miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TAAAGTTATGGTACCGAAGTTA

selected species: Bombyx mori



1 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Bombyx mori GSM449726_Anterior_silkgland_clean TAAAGTTATGGTACCGAAGTTA TCTTTGGTATCCTAGCTGTAGG down 4 0


Secondary structure

TCGCGGGCCGTCTCTTTGGTATCCTAGCTGTAGGCGTGCGCGGCCCTAAAGTTATGGTACCGAAGTTACGGCTCGTG
----------TCTCTTTGGTATCCTAGCTGTAG 	1
-----------CTCTTTGGTATCCTAGCTGTAG 	6
-----------CTCTTTGGTATCCTAGCTG 	6
-----------CTCTTTGGTATCCTAGCTGTAGG 	3
-----------CTCTTTGGTATCCTAGCTGTA 	2
-----------CTCTTTGGTATCCTAGCTGT 	1
------------TCTTTGGTATCCTAGCTGTAGG 	2340
------------TCTTTGGTATCCTAGCTGTAG 	3062
------------TCTTTGGTATCCTAGCTGTA 	427
------------TCTTTGGTATCCTAGCTGT 	978
------------TCTTTGGTATCCTAGCTGTAGGC 	1
-------------CTTTGGTATCCTAGCTGTAG 	10
-------------CTTTGGTATCCTAGCTGTAGG 	4
-------------CTTTGGTATCCTAGCTGTA 	2
--------------TTTGGTATCCTAGCTGTAG 	10
--------------TTTGGTATCCTAGCTGTAGG 	5
---------------TTGGTATCCTAGCTGTAGG 	1
---------------------------------------------CTAAAGTTATGGTACCGAAGTTA 	5
----------------------------------------------TAAAGTTATGGTACCGAAGTTA 	7277
----------------------------------------------TAAAGTTATGGTACCGAAGTT 	592
----------------------------------------------TAAAGTTATGGTACCGAAGT 	24
----------------------------------------------TAAAGTTATGGTACCGAAGTTAC 	17
----------------------------------------------TAAAGTTATGGTACCGAAG 	7
-----------------------------------------------AAAGTTATGGTACCGAAGTTA 	17
-----------------------------------------------AAAGTTATGGTACCGAAGTT 	1
------------------------------------------------AAGTTATGGTACCGAAGTTA 	2
-------------------------------------------------AGTTATGGTACCGAAGTTA 	2


Overlaps with: MNEST035521
Overlaps with miRBase pre-miRNAs: bmo-mir-9c
HuntMi prediction: true miRNA