miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TAACAGTCTACAGCCATGGTCG

selected species: Danio rerio



3 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Danio rerio GSM540645 TAACAGTCTACAGCCATGGTCG ACCGTGGCTTTAGATTGTTACT down 1 0


Secondary structure

GTCTCCATGCTGACCGTGGCTTTAGATTGTTACTGTAGCGTTGGCACGTGGTAACAGTCTACAGCCATGGTCGCCAAGGGGC
------------ACCGTGGCTTTAGATTGTTACT 	25
------------ACCGTGGCTTTAGATTGTTAC 	1
---------------------------------------------------TAACAGTCTACAGCCATGGTCG 	43
---------------------------------------------------TAACAGTCTACAGCCATGGTC 	1

Overlaps with: MNEST034295
Overlaps with miRBase pre-miRNAs: dre-mir-132-2 dre-mir-132-3
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Danio rerio GSM540645 TAACAGTCTACAGCCATGGTCG ACCGTGGCATTAGATTGTTACT down 2 0


Secondary structure

CCACTGCCAACCCTCCTGCTGTCTCCATGGCGACCGTGGCATTAGATTGTTACTGTAGGAACAGAATTTTTGGTAACAGTCTACAGCCATGGTCGCTAGTGGGCAGAAACACCAGCATCTACCC
------------------------------------TGGCATTAGATTGTTACTGTAG 	1
------------------------------------------------------GTAGGAACAGAATTTTTGG 	13
-------------------------------------------------------------------------TAACAGTCTACAGCCATGGTCG 	43
-------------------------------------------------------------------------TAACAGTCTACAGCCATGGTC 	1

Overlaps with: MNEST034294
Overlaps with miRBase pre-miRNAs: dre-mir-132-1
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Danio rerio GSM540646 TAACAGTCTACAGCCATGGTCG ACCGTGGCATTAGATTGTTACT down 2 0


Secondary structure

CCACTGCCAACCCTCCTGCTGTCTCCATGGCGACCGTGGCATTAGATTGTTACTGTAGGAACAGAATTTTTGGTAACAGTCTACAGCCATGGTCGCTAGTGGGCAGAAACACCAGCATCTACCC
------------------------------------------------------GTAGGAACAGAATTTTTGG 	13
------------------------------------------------------GTAGGAACAGAATTTTTGGT 	1
-------------------------------------------------------------------------TAACAGTCTACAGCCATGGTCGC 	2
-------------------------------------------------------------------------TAACAGTCTACAGCCATGGTCG 	103

Overlaps with: MNEST034294
Overlaps with miRBase pre-miRNAs: dre-mir-132-1
HuntMi prediction: true miRNA