miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TAACTATTTTGAGAAGAAGTG

selected species: Arabidopsis thaliana



2 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Arabidopsis thaliana GSM415786-5994 TAACTATTTTGAGAAGAAGTG CCTCTTCTCCAAATAGTTTAGG down 4 1


Secondary structure

ACTAAACACAAAATCTGTAAACGCCTCGATCTCCTCTTCTCCAAATAGTTTAGGTTAGCTGACATATAATAATTCAATAGACCCCAGTTTCTCCAGATAACCTAACTATTTTGAGAAGAAGTGAACGAAGAGCGATTACAAGTTAGGAGAGT
------------------------------------------------------------------------------------------------------TAACTATTTTGAGAAGAAGTG 	5

Overlaps with: MNEST040149 MNEST047062 MNEST047063
Overlaps with miRBase pre-miRNAs: ath-MIR830
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Arabidopsis thaliana GSM366866 TAACTATTTTGAGAAGAAGTG CCTCTTCTCCAAATAGTTTAGG down 4 1


Secondary structure

ACTAAACACAAAATCTGTAAACGCCTCGATCTCCTCTTCTCCAAATAGTTTAGGTTAGCTGACATATAATAATTCAATAGACCCCAGTTTCTCCAGATAACCTAACTATTTTGAGAAGAAGTGAACGAAGAGCGATTACAAGTTAGGAGAGT
--------------------------------CCTCTTCTCCAAATAGTTTAGG 	1
----------------------------------TCTTCTCCAAATAGTTTAGGTT 	1
-----------------------------------------------------------------------------------------------GATAACCTAACTATTTTGAGA 	1
------------------------------------------------------------------------------------------------------TAACTATTTTGAGAAGAAGTG 	12

Overlaps with: MNEST040149 MNEST047062 MNEST047063
Overlaps with miRBase pre-miRNAs: ath-MIR830
HuntMi prediction: true miRNA