miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TAACACTGTCTGGTAACGATGC

selected species: Danio rerio



2 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Danio rerio GSM540645 TAACACTGTCTGGTAACGATGC ATCTTACCTGACAGTGCTTGGC down 2 2


Secondary structure

TTCATTCATTGTCTCTAGGGTACATCTTACCTGACAGTGCTTGGCTGTTCACTGATGTTCTAACACTGTCTGGTAACGATGCACTCTGGTGACTCAATAAAC
----------------------CATCTTACCTGACAGTGCTTGG 	9
----------------------------------------------------------TCTAACACTGTCTGGTAACGATGC 	1
-----------------------------------------------------------CTAACACTGTCTGGTAACGATGC 	2
------------------------------------------------------------TAACACTGTCTGGTAACGATGCA 	1109
------------------------------------------------------------TAACACTGTCTGGTAACGATGC 	4244
------------------------------------------------------------TAACACTGTCTGGTAACGATG 	310
------------------------------------------------------------TAACACTGTCTGGTAACGA 	1
------------------------------------------------------------TAACACTGTCTGGTAACGAT 	3
-------------------------------------------------------------AACACTGTCTGGTAACGATGCA 	15
-------------------------------------------------------------AACACTGTCTGGTAACGATGC 	27
-------------------------------------------------------------AACACTGTCTGGTAACGATG 	1
--------------------------------------------------------------ACACTGTCTGGTAACGATGC 	1

Overlaps with: MNEST034310
Overlaps with miRBase pre-miRNAs: dre-mir-141
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Danio rerio GSM540646 TAACACTGTCTGGTAACGATGC ATCTTACCTGACAGTGCTTGGC down 2 2


Secondary structure

TTCATTCATTGTCTCTAGGGTACATCTTACCTGACAGTGCTTGGCTGTTCACTGATGTTCTAACACTGTCTGGTAACGATGCACTCTGGTGACTCAATAAAC
----------------------CATCTTACCTGACAGTGCT 	1
----------------------CATCTTACCTGACAGTGCTTGGC 	7
----------------------CATCTTACCTGACAGTGCTTGG 	87
-----------------------ATCTTACCTGACAGTGCTTGG 	3
------------------------TCTTACCTGACAGTGCTTGG 	1
----------------------------------------------------------TCTAACACTGTCTGGTAACGATGCA 	2
----------------------------------------------------------TCTAACACTGTCTGGTAACGATG 	1
-----------------------------------------------------------CTAACACTGTCTGGTAACGATGCA 	7
-----------------------------------------------------------CTAACACTGTCTGGTAACGATGC 	6
-----------------------------------------------------------CTAACACTGTCTGGTAACGATG 	2
------------------------------------------------------------TAACACTGTCTGGTAACGATGCAC 	13
------------------------------------------------------------TAACACTGTCTGGTAACGATGCA 	16771
------------------------------------------------------------TAACACTGTCTGGTAACGATG 	760
------------------------------------------------------------TAACACTGTCTGGTAACGATGC 	22727
------------------------------------------------------------TAACACTGTCTGGTAACGA 	4
------------------------------------------------------------TAACACTGTCTGGTAACGAT 	12
-------------------------------------------------------------AACACTGTCTGGTAACGATGCA 	121
-------------------------------------------------------------AACACTGTCTGGTAACGATG 	2
-------------------------------------------------------------AACACTGTCTGGTAACGATGC 	42
--------------------------------------------------------------ACACTGTCTGGTAACGATGC 	10
--------------------------------------------------------------ACACTGTCTGGTAACGATGCA 	7

Overlaps with: MNEST034310
Overlaps with miRBase pre-miRNAs: dre-mir-141
HuntMi prediction: true miRNA