
Overlaps with miRBase pre-miRNAs: ppy-mir-9-1 hsa-mir-9-1 ssc-mir-9-1 eca-mir-9a rno-mir-9b-1 rno-mir-9a-1 cfa-mir-9-1 mmu-mir-9-1 ptr-mir-9-1 mml-mir-9-1
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Homo sapiens GSM651905 TAAAGCTAGATAACCGAAAGT CTTTGGTTATCTAGCTGTATG down 2 0


Secondary structure

TGTGTGGGAAGCGAGTTGTTATCTTTGGTTATCTAGCTGTATGAGTGTATTGGTCTTCATAAAGCTAGATAACCGAAAGTAAAAACTCCTTCAAGATCG
---------------------TCTTTGGTTATCTAGCTGTATGA 	46
---------------------TCTTTGGTTATCTAGCTGTATG 	49
---------------------TCTTTGGTTATCTAGCTGT 	3
---------------------TCTTTGGTTATCTAGCTGTA 	1
----------------------CTTTGGTTATCTAGCTGTATG 	1
-----------------------TTTGGTTATCTAGCTGTATGA 	2
-----------------------TTTGGTTATCTAGCTGTATG 	2
------------------------TTGGTTATCTAGCTGTATG 	2
------------------------TTGGTTATCTAGCTGTATGA 	1
----------------------------------------------------------ATAAAGCTAGATAACCGAAAGTA 	13
----------------------------------------------------------ATAAAGCTAGATAACCGAAAGT 	20
----------------------------------------------------------ATAAAGCTAGATAACCGAAAGTAA 	3
----------------------------------------------------------ATAAAGCTAGATAACCGAAAG 	2
-----------------------------------------------------------TAAAGCTAGATAACCGAAAGTA 	16
-----------------------------------------------------------TAAAGCTAGATAACCGAAAGT 	99
-----------------------------------------------------------TAAAGCTAGATAACCGAAAG 	65
-----------------------------------------------------------TAAAGCTAGATAACCGAAAGTAA 	7
-----------------------------------------------------------TAAAGCTAGATAACCGAAA 	4
------------------------------------------------------------AAAGCTAGATAACCGAAAG 	3
------------------------------------------------------------AAAGCTAGATAACCGAAAGTA 	1

Overlaps with: MNEST027476 MNEST027538 MNEST027646 MNEST028168 MNEST028255 MNEST028356 MNEST030143 MNEST032653 MNEST033125 MNEST033908
Overlaps with miRBase pre-miRNAs: rno-mir-9a-2 oan-mir-9-2 hsa-mir-9-2 ptr-mir-9-2 mmu-mir-9-2 ggo-mir-9 bta-mir-9-2 cgr-mir-9 eca-mir-9a-2 mml-mir-9-2 ssc-mir-9-2 age-mir-9 mne-mir-9 cfa-mir-9-2 lla-mir-9
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Homo sapiens GSM531986-13294 ATAAAGCTAGATAACCGAAAGT TCTTTGGTTATCTAGCTGTATGA down 2 1


Secondary structure

GCAGCGGCACTGGCTAAGGGAGGCCCGTTTCTCTCTTTGGTTATCTAGCTGTATGAGTGCCACAGAGCCGTCATAAAGCTAGATAACCGAAAGTAGAAATGATTCTCACAACTTCTGCGTGCGA
---------------------------------TCTTTGGTTATCTAGCTGTATGA 	1
------------------------------------------------------------------------ATAAAGCTAGATAACCGAAAGT 	8
-------------------------------------------------------------------------TAAAGCTAGATAACCGAAAG 	1
-------------------------------------------------------------------------TAAAGCTAGATAACCGAAAGT 	1

Overlaps with: MNEST028357
Overlaps with miRBase pre-miRNAs: hsa-mir-9-3 cfa-mir-9-3
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Homo sapiens GSM531986-13294 ATAAAGCTAGATAACCGAAAGT CTTTGGTTATCTAGCTGTATGA down 2 0


Secondary structure

AGGAGGCGGGGTTGGTTGTTATCTTTGGTTATCTAGCTGTATGAGTGGTGTGGAGTCTTCATAAAGCTAGATAACCGAAAGTAAAAATAACCCCATACACT
---------------------TCTTTGGTTATCTAGCTGTATGA 	1
------------------------------------------------------------ATAAAGCTAGATAACCGAAAGT 	8
------------------------------------------------------------ATAAAGCTAGATAACCGAAAGTAA 	1
-------------------------------------------------------------TAAAGCTAGATAACCGAAAG 	1
-------------------------------------------------------------TAAAGCTAGATAACCGAAAGT 	1

Overlaps with: MNEST026941
Overlaps with miRBase pre-miRNAs: ppy-mir-9-1 hsa-mir-9-1 ssc-mir-9-1 eca-mir-9a rno-mir-9b-1 rno-mir-9a-1 cfa-mir-9-1 mmu-mir-9-1 ptr-mir-9-1 mml-mir-9-1
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Homo sapiens GSM531986-13294 ATAAAGCTAGATAACCGAAAGT CTTTGGTTATCTAGCTGTATGA down 2 0


Secondary structure

TGTGTGGGAAGCGAGTTGTTATCTTTGGTTATCTAGCTGTATGAGTGTATTGGTCTTCATAAAGCTAGATAACCGAAAGTAAAAACTCCTTCAAGATCG
---------------------TCTTTGGTTATCTAGCTGTATGA 	1
----------------------------------------------------------ATAAAGCTAGATAACCGAAAGT 	8
----------------------------------------------------------ATAAAGCTAGATAACCGAAAGTAA 	1
-----------------------------------------------------------TAAAGCTAGATAACCGAAAG 	1
-----------------------------------------------------------TAAAGCTAGATAACCGAAAGT 	1

Overlaps with: MNEST027476 MNEST027538 MNEST027646 MNEST028168 MNEST028255 MNEST028356 MNEST030143 MNEST032653 MNEST033125 MNEST033908
Overlaps with miRBase pre-miRNAs: rno-mir-9a-2 oan-mir-9-2 hsa-mir-9-2 ptr-mir-9-2 mmu-mir-9-2 ggo-mir-9 bta-mir-9-2 cgr-mir-9 eca-mir-9a-2 mml-mir-9-2 ssc-mir-9-2 age-mir-9 mne-mir-9 cfa-mir-9-2 lla-mir-9
HuntMi prediction: true miRNA